Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g08483 Brassica carinata HOM05D006196 ORTHO05D007758 1.1e-184 649.8 328 100.0
BcaC02g09075 Brassica carinata HOM05D006196 ORTHO05D007758 8.2e-172 607.1 328 92.7
A04p05460 Brassica napus HOM05D006196 ORTHO05D007758 1.9e-168 595.9 326 92.0
BraA04t16248Z Brassica rapa HOM05D006196 ORTHO05D007758 1.2e-167 593.2 326 91.7
C04p38140 Brassica napus HOM05D006196 ORTHO05D007758 1.5e-165 586.3 329 90.3
Sp5g08100 Schrenkiella parvula HOM05D006196 ORTHO05D007758 1.0e-150 537.0 356 78.9
BraA09t40190Z Brassica rapa HOM05D006196 ORTHO05D007758 2.8e-148 528.9 367 74.4
Thhalv10010495m.g Eutrema salsugineum HOM05D006196 ORTHO05D007758 2.8e-148 528.9 354 76.6
BolC8t50558H Brassica oleracea HOM05D006196 ORTHO05D007758 6.3e-148 527.7 365 75.9
C08p29520 Brassica napus HOM05D006196 ORTHO05D007758 1.1e-147 526.9 365 74.5
AT3G54290 Arabidopsis thaliana HOM05D006196 ORTHO05D007758 1.4e-147 526.6 350 78.0
A09p47290 Brassica napus HOM05D006196 ORTHO05D007758 2.4e-147 525.8 367 73.6
AL5G35330 Arabidopsis lyrata HOM05D006196 ORTHO05D007758 2.2e-145 519.2 353 76.8
Carub.0005s2088 Capsella rubella HOM05D006196 ORTHO05D007758 5.0e-145 518.1 346 77.7
CARHR164220 Cardamine hirsuta HOM05D006196 ORTHO05D007758 6.5e-145 517.7 359 76.0
Aa31sc392G30 Aethionema arabicum HOM05D006196 ORTHO05D007758 9.8e-125 450.7 338 69.5
THA.LOC104811342 Tarenaya hassleriana HOM05D006196 ORTHO05D007758 7.0e-123 444.5 359 62.7
BcaB01g00209 Brassica carinata HOM05D006196 ORTHO05D007758 8.6e-113 411.0 365 63.0
BolC4t25389H Brassica oleracea HOM05D006196 ORTHO05D007758 8.4e-100 367.9 207 90.3
Cpa.g.sc56.1 Carica papaya HOM05D006196 ORTHO05D007758 1.2e-98 364.0 334 56.3
Manes.10G062200 Manihot esculenta HOM05D006196 ORTHO05D007758 4.5e-93 345.5 324 52.8
Manes.07G086900 Manihot esculenta HOM05D006196 ORTHO05D007758 9.9e-93 344.4 326 54.0
Thecc.10G115000 Theobroma cacao HOM05D006196 ORTHO05D007758 8.4e-92 341.3 330 55.5
CiPaw.13G040700 Carya illinoinensis HOM05D006196 ORTHO05D007758 1.9e-91 340.1 323 55.1
Haze_03294 Corylus avellana HOM05D006196 ORTHO05D007758 2.4e-91 339.7 328 52.4
Duzib114G0383 Durio zibethinus HOM05D006196 ORTHO05D007758 2.4e-91 339.7 331 54.4
Atru.chr12.1044 Acer truncatum HOM05D006196 ORTHO05D007758 3.5e-90 335.9 322 55.6
Rhsim03G0097800 Rhododendron simsii HOM05D006196 ORTHO05D007758 1.3e-89 334.0 331 52.0
Nitab4.5_0003590g0020 Nicotiana tabacum HOM05D006196 ORTHO05D007758 1.7e-89 333.6 332 53.6
ClCG08G008290 Citrullus lanatus HOM05D006196 ORTHO05D007758 1.9e-88 330.1 328 52.1
Nitab4.5_0002586g0080 Nicotiana tabacum HOM05D006196 ORTHO05D007758 1.9e-88 330.1 332 53.0
COL.COLO4_29746 Corchorus olitorius HOM05D006196 ORTHO05D007758 3.3e-88 329.3 333 51.4
CSS0023098 Camellia sinensis var. sinensis HOM05D006196 ORTHO05D007758 5.6e-88 328.6 328 52.7
Hma1.2p1_0457F.1_g156990 Hydrangea macrophylla HOM05D006196 ORTHO05D007758 9.6e-88 327.8 298 54.0
Oeu026604.1 Olea europaea HOM05D006196 ORTHO05D007758 1.3e-87 327.4 317 51.4
CAN.G645.29 Capsicum annuum HOM05D006196 ORTHO05D007758 4.8e-87 325.5 329 52.0
Cc02_g09600 Coffea canephora HOM05D006196 ORTHO05D007758 6.2e-87 325.1 325 51.7
Gorai.012G020000 Gossypium raimondii HOM05D006196 ORTHO05D007758 1.1e-86 324.3 325 52.6
QL04p046737 Quercus lobata HOM05D006196 ORTHO05D007758 3.1e-86 322.8 339 50.7
Sed0021157 Sechium edule HOM05D006196 ORTHO05D007758 5.3e-86 322.0 337 50.1
CsaV3_6G004260 Cucumis sativus L. HOM05D006196 ORTHO05D007758 9.0e-86 321.2 330 50.3
Lj2C33T17 Lonicera japonica HOM05D006196 ORTHO05D007758 9.0e-86 321.2 336 51.5
Gohir.D04G017300 Gossypium hirsutum HOM05D006196 ORTHO05D007758 1.5e-85 320.5 325 52.3
MELO3C019897.2 Cucumis melo HOM05D006196 ORTHO05D007758 2.0e-85 320.1 330 50.0
MSTRG.27569 Avicennia marina HOM05D006196 ORTHO05D007758 4.5e-85 318.9 328 50.6
Gohir.A05G398600 Gossypium hirsutum HOM05D006196 ORTHO05D007758 4.5e-85 318.9 325 52.3
Sabra10G0187700 Salix brachista HOM05D006196 ORTHO05D007758 7.6e-85 318.2 322 51.2
Solyc11g006830.2 Solanum lycopersicum HOM05D006196 ORTHO05D007758 9.9e-85 317.8 323 50.8
TAR623G1022 Trochodendron aralioides HOM05D006196 ORTHO05D007758 9.9e-85 317.8 319 52.0
Sopen11g002750 Solanum pennellii HOM05D006196 ORTHO05D007758 1.3e-84 317.4 323 50.8
PGSC0003DMG400023969 Solanum tuberosum HOM05D006196 ORTHO05D007758 1.3e-84 317.4 323 50.5
TWI38G1704 Tripterygium wilfordii HOM05D006196 ORTHO05D007758 1.3e-84 317.4 319 51.1
Migut.F00871 Erythranthe guttata HOM05D006196 ORTHO05D007758 3.8e-84 315.8 318 51.6
Sed0008038 Sechium edule HOM05D006196 ORTHO05D007758 1.1e-83 314.3 324 52.2
Sabra08G0013000 Salix brachista HOM05D006196 ORTHO05D007758 2.4e-83 313.2 322 49.1
Actinidia18628 Actinidia chinensis HOM05D006196 ORTHO05D007758 4.2e-83 312.4 325 49.2
MSTRG.9056 Avicennia marina HOM05D006196 ORTHO05D007758 5.5e-83 312.0 329 49.8
CANSAT56G0980 Cannabis sativa HOM05D006196 ORTHO05D007758 1.6e-82 310.5 318 52.5
Lsat_1_v5_gn_2_104380 Lactuca sativa HOM05D006196 ORTHO05D007758 1.6e-82 310.5 309 51.1
Lj5g0013601 Lotus japonicus HOM05D006196 ORTHO05D007758 2.1e-82 310.1 324 50.9
Potri.010G239700 Populus trichocarpa HOM05D006196 ORTHO05D007758 2.7e-82 309.7 322 49.1
Glyma.10G278400 Glycine max HOM05D006196 ORTHO05D007758 3.5e-82 309.3 332 50.3
Glyma.20G111300 Glycine max HOM05D006196 ORTHO05D007758 4.6e-82 308.9 335 50.1
unitig_37.g12349 Utricularia gibba HOM05D006196 ORTHO05D007758 1.8e-81 307.0 319 50.5
