Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g08443 Brassica carinata HOM05D003212 ORTHO05D003959 5.6e-122 441.0 237 100.0
BolC4t25379H Brassica oleracea HOM05D003212 ORTHO05D003959 9.9e-111 403.7 234 92.7
BcaC02g09067 Brassica carinata HOM05D003212 ORTHO05D003959 1.3e-110 403.3 234 92.7
C04p38050 Brassica napus HOM05D003212 ORTHO05D003959 1.3e-110 403.3 234 92.7
A04p05360 Brassica napus HOM05D003212 ORTHO05D003959 4.9e-110 401.4 231 93.1
BraA04t16236Z Brassica rapa HOM05D003212 ORTHO05D003959 4.9e-110 401.4 231 93.1
BcaC08g44683 Brassica carinata HOM05D003212 ORTHO05D003959 1.1e-104 383.6 228 89.0
C06p22180 Brassica napus HOM05D003212 ORTHO05D003959 1.1e-104 383.6 228 89.0
BolC6t37404H Brassica oleracea HOM05D003212 ORTHO05D003959 1.1e-104 383.6 228 89.0
BcaB02g07736 Brassica carinata HOM05D003212 ORTHO05D003959 3.1e-104 382.1 235 88.1
Thhalv10010334m.g Eutrema salsugineum HOM05D003212 ORTHO05D003959 2.9e-102 375.6 233 86.7
AL5G35520 Arabidopsis lyrata HOM05D003212 ORTHO05D003959 1.9e-101 372.9 233 85.0
CARHR164370 Cardamine hirsuta HOM05D003212 ORTHO05D003959 1.9e-101 372.9 233 85.0
Sp5g07950 Schrenkiella parvula HOM05D003212 ORTHO05D003959 3.2e-101 372.1 233 85.8
A07p22130 Brassica napus HOM05D003212 ORTHO05D003959 5.5e-101 371.3 230 85.7
BraA07t29896Z Brassica rapa HOM05D003212 ORTHO05D003959 7.1e-101 370.9 230 85.2
AT3G54470 Arabidopsis thaliana HOM05D003212 ORTHO05D003959 3.5e-100 368.6 233 84.5
Aa31LG1G5360 Aethionema arabicum HOM05D003212 ORTHO05D003959 1.6e-97 359.8 235 82.6
Carub.0005s2109 Capsella rubella HOM05D003212 ORTHO05D003959 8.2e-97 357.5 231 82.3
CiPaw.14G006800 Carya illinoinensis HOM05D003212 ORTHO05D003959 3.2e-93 345.5 235 76.2
THA.LOC104824191 Tarenaya hassleriana HOM05D003212 ORTHO05D003959 4.2e-93 345.1 231 78.8
QL04p014886 Quercus lobata HOM05D003212 ORTHO05D003959 1.8e-91 339.7 236 77.1
Haze_03071 Corylus avellana HOM05D003212 ORTHO05D003959 2.3e-91 339.3 233 76.4
QL04p014524 Quercus lobata HOM05D003212 ORTHO05D003959 3.9e-91 338.6 236 76.7
ClCG01G007740 Citrullus lanatus HOM05D003212 ORTHO05D003959 3.3e-90 335.5 238 73.1
Potri.003G198501 Populus trichocarpa HOM05D003212 ORTHO05D003959 3.3e-90 335.5 233 74.7
Sed0013182 Sechium edule HOM05D003212 ORTHO05D003959 3.3e-90 335.5 240 73.8
MELO3C005122.2 Cucumis melo HOM05D003212 ORTHO05D003959 4.3e-90 335.1 238 73.5
Potri.T125906 Populus trichocarpa HOM05D003212 ORTHO05D003959 4.3e-90 335.1 233 74.2
Potri.001G026300 Populus trichocarpa HOM05D003212 ORTHO05D003959 5.7e-90 334.7 233 73.8
Prupe.2G032600 Prunus persica HOM05D003212 ORTHO05D003959 5.7e-90 334.7 239 72.4
CsaV3_5G024820 Cucumis sativus L. HOM05D003212 ORTHO05D003959 1.3e-89 333.6 238 73.5
Sabra01G0019400 Salix brachista HOM05D003212 ORTHO05D003959 2.8e-89 332.4 233 73.8
Sed0011268 Sechium edule HOM05D003212 ORTHO05D003959 4.8e-89 331.6 233 74.2
MD09G1262400 Malus domestica HOM05D003212 ORTHO05D003959 8.2e-89 330.9 240 71.7
Sabra03G0147800 Salix brachista HOM05D003212 ORTHO05D003959 1.4e-88 330.1 233 73.4
CANSAT80G2392 Cannabis sativa HOM05D003212 ORTHO05D003959 1.8e-88 329.7 231 74.5
Atru.chr12.1386 Acer truncatum HOM05D003212 ORTHO05D003959 5.3e-88 328.2 239 72.4
FvH4_7g02810 Fragaria vesca HOM05D003212 ORTHO05D003959 3.4e-87 325.5 239 72.4
RcHm_v2.0_Chr1g0323241 Rosa chinensis HOM05D003212 ORTHO05D003959 3.4e-87 325.5 232 73.7
FAN10G3499 Fragaria x ananassa HOM05D003212 ORTHO05D003959 5.9e-87 324.7 241 71.8
FAN01G2682 Fragaria x ananassa HOM05D003212 ORTHO05D003959 7.7e-87 324.3 239 72.0
Ciclev10001014m.g Citrus clementina HOM05D003212 ORTHO05D003959 1.7e-86 323.2 235 72.3
FAN06G3951 Fragaria x ananassa HOM05D003212 ORTHO05D003959 2.9e-86 322.4 239 72.0
Manes.11G004200 Manihot esculenta HOM05D003212 ORTHO05D003959 6.5e-86 321.2 231 71.9
Gorai.009G432600 Gossypium raimondii HOM05D003212 ORTHO05D003959 1.1e-85 320.5 231 70.6
Gohir.D05G360100 Gossypium hirsutum HOM05D003212 ORTHO05D003959 1.4e-85 320.1 231 70.6
Lsat_1_v5_gn_5_157360 Lactuca sativa HOM05D003212 ORTHO05D003959 1.4e-85 320.1 238 71.4
Gohir.A04G028000 Gossypium hirsutum HOM05D003212 ORTHO05D003959 2.5e-85 319.3 231 70.1
TWI38G0920 Tripterygium wilfordii HOM05D003212 ORTHO05D003959 4.2e-85 318.5 236 72.5
PGR031G0586 Punica granatum HOM05D003212 ORTHO05D003959 5.5e-85 318.2 233 72.5
Duzib268G1229 Durio zibethinus HOM05D003212 ORTHO05D003959 7.2e-85 317.8 231 69.7
Oeu003925.2 Olea europaea HOM05D003212 ORTHO05D003959 7.2e-85 317.8 236 70.3
Lj7A581T52 Lonicera japonica HOM05D003212 ORTHO05D003959 9.4e-85 317.4 235 69.4
Phvul.005G029300 Phaseolus vulgaris HOM05D003212 ORTHO05D003959 9.4e-85 317.4 238 72.3
Cc02_g26670 Coffea canephora HOM05D003212 ORTHO05D003959 1.2e-84 317.0 231 72.3
Thecc.07G075400 Theobroma cacao HOM05D003212 ORTHO05D003959 2.1e-84 316.2 231 69.3
SalBow5G4847 Salvia bowleyana HOM05D003212 ORTHO05D003959 2.7e-84 315.8 242 68.2
COL.COLO4_09453 Corchorus olitorius HOM05D003212 ORTHO05D003959 3.6e-84 315.5 231 70.1
Duzib213G0398 Durio zibethinus HOM05D003212 ORTHO05D003959 4.7e-84 315.1 231 68.8
Hma1.2p1_0384F.1_g141010 Hydrangea macrophylla HOM05D003212 ORTHO05D003959 6.1e-84 314.7 235 70.2
Migut.B01220 Erythranthe guttata HOM05D003212 ORTHO05D003959 7.9e-84 314.3 240 67.5
Oeu056551.1 Olea europaea HOM05D003212 ORTHO05D003959 7.9e-84 314.3 231 70.6
CAN.G745.39 Capsicum annuum HOM05D003212 ORTHO05D003959 1.0e-83 313.9 234 70.1
VMungo1080G0024 Vigna mungo HOM05D003212 ORTHO05D003959 1.0e-83 313.9 238 71.0
Ah.12g062950 Amaranthus hybridus HOM05D003212 ORTHO05D003959 1.4e-83 313.5 231 72.3
arahy.Tifrunner.gnm1.ann1.HVGJ4H Arachis hypogaea HOM05D003212 ORTHO05D003959 1.4e-83 313.5 235 71.1
SGA_v2.0_scaffold124G33627 Striga asiatica HOM05D003212 ORTHO05D003959 1.4e-83 313.5 237 69.2
ECA248G3712 Erigeron canadensis HOM05D003212 ORTHO05D003959 1.8e-83 313.2 233 71.2
Atru.chr12.1389 Acer truncatum HOM05D003212 ORTHO05D003959 2.3e-83 312.8 240 68.8
Gohir.A13G144600 Gossypium hirsutum HOM05D003212 ORTHO05D003959 2.3e-83 312.8 237 67.1
Sopen11g027550 Solanum pennellii HOM05D003212 ORTHO05D003959 2.3e-83 312.8 234 69.2
EL10Ac2g02822 Beta vulgaris HOM05D003212 ORTHO05D003959 3.9e-83 312.0 240 72.9
Solyc11g068830.2 Solanum lycopersicum HOM05D003212 ORTHO05D003959 3.9e-83 312.0 234 69.2
PGSC0003DMG400019620 Solanum tuberosum HOM05D003212 ORTHO05D003959 3.9e-83 312.0 231 69.7
Lj3g0024329 Lotus japonicus HOM05D003212 ORTHO05D003959 6.7e-83 311.2 238 70.2
AUR62037200 Chenopodium quinoa HOM05D003212 ORTHO05D003959 8.8e-83 310.8 240 71.2
Gorai.013G167000 Gossypium raimondii HOM05D003212 ORTHO05D003959 8.8e-83 310.8 231 69.3
Lalb_Chr14g0366121 Lupinus albus HOM05D003212 ORTHO05D003959 8.8e-83 310.8 238 69.3
Ca_23514_v3 Cicer arietinum L. HOM05D003212 ORTHO05D003959 1.1e-82 310.5 238 69.7
Medtr3g017580 Medicago truncatula HOM05D003212 ORTHO05D003959 1.1e-82 310.5 238 69.3
Nitab4.5_0000893g0050 Nicotiana tabacum HOM05D003212 ORTHO05D003959 1.1e-82 310.5 232 68.1
Peaxi162Scf01010g00217 Petunia axillaris HOM05D003212 ORTHO05D003959 1.5e-82 310.1 234 69.2
AUR62026849 Chenopodium quinoa HOM05D003212 ORTHO05D003959 2.0e-82 309.7 240 71.2
Gohir.D13G149300 Gossypium hirsutum HOM05D003212 ORTHO05D003959 2.6e-82 309.3 231 68.8
arahy.Tifrunner.gnm1.ann1.HRMJ8R Arachis hypogaea HOM05D003212 ORTHO05D003959 4.4e-82 308.5 235 70.2
Glyma.11G154200 Glycine max HOM05D003212 ORTHO05D003959 5.7e-82 308.1 238 69.7
Medtr1g025060 Medicago truncatula HOM05D003212 ORTHO05D003959 5.7e-82 308.1 238 69.3
Ca_18881_v3 Cicer arietinum L. HOM05D003212 ORTHO05D003959 7.4e-82 307.8 238 68.5
HanXRQChr01g0008251 Helianthus annuus HOM05D003212 ORTHO05D003959 7.4e-82 307.8 236 69.9
Psat5g219440 Pisum sativum HOM05D003212 ORTHO05D003959 9.7e-82 307.4 238 68.5
MSTRG.20521 Avicennia marina HOM05D003212 ORTHO05D003959 1.3e-81 307.0 233 67.4
Dinv32034 Davidia involucrata HOM05D003212 ORTHO05D003959 1.3e-81 307.0 240 67.5
Rhsim01G0123800 Rhododendron simsii HOM05D003212 ORTHO05D003959 2.2e-81 306.2 234 67.1
Hund13345 Selenicereus undatus HOM05D003212 ORTHO05D003959 2.2e-81 306.2 241 68.9
CSS0010475 Camellia sinensis var. sinensis HOM05D003212 ORTHO05D003959 2.8e-81 305.8 237 66.7
CSS0011806 Camellia sinensis var. sinensis HOM05D003212 ORTHO05D003959 2.8e-81 305.8 237 66.7
Hund15723 Selenicereus undatus HOM05D003212 ORTHO05D003959 2.8e-81 305.8 237 70.0
Aqoxy2G00340 Aquilegia oxysepala HOM05D003212 ORTHO05D003959 4.8e-81 305.1 245 66.1
Psat0s1718g0040 Pisum sativum HOM05D003212 ORTHO05D003959 6.3e-81 304.7 229 67.2
unitig_26.g9606 Utricularia gibba HOM05D003212 ORTHO05D003959 6.3e-81 304.7 237 67.5
Nn7g36634 Nelumbo nucifera HOM05D003212 ORTHO05D003959 8.2e-81 304.3 232 70.3
TPR.G17794 Trifolium pratense HOM05D003212 ORTHO05D003959 1.8e-80 303.1 235 67.7
Lalb_Chr03g0032831 Lupinus albus HOM05D003212 ORTHO05D003959 2.4e-80 302.8 232 68.5
Sc11g0006540 Simmondsