Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g08454 Brassica carinata HOM05D002116 ORTHO05D002438 1.2e-47 193.4 136 100.0
BcaB02g08456 Brassica carinata HOM05D002116 ORTHO05D002438 2.1e-36 156.0 131 92.4
A04p05100 Brassica napus HOM05D002116 ORTHO05D002438 2.3e-27 125.9 97 76.3
BraA04t16221Z Brassica rapa HOM05D002116 ORTHO05D002438 2.3e-27 125.9 97 76.3
C08p29860 Brassica napus HOM05D002116 ORTHO05D002438 1.1e-24 117.1 76 84.2
BcaB01g00165 Brassica carinata HOM05D002116 ORTHO05D002438 1.4e-24 116.7 95 73.7
BcaC07g39792 Brassica carinata HOM05D002116 ORTHO05D002438 1.4e-24 116.7 76 82.9
BolC8t50597H Brassica oleracea HOM05D002116 ORTHO05D002438 1.4e-24 116.7 76 82.9
BcaC02g09699 Brassica carinata HOM05D002116 ORTHO05D002438 4.1e-24 115.2 97 71.1
BolC4t25325H Brassica oleracea HOM05D002116 ORTHO05D002438 4.1e-24 115.2 97 71.1
C04p37600 Brassica napus HOM05D002116 ORTHO05D002438 6.9e-24 114.4 97 70.1
A09p47650 Brassica napus HOM05D002116 ORTHO05D002438 1.5e-23 113.2 79 81.0
BraA09t40221Z Brassica rapa HOM05D002116 ORTHO05D002438 1.5e-23 113.2 79 81.0
Carub.0005s2132 Capsella rubella HOM05D002116 ORTHO05D002438 2.9e-22 109.0 95 70.5
Sp5g07730 Schrenkiella parvula HOM05D002116 ORTHO05D002438 3.8e-22 108.6 79 78.5
AT3G54720 Arabidopsis thaliana HOM05D002116 ORTHO05D002438 8.5e-22 107.5 79 78.5
Thhalv10010161m.g Eutrema salsugineum HOM05D002116 ORTHO05D002438 1.1e-21 107.1 96 69.8
CARHR164650 Cardamine hirsuta HOM05D002116 ORTHO05D002438 9.4e-21 104.0 92 70.7
Aa31sc392G10 Aethionema arabicum HOM05D002116 ORTHO05D002438 1.6e-20 103.2 89 70.8
AL5G35800 Arabidopsis lyrata HOM05D002116 ORTHO05D002438 3.9e-19 98.6 84 70.2
THA.LOC104825265 Tarenaya hassleriana HOM05D002116 ORTHO05D002438 9.7e-18 94.0 82 70.7
CiPaw.09G025000 Carya illinoinensis HOM05D002116 ORTHO05D002438 1.2e-15 87.0 71 66.2
FAN14G3679 Fragaria x ananassa HOM05D002116 ORTHO05D002438 1.2e-15 87.0 79 60.8
CiPaw.10G022000 Carya illinoinensis HOM05D002116 ORTHO05D002438 3.4e-15 85.5 74 63.5
FAN02G0379 Fragaria x ananassa HOM05D002116 ORTHO05D002438 5.9e-15 84.7 83 61.4
FvH4_6g21160 Fragaria vesca HOM05D002116 ORTHO05D002438 1.0e-14 84.0 79 59.5
FAN05G1646 Fragaria x ananassa HOM05D002116 ORTHO05D002438 1.7e-14 83.2 83 60.2
RcHm_v2.0_Chr3g0477621 Rosa chinensis HOM05D002116 ORTHO05D002438 3.8e-14 82.0 81 60.5
FAN05G1287 Fragaria x ananassa HOM05D002116 ORTHO05D002438 1.1e-13 80.5 83 59.0
MD14G1046000 Malus domestica HOM05D002116 ORTHO05D002438 1.9e-13 79.7 71 63.4
Lj1g0018014 Lotus japonicus HOM05D002116 ORTHO05D002438 2.5e-13 79.3 76 59.2
SGA_v2.0_scaffold392G50671 Striga asiatica HOM05D002116 ORTHO05D002438 2.5e-13 79.3 75 61.3
Actinidia37783 Actinidia chinensis HOM05D002116 ORTHO05D002438 3.2e-13 79.0 75 60.0
Haze_20091 Corylus avellana HOM05D002116 ORTHO05D002438 3.2e-13 79.0 67 64.2
QL07p025891 Quercus lobata HOM05D002116 ORTHO05D002438 3.2e-13 79.0 72 58.3
Glyma.03G205900 Glycine max HOM05D002116 ORTHO05D002438 4.2e-13 78.6 65 63.1
TAR633G0184 Trochodendron aralioides HOM05D002116 ORTHO05D002438 4.2e-13 78.6 69 60.9
VMungo1383G0155 Vigna mungo HOM05D002116 ORTHO05D002438 4.2e-13 78.6 75 58.7
COL.COLO4_29464 Corchorus olitorius HOM05D002116 ORTHO05D002438 5.5e-13 78.2 68 58.8
Gohir.D07G092700 Gossypium hirsutum HOM05D002116 ORTHO05D002438 5.5e-13 78.2 70 57.1
Medtr7g107100 Medicago truncatula HOM05D002116 ORTHO05D002438 7.2e-13 77.8 76 57.9
Duzib106G0200 Durio zibethinus HOM05D002116 ORTHO05D002438 1.2e-12 77.0 69 58.0
Gohir.A07G087800 Gossypium hirsutum HOM05D002116 ORTHO05D002438 1.2e-12 77.0 66 60.6
Gorai.001G099300 Gossypium raimondii HOM05D002116 ORTHO05D002438 1.2e-12 77.0 66 60.6
Prupe.7G088100 Prunus persica HOM05D002116 ORTHO05D002438 2.1e-12 76.3 77 61.0
CANSAT64G2053 Cannabis sativa HOM05D002116 ORTHO05D002438 2.7e-12 75.9 74 56.8
MD12G1047100 Malus domestica HOM05D002116 ORTHO05D002438 2.7e-12 75.9 78 61.5
PGR142G2179 Punica granatum HOM05D002116 ORTHO05D002438 4.7e-12 75.1 69 59.4
ClCG10G017890 Citrullus lanatus HOM05D002116 ORTHO05D002438 6.1e-12 74.7 79 54.4
Glyma.10G088000 Glycine max HOM05D002116 ORTHO05D002438 6.1e-12 74.7 71 54.9
Cfa020100 Carpinus fangiana HOM05D002116 ORTHO05D002438 7.9e-12 74.3 64 60.9
Dinv11910 Davidia involucrata HOM05D002116 ORTHO05D002438 7.9e-12 74.3 75 57.3
Thecc.05G182300 Theobroma cacao HOM05D002116 ORTHO05D002438 7.9e-12 74.3 68 58.8
Duzib093G1344 Durio zibethinus HOM05D002116 ORTHO05D002438 1.0e-11 73.9 69 56.5
Glyma.19G203400 Glycine max HOM05D002116 ORTHO05D002438 1.0e-11 73.9 84 53.6
Ca_09091_v3 Cicer arietinum L. HOM05D002116 ORTHO05D002438 1.4e-11 73.6 74 51.4
Atru.chr8.1252 Acer truncatum HOM05D002116 ORTHO05D002438 1.8e-11 73.2 80 53.8
Nn6g32464 Nelumbo nucifera HOM05D002116 ORTHO05D002438 1.8e-11 73.2 69 55.1
Phvul.001G199600 Phaseolus vulgaris HOM05D002116 ORTHO05D002438 1.8e-11 73.2 75 57.3
Potri.016G064300 Populus trichocarpa HOM05D002116 ORTHO05D002438 2.3e-11 72.8 62 61.3
Ciclev10011190m.g Citrus clementina HOM05D002116 ORTHO05D002438 3.9e-11 72.0 76 53.9
MELO3C009584.2 Cucumis melo HOM05D002116 ORTHO05D002438 3.9e-11 72.0 72 52.8
CsaV3_3G038400 Cucumis sativus L. HOM05D002116 ORTHO05D002438 3.9e-11 72.0 72 52.8
Lalb_Chr20g0111161 Lupinus albus HOM05D002116 ORTHO05D002438 3.9e-11 72.0 75 54.7
Sed0000029 Sechium edule HOM05D002116 ORTHO05D002438 3.9e-11 72.0 72 54.2
VMungo0720G0731 Vigna mungo HOM05D002116 ORTHO05D002438 6.7e-11 71.2 64 60.9
Cc06_g07060 Coffea canephora HOM05D002116 ORTHO05D002438 8.8e-11 70.9 73 53.4
Aqoxy1G00573 Aquilegia oxysepala HOM05D002116 ORTHO05D002438 1.1e-10 70.5 75 52.0
arahy.Tifrunner.gnm1.ann1.77RLVP Arachis hypogaea HOM05D002116 ORTHO05D002438 2.0e-10 69.7 76 55.3
arahy.Tifrunner.gnm1.ann1.R5ZN5G Arachis hypogaea HOM05D002116 ORTHO05D002438 2.0e-10 69.7 76 55.3
Migut.L01857 Erythranthe guttata HOM05D002116 ORTHO05D002438 2.0e-10 69.7 72 54.2
Sabra06G0152500 Salix brachista HOM05D002116 ORTHO05D002438 5.7e-10 68.2 62 58.1
Phvul.007G264800 Phaseolus vulgaris HOM05D002116 ORTHO05D002438 7.4e-10 67.8 65 61.5
Psat3g026520 Pisum sativum HOM05D002116 ORTHO05D002438 7.4e-10 67.8 68 54.4
Solyc11g045250.1 Solanum lycopersicum HOM05D002116 ORTHO05D002438 9.7e-10 67.4 71 54.9
GSVIVG01022505001 Vitis vinifera HOM05D002116 ORTHO05D002438 9.7e-10 67.4 67 55.2
CDE10G0810 Ceratophyllum demersum HOM05D002116 ORTHO05D002438 1.3e-09 67.0 72 48.6
TWI77G0852 Tripterygium wilfordii HOM05D002116 ORTHO05D002438 1.3e-09 67.0 77 51.9
Manes.08G038300 Manihot esculenta HOM05D002116 ORTHO05D002438 2.2e-09 66.2 81 48.1
PSO384G1233 Papaver somniferum HOM05D002116 ORTHO05D002438 2.8e-09 65.9 67 50.7
Sopen11g020710 Solanum pennellii HOM05D002116 ORTHO05D002438 2.8e-09 65.9 70 54.3
Nitab4.5_0005508g0010 Nicotiana tabacum HOM05D002116 ORTHO05D002438 3.7e-09 65.5 95 46.3
CAN.G13.11 Capsicum annuum HOM05D002116 ORTHO05D002438 4.8e-09 65.1 61 60.7
CSS0001789 Camellia sinensis var. sinensis HOM05D002116 ORTHO05D002438 6.3e-09 64.7 64 56.2
CSS0027659 Camellia sinensis var. sinensis HOM05D002116 ORTHO05D002438 6.3e-09 64.7 64 56.2
CDE10G1229 Ceratophyllum demersum HOM05D002116 ORTHO05D002438 6.3e-09 64.7 72 48.6
PSO339G3556 Papaver somniferum HOM05D002116 ORTHO05D002438 6.3e-09 64.7 67 50.7
Hund15033 Selenicereus undatus HOM05D002116 ORTHO05D002438 6.3e-09 64.7 74 54.1
unitig_85.g27222 Utricularia gibba HOM05D002116 ORTHO05D002438 6.3e-09 64.7 66 57.6
Nitab4.5_0000117g0080 Nicotiana tabacum HOM05D002116 ORTHO05D002438 8.2e-09 64.3 75 52.0
MSTRG.26569 Avicennia marina HOM05D002116 ORTHO05D002438 1.1e-08 63.9 61 59.0
ECA238G4566 Erigeron canadensis HOM05D002116 ORTHO05D002438 3.1e-08 62.4 76 51.3
Sc22g0003020 Simmondsia chinensis HOM05D002116 ORTHO05D002438 9.1e-08 60.8 61 54.1
DCAR_013467 Daucus carota HOM05D002116 ORTHO05D002438 1.5e-07 60.1 66 51.5
Peaxi162Scf00210g00008 Petunia axillaris HOM05D002116 ORTHO05D002438 1.5e-07 60.1 69 53.6
HanXRQChr07g0197011 Helianthus annuus HOM05D002116 ORTHO05D002438 2.0e-07 59.7 72 50.0
ATR0697G073 Amborella trichopoda HOM05D002116 ORTHO05D002438 2.6e-07 59.3 71 46.5
Ah.02g127290 Amaranthus hybridus HOM05D002116 ORTHO05D002438 3.4e-07 58.9 55 56.4
EL10Ac3g06276 Beta vulgaris HOM05D002116 ORTHO05D002438 3.4e-07 58.9 61 52.5
Sed0020520 Sechium edule HOM05D002116 ORTHO05D002438 5.9e-07 58.2 72 45.8
Lsat_1_v5_gn_2_102120 Lactuca sativa HOM05D002116 ORTHO05D002438 1.7e-06 56.6 57 54.4
SGA_v2.0_scaffold10G05168 Striga asiatica HOM05D002116 ORTHO05D002438 3.8e-06 55.5 75 44.0
Zm00001eb153710 Zea mays HOM05D002116 ORTHO05D002438 3.8e-06 55.5 75 46.7
Sed0022385 Sechium edule HOM05D002116 ORTHO05D002438 5.0e-06 55.1 72 44.4


User provided reference genes

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