Potri.008G019700 Populus trichocarpa HOM05D006196 ORTHO05D007758 3.0e-81 306.2 324 48.8
SalBow6G5730 Salvia bowleyana HOM05D006196 ORTHO05D007758 5.1e-81 305.4 319 49.8
HanXRQChr11g0342081 Helianthus annuus HOM05D006196 ORTHO05D007758 1.9e-80 303.5 295 51.9
ECA238G1493 Erigeron canadensis HOM05D006196 ORTHO05D007758 2.8e-79 299.7 304 50.3
Phvul.007G023000 Phaseolus vulgaris HOM05D006196 ORTHO05D007758 4.8e-79 298.9 330 49.1
VMungo0720G0291 Vigna mungo HOM05D006196 ORTHO05D007758 4.8e-79 298.9 329 48.9
Medtr1g111960 Medicago truncatula HOM05D006196 ORTHO05D007758 3.1e-78 296.2 334 47.9
SGA_v2.0_scaffold13G06435 Striga asiatica HOM05D006196 ORTHO05D007758 3.1e-78 296.2 368 44.8
Psat0s1903g0040 Pisum sativum HOM05D006196 ORTHO05D007758 4.5e-77 292.4 321 49.8
Ca_25660_v3 Cicer arietinum L. HOM05D006196 ORTHO05D007758 1.0e-76 291.2 320 49.7
HanXRQChr07g0194291 Helianthus annuus HOM05D006196 ORTHO05D007758 1.0e-76 291.2 296 50.3
MBI01_g16486_MAGBIO Magnolia biondii HOM05D006196 ORTHO05D007758 1.0e-76 291.2 328 49.4
Sc09g0005310 Simmondsia chinensis HOM05D006196 ORTHO05D007758 3.8e-76 289.3 318 46.9
Medtr1g050385 Medicago truncatula HOM05D006196 ORTHO05D007758 3.2e-75 286.2 349 44.7
GSVIVG01010724001 Vitis vinifera HOM05D006196 ORTHO05D007758 4.2e-75 285.8 256 54.3
Lalb_Chr06g0166391 Lupinus albus HOM05D006196 ORTHO05D007758 9.3e-75 284.6 333 45.3
PSO801G0620 Papaver somniferum HOM05D006196 ORTHO05D007758 2.7e-74 283.1 317 49.2
TPR.G2427 Trifolium pratense HOM05D006196 ORTHO05D007758 4.6e-74 282.3 334 45.5
Hund06787 Selenicereus undatus HOM05D006196 ORTHO05D007758 6.0e-74 282.0 312 47.8
arahy.Tifrunner.gnm1.ann1.EL78PJ Arachis hypogaea HOM05D006196 ORTHO05D007758 1.8e-73 280.4 333 46.5
PSO339G1429 Papaver somniferum HOM05D006196 ORTHO05D007758 3.0e-73 279.6 320 48.4
Ah.13g074540 Amaranthus hybridus HOM05D006196 ORTHO05D007758 5.1e-73 278.9 312 48.4
arahy.Tifrunner.gnm1.ann1.N25XM0 Arachis hypogaea HOM05D006196 ORTHO05D007758 8.7e-73 278.1 333 45.9
Lj6g0028083 Lotus japonicus HOM05D006196 ORTHO05D007758 5.7e-72 275.4 330 46.7
Peaxi162Scf00173g00018 Petunia axillaris HOM05D006196 ORTHO05D007758 2.1e-71 273.5 282 52.5
TPR.G10627 Trifolium pratense HOM05D006196 ORTHO05D007758 2.8e-71 273.1 335 44.2
Ah.06g186650 Amaranthus hybridus HOM05D006196 ORTHO05D007758 3.7e-71 272.7 338 45.9
Psat6g093840 Pisum sativum HOM05D006196 ORTHO05D007758 8.2e-71 271.6 347 44.1
Glyma.10G111100 Glycine max HOM05D006196 ORTHO05D007758 1.1e-70 271.2 343 44.9
Dinv10931 Davidia involucrata HOM05D006196 ORTHO05D007758 1.0e-68 264.6 260 53.5
CDE08G0664 Ceratophyllum demersum HOM05D006196 ORTHO05D007758 1.3e-68 264.2 300 44.7
Ciclev10015947m.g Citrus clementina HOM05D006196 ORTHO05D007758 3.6e-66 256.1 343 44.9
DCAR_019003 Daucus carota HOM05D006196 ORTHO05D007758 1.8e-65 253.8 328 42.1
Prupe.2G067800 Prunus persica HOM05D006196 ORTHO05D007758 1.3e-60 237.7 334 44.3
Lalb_Chr01g0010431 Lupinus albus HOM05D006196 ORTHO05D007758 1.1e-59 234.6 375 38.4
MD07G1059000 Malus domestica HOM05D006196 ORTHO05D007758 1.9e-59 233.8 342 42.1
MD07G1059300 Malus domestica HOM05D006196 ORTHO05D007758 6.7e-57 225.3 348 40.5
ATR0820G221 Amborella trichopoda HOM05D006196 ORTHO05D007758 1.9e-51 207.2 264 41.7
unitig_46.g18638 Utricularia gibba HOM05D006196 ORTHO05D007758 4.1e-46 189.5 170 55.3
HPP92_026086 Vanilla planifolia HOM05D006196 ORTHO05D007758 4.2e-43 179.5 324 37.3
SMO146G0289 Selaginella moellendorffii HOM05D006196 ORTHO05D007758 6.1e-42 175.6 252 36.9
HPP92_025137 Vanilla planifolia HOM05D006196 ORTHO05D007758 2.0e-40 170.6 324 36.7
Ca_20266_v3 Cicer arietinum L. HOM05D006196 ORTHO05D007758 1.1e-38 164.9 214 45.3
Mapoly0016s0155 Marchantia polymorpha HOM05D006196 ORTHO05D007758 4.5e-37 159.5 203 38.9
AagrBONN_evm.TU.Sc2ySwM_228.4853 Anthoceros agrestis HOM05D006196 ORTHO05D007758 3.2e-35 153.3 202 42.6
Pp3c16_23080 Physcomitrium patens HOM05D006196 ORTHO05D007758 3.2e-35 153.3 210 39.0
Pp3c25_11830 Physcomitrium patens HOM05D006196 ORTHO05D007758 9.4e-35 151.8 210 39.0
Pp3c13_16840 Physcomitrium patens HOM05D006196 ORTHO05D007758 1.2e-34 151.4 205 38.5
Pp3c12_15440 Physcomitrium patens HOM05D006196 ORTHO05D007758 4.0e-33 146.4 200 38.0
Zm00001eb147080 Zea mays HOM05D006196 ORTHO05D007758 3.4e-32 143.3 311 34.1
Os01g0861700 Oryza sativa ssp. japonica HOM05D006196 ORTHO05D007758 7.5e-32 142.1 326 32.2
Pp3c6_4750 Physcomitrium patens HOM05D006196 ORTHO05D007758 1.3e-31 141.4 212 37.3
Pp3c3_21020 Physcomitrium patens HOM05D006196 ORTHO05D007758 6.3e-31 139.0 205 37.6
Pp3c16_23090 Physcomitrium patens HOM05D006196 ORTHO05D007758 1.4e-30 137.9 210 37.1
SMO198G0051 Selaginella moellendorffii HOM05D006196 ORTHO05D007758 9.1e-30 135.2 218 36.7
Pp3c25_11860 Physcomitrium patens HOM05D006196 ORTHO05D007758 6.1e-26 122.5 149 41.6
CBR_g31351 Chara braunii HOM05D006196 ORTHO05D007758 2.3e-20 104.0 182 37.4
arahy.Tifrunner.gnm1.ann1.5GK804 Arachis hypogaea HOM05D006196 ORTHO05D007758 9.8e-16 88.6 102 44.1
Actinidia02755 Actinidia chinensis HOM05D006196 ORTHO05D007758 2.0e-13 80.9 76 44.7
arahy.Tifrunner.gnm1.ann1.K1D1LI Arachis hypogaea HOM05D006196 ORTHO05D007758 7.8e-13 79.0 102 43.1
unitig_46.g18639 Utricularia gibba HOM05D006196 ORTHO05D007758 1.0e-12 78.6 98 45.9
Zm00001eb366830 Zea mays HOM05D006196 ORTHO05D007758 3.3e-11 73.6 110 41.8


User provided reference genes

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