Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g08498 Brassica carinata HOM05D004212 ORTHO05D005128 4.3e-144 514.6 252 100.0
A07p21880 Brassica napus HOM05D004212 ORTHO05D005128 7.4e-80 301.2 279 62.4
BraA07t29869Z Brassica rapa HOM05D004212 ORTHO05D005128 7.4e-80 301.2 279 62.4
BolC6t37364H Brassica oleracea HOM05D004212 ORTHO05D005128 4.8e-79 298.5 279 61.6
BcaB02g07758 Brassica carinata HOM05D004212 ORTHO05D005128 6.3e-79 298.1 279 60.9
Sp5g08430 Schrenkiella parvula HOM05D004212 ORTHO05D005128 1.1e-78 297.4 283 59.7
BcaC08g44655 Brassica carinata HOM05D004212 ORTHO05D005128 1.8e-78 296.6 279 61.3
C06p21750 Brassica napus HOM05D004212 ORTHO05D005128 1.8e-78 296.6 279 61.3
AL5G34970 Arabidopsis lyrata HOM05D004212 ORTHO05D005128 2.3e-65 253.1 286 53.1
AT3G53970 Arabidopsis thaliana HOM05D004212 ORTHO05D005128 1.1e-62 244.2 286 51.7
Carub.0005s2056 Capsella rubella HOM05D004212 ORTHO05D005128 4.5e-61 238.8 290 51.7
Aa31LG10G8930 Aethionema arabicum HOM05D004212 ORTHO05D005128 9.4e-59 231.1 285 51.6
CARHR163870 Cardamine hirsuta HOM05D004212 ORTHO05D005128 3.3e-56 222.6 287 47.7
Thhalv10010577m.g Eutrema salsugineum HOM05D004212 ORTHO05D005128 5.7e-56 221.9 293 47.1
A09p46880 Brassica napus HOM05D004212 ORTHO05D005128 2.9e-52 209.5 269 48.3
BcaB01g00227 Brassica carinata HOM05D004212 ORTHO05D005128 5.0e-52 208.8 249 53.8
BraA09t40156Z Brassica rapa HOM05D004212 ORTHO05D005128 3.6e-50 202.6 294 44.9
THA.LOC104806541 Tarenaya hassleriana HOM05D004212 ORTHO05D005128 4.8e-47 192.2 287 43.6
BcaC07g39746 Brassica carinata HOM05D004212 ORTHO05D005128 2.9e-44 183.0 264 46.6
BolC8t50520H Brassica oleracea HOM05D004212 ORTHO05D005128 5.0e-44 182.2 264 46.6
C08p29190 Brassica napus HOM05D004212 ORTHO05D005128 1.5e-43 180.6 264 46.2
GSVIVG01034068001 Vitis vinifera HOM05D004212 ORTHO05D005128 6.8e-41 171.8 293 41.6
COL.COLO4_14697 Corchorus olitorius HOM05D004212 ORTHO05D005128 2.0e-40 170.2 292 41.4
Cfa010180 Carpinus fangiana HOM05D004212 ORTHO05D005128 2.2e-39 166.8 293 41.3
Thecc.05G029300 Theobroma cacao HOM05D004212 ORTHO05D005128 4.8e-39 165.6 296 38.2
Gohir.D01G209900 Gossypium hirsutum HOM05D004212 ORTHO05D005128 1.8e-38 163.7 289 39.4
Gorai.002G255500 Gossypium raimondii HOM05D004212 ORTHO05D005128 1.8e-38 163.7 289 39.4
Lalb_Chr03g0042691 Lupinus albus HOM05D004212 ORTHO05D005128 1.8e-38 163.7 288 39.2
Manes.09G098300 Manihot esculenta HOM05D004212 ORTHO05D005128 5.4e-38 162.2 291 38.8
Psat3g133560 Pisum sativum HOM05D004212 ORTHO05D005128 9.1e-38 161.4 293 39.2
Gohir.A01G221000 Gossypium hirsutum HOM05D004212 ORTHO05D005128 1.2e-37 161.0 295 39.3
TPR.G34923 Trifolium pratense HOM05D004212 ORTHO05D005128 1.2e-37 161.0 289 38.8
CiPaw.09G201200 Carya illinoinensis HOM05D004212 ORTHO05D005128 1.6e-37 160.6 288 38.9
AUR62015980 Chenopodium quinoa HOM05D004212 ORTHO05D005128 1.6e-37 160.6 278 41.0
Oeu001834.1 Olea europaea HOM05D004212 ORTHO05D005128 1.6e-37 160.6 290 40.3
Eucgr.K03043 Eucalyptus grandis HOM05D004212 ORTHO05D005128 3.5e-37 159.5 283 40.6
Haze_20882 Corylus avellana HOM05D004212 ORTHO05D005128 7.7e-37 158.3 316 38.3
Haze_20891 Corylus avellana HOM05D004212 ORTHO05D005128 1.3e-36 157.5 316 38.3
FAN12G3486 Fragaria x ananassa HOM05D004212 ORTHO05D005128 1.7e-36 157.1 288 38.5
AUR62021188 Chenopodium quinoa HOM05D004212 ORTHO05D005128 2.3e-36 156.8 291 39.9
Peaxi162Scf00975g00132 Petunia axillaris HOM05D004212 ORTHO05D005128 2.3e-36 156.8 291 37.8
Lalb_Chr19g0125041 Lupinus albus HOM05D004212 ORTHO05D005128 2.9e-36 156.4 285 36.8
Prupe.6G264400 Prunus persica HOM05D004212 ORTHO05D005128 2.9e-36 156.4 303 36.6
TAR633G1640 Trochodendron aralioides HOM05D004212 ORTHO05D005128 3.8e-36 156.0 289 38.4
Ca_07566_v3 Cicer arietinum L. HOM05D004212 ORTHO05D005128 5.0e-36 155.6 288 38.9
Solyc09g011450.4 Solanum lycopersicum HOM05D004212 ORTHO05D005128 5.0e-36 155.6 291 39.9
MSTRG.10244 Avicennia marina HOM05D004212 ORTHO05D005128 6.6e-36 155.2 296 36.8
CANSAT35G0035 Cannabis sativa HOM05D004212 ORTHO05D005128 6.6e-36 155.2 295 39.0
Ciclev10021036m.g Citrus clementina HOM05D004212 ORTHO05D005128 6.6e-36 155.2 285 39.6
Hund00715 Selenicereus undatus HOM05D004212 ORTHO05D005128 1.1e-35 154.5 288 38.5
Atru.chr8.2089 Acer truncatum HOM05D004212 ORTHO05D005128 1.9e-35 153.7 286 38.5
arahy.Tifrunner.gnm1.ann1.MS11WY Arachis hypogaea HOM05D004212 ORTHO05D005128 1.9e-35 153.7 297 37.4
FAN12G2442 Fragaria x ananassa HOM05D004212 ORTHO05D005128 1.9e-35 153.7 288 37.8
Nitab4.5_0008116g0030 Nicotiana tabacum HOM05D004212 ORTHO05D005128 1.9e-35 153.7 290 39.0
FAN07G0792 Fragaria x ananassa HOM05D004212 ORTHO05D005128 2.5e-35 153.3 288 38.5
Sopen09g006170 Solanum pennellii HOM05D004212 ORTHO05D005128 3.3e-35 152.9 291 39.5
Sc22g0004390 Simmondsia chinensis HOM05D004212 ORTHO05D005128 1.2e-34 151.0 290 37.6
arahy.Tifrunner.gnm1.ann1.PUF7HK Arachis hypogaea HOM05D004212 ORTHO05D005128 1.6e-34 150.6 301 36.9
Lsat_1_v5_gn_8_84101 Lactuca sativa HOM05D004212 ORTHO05D005128 1.6e-34 150.6 291 36.1
arahy.Tifrunner.gnm1.ann1.SP0BHI Arachis hypogaea HOM05D004212 ORTHO05D005128 4.7e-34 149.1 297 37.7
Glyma.09G059100 Glycine max HOM05D004212 ORTHO05D005128 1.4e-33 147.5 294 37.1
Medtr7g065120 Medicago truncatula HOM05D004212 ORTHO05D005128 1.4e-33 147.5 298 37.2
SalBow7G2619 Salvia bowleyana HOM05D004212 ORTHO05D005128 1.4e-33 147.5 287 38.7
Migut.J00264 Erythranthe guttata HOM05D004212 ORTHO05D005128 2.3e-33 146.7 288 38.2
MD04G1138800 Malus domestica HOM05D004212 ORTHO05D005128 5.2e-33 145.6 308 36.4
Potri.016G103800 Populus trichocarpa HOM05D004212 ORTHO05D005128 5.2e-33 145.6 292 36.6
TWI53G1663 Tripterygium wilfordii HOM05D004212 ORTHO05D005128 5.2e-33 145.6 299 39.1
EL10Ac3g05638 Beta vulgaris HOM05D004212 ORTHO05D005128 8.9e-33 144.8 288 38.2
Lj1g0008590 Lotus japonicus HOM05D004212 ORTHO05D005128 8.9e-33 144.8 293 36.9
PGR004G1844 Punica granatum HOM05D004212 ORTHO05D005128 8.9e-33 144.8 294 37.1
RcHm_v2.0_Chr4g0406841 Rosa chinensis HOM05D004212 ORTHO05D005128 8.9e-33 144.8 288 37.8
Glyma.15G165200 Glycine max HOM05D004212 ORTHO05D005128 1.2e-32 144.4 291 36.4
HanXRQChr04g0124481 Helianthus annuus HOM05D004212 ORTHO05D005128 1.2e-32 144.4 290 36.9
Ciclev10012365m.g Citrus clementina HOM05D004212 ORTHO05D005128 2.6e-32 143.3 270 37.8
PGSC0003DMG400024265 Solanum tuberosum HOM05D004212 ORTHO05D005128 4.4e-32 142.5 307 36.5
Sabra16G0103700 Salix brachista HOM05D004212 ORTHO05D005128 7.5e-32 141.7 292 37.0
TWI74G0733 Tripterygium wilfordii HOM05D004212 ORTHO05D005128 7.5e-32 141.7 297 38.4
CsaV3_4G025590 Cucumis sativus L. HOM05D004212 ORTHO05D005128 1.3e-31 141.0 305 36.7
MELO3C003185.2 Cucumis melo HOM05D004212 ORTHO05D005128 1.7e-31 140.6 305 36.4
Cc06_g02090 Coffea canephora HOM05D004212 ORTHO05D005128 3.7e-31 139.4 293 35.8
QL07p028338 Quercus lobata HOM05D004212 ORTHO05D005128 4.9e-31 139.0 291 35.4
MD12G1154600 Malus domestica HOM05D004212 ORTHO05D005128 8.3e-31 138.3 303 35.6
arahy.Tifrunner.gnm1.ann1.77ZQ01 Arachis hypogaea HOM05D004212 ORTHO05D005128 1.1e-30 137.9 284 35.6
arahy.Tifrunner.gnm1.ann1.59HWIF Arachis hypogaea HOM05D004212 ORTHO05D005128 1.8e-30 137.1 284 35.2
Dinv35542 Davidia involucrata HOM05D004212 ORTHO05D005128 3.2e-30 136.3 237 40.5
Phvul.006G149300 Phaseolus vulgaris HOM05D004212 ORTHO05D005128 3.2e-30 136.3 291 35.4
ClCG04G007620 Citrullus lanatus HOM05D004212 ORTHO05D005128 5.4e-30 135.6 305 35.7
unitig_62.g23469 Utricularia gibba HOM05D004212 ORTHO05D005128 7.0e-30 135.2 286 35.3
HPP92_005893 Vanilla planifolia HOM05D004212 ORTHO05D005128 9.2e-30 134.8 287 34.8
Carub.0003s2694 Capsella rubella HOM05D004212 ORTHO05D005128 1.2e-29 134.4 188 46.3
VMungo0540G1009 Vigna mungo HOM05D004212 ORTHO05D005128 2.7e-29 133.3 289 35.6
AL3G43230 Arabidopsis lyrata HOM05D004212 ORTHO05D005128 3.5e-29 132.9 183 46.4
Sed0021611 Sechium edule HOM05D004212 ORTHO05D005128 5.9e-29 132.1 295 35.9
ECA236G3305 Erigeron canadensis HOM05D004212 ORTHO05D005128 1.0e-28 131.3 287 34.1
AL3G43180 Arabidopsis lyrata HOM05D004212 ORTHO05D005128 1.7e-28 130.6 183 46.4
Nn2g11289 Nelumbo nucifera HOM05D004212 ORTHO05D005128 5.0e-28 129.0 300 34.7
SGA_v2.0_scaffold673G53429 Striga asiatica HOM05D004212 ORTHO05D005128 2.5e-27 126.7 244 35.7
vmacro20195 Vaccinium macrocarpon HOM05D004212 ORTHO05D005128 2.5e-27 126.7 289 35.6
FAN14G3630 Fragaria x ananassa HOM05D004212 ORTHO05D005128 3.3e-27 126.3 305 34.1
DCAR_028811 Daucus carota HOM05D004212 ORTHO05D005128 4.3e-27 125.9 288 34.7
FvH4_6g12740 Fragaria vesca HOM05D004212 ORTHO05D005128 4.3e-27 125.9 300 34.3
ATR1134G026 Amborella trichopoda HOM05D004212 ORTHO05D005128 1.2e-26 124.4 277 31.8
Hma1.2p1_0671F.1_g200560 Hydrangea macrophylla HOM05D004212 ORTHO05D005128 1.2e-26 124.4 276 36.6
Rhsim05G0199700 Rhododendron simsii HOM05D004212 ORTHO05D005128 1.6e-26 124.0 284 34.5
FAN05G0076 Fragaria x ananassa HOM05D004212 ORTHO05D005128 2.1e-26 123.6 300 34.0
SMO115G0073 Selaginella moellendorffii HOM05D004212 ORTHO05D005128 3.6e-26 122.9 285 34.0
AT1G48530 Arabidopsis thaliana HOM05D004212 ORTHO05D005128 1.4e-25 120.9 166 44.6
CSS0007767 Camellia sinensis var. sinensis HOM05D004212 ORTHO05D005128 1.4e-25 120.9 292 34.2
Actinidia29168 Actinidia chinensis HOM05D004212 ORTHO05D005128 1.8e-25 120.6 248 35.5
Aqoxy4G03223 Aquilegia oxysepala HOM05D004212 ORTHO05D005128 1.5e-24 117.5 299 33.1
Aqoxy7G01126 Aquilegia oxysepala HOM05D004212 ORTHO05D005128 3.4e-24 116.3 298 32.6
BolC4t25439H Brassica oleracea HOM05D038158 ORTHO05D042869 4.4e-24 115.9 71 76.1
RcHm_v2.0_Chr3g0464661 Rosa chinensis HOM05D004212 ORTHO05D005128 4.4e-24 115.9 301 32.6
BolC6t39520H Brassica oleracea HOM05D004212 ORTHO05D005128 5.8e-24 115.5 85 69.4
CDE02G2360 Ceratophyllum demersum HOM05D004212 ORTHO05D005128 1.3e-23 114.4 292 32.9
Duzib093G0395 Durio zibethinus HOM05D004212 ORTHO05D005128 1.1e-22 111.3 286 29.7
Oeu021128.1 Olea europaea HOM05D004212 ORTHO05D005128 1.4e-22 110.9 400 28.0
FvH4_4g10740 Fragaria vesca HOM05D004212 ORTHO05D005128 1.9e-22 110.5 205 39.5
PSO339G0401 Papaver somniferum HOM05D004212 ORTHO05D005128 2.4e-22 110.2 288 34.7
Zm00001eb323600 Zea mays HOM05D004212 ORTHO05D005128 5.4e-22 109.0 288 31.9
PSO384G5122 Papaver somniferum HOM05D004212 ORTHO05D005128 9.2e-22 108.2 295 33.9
Mapoly0013s0005 Marchantia polymorpha HOM05D004212 ORTHO05D005128 4.6e-21 105.9 296 32.8
Pp3c12_26190 Physcomitrium patens HOM05D004212 ORTHO05D005128 1.0e-20 104.8 299 30.1
C04p38620 Brassica napus HOM05D038158 ORTHO05D042869 1.3e-20 104.4 72 72.2
FAN09G1025 Fragaria x ananassa HOM05D004212 ORTHO05D005128 6.6e-20 102.1 144 43.8
Lj2C86T9 Lonicera japonica HOM05D004212 ORTHO05D005128 6.6e-20 102.1 291 31.6
Os07g0548900 Oryza sativa ssp. japonica HOM05D004212 ORTHO05D005128 3.3e-19 99.8 293 32.1
CAN.G697.3 Capsicum annuum HOM05D004212 ORTHO05D005128 1.6e-18 97.4 207 33.8
RcHm_v2.0_Chr4g0419261 Rosa chinensis HOM05D004212 ORTHO05D005128 5.2e-17 92.4 220 34.5
CBR_g46706 Chara braunii HOM05D004212 ORTHO05D005128 2.0e-16 90.5 336 29.5
C05p20210 Brassica napus HOM05D004212 ORTHO05D032610 3.4e-16 89.7 67 68.7
BolC5t30714H Brassica oleracea HOM05D004212 ORTHO05D032610 3.4e-16 89.7 67 68.7
Lj4g0027540 Lotus japonicus HOM05D004212 ORTHO05D005128 7.5e-16 88.6 285 28.4
BcaC05g26039 Brassica carinata HOM05D004212 ORTHO05D032610 1.3e-15 87.8 67 67.2
SEGI_10222 Sequoiadendron giganteum HOM05D004212 ORTHO05D005128 8.3e-15 85.1 155 33.5
Hma1.2p1_0097F.1_g048000 Hydrangea macrophylla HOM05D004212 ORTHO05D005128 4.1e-14 82.8 116 42.2
Lj3C960G5 Lonicera japonica HOM05D004212 ORTHO05D005128 6.6e-12 75.5 115 39.1
BcaC02g09118 Brassica carinata HOM05D004212 ORTHO05D005128 1.5e-11 74.3 47 78.7
arahy.Tifrunner.gnm1.ann1.MGHR3Z Arachis hypogaea HOM05D004212 ORTHO05D005128 2.5e-11 73.6 115 39.1
Prupe.6G304800 Prunus persica HOM05D004212 ORTHO05D005128 7.3e-11 72.0 149 34.2
PSO104G0091 Papaver somniferum HOM05D004212 ORTHO05D005128 2.1e-10 70.5 175 33.1
Cfa009861 Carpinus fangiana HOM05D004212 ORTHO05D005128 2.8e-10 70.1 211 28.9
PSO104G0005 Papaver somniferum HOM05D004212 ORTHO05D005128 3.6e-10 69.7 175 33.1
PSO421G0231 Papaver somniferum HOM05D004212 ORTHO05D005128 8.1e-10 68.6 178 31.5
arahy.Tifrunner.gnm1.ann1.U24FMU Arachis hypogaea HOM05D004212 ORTHO05D005128 4.0e-09 66.2 103 38.8
PSO104G0021 Papaver somniferum HOM05D004212 ORTHO05D005128 8.9e-09 65.1 159 34.0
MD17G1162600 Malus domestica HOM05D004212 ORTHO05D005128 1.5e-08 64.3 149 34.9
AagrBONN_evm.TU.Sc2ySwM_344.2315 Anthoceros agrestis HOM05D004212 ORTHO05D005128 2.9e-07 60.1 159 35.2
MD12G1200000 Malus domestica HOM05D004212 ORTHO05D005128 2.9e-07 60.1 184 32.6
RcHm_v2.0_Chr4g0416021 Rosa chinensis HOM05D004212 ORTHO05D005128 1.1e-06 58.2 130 37.7


User provided reference genes

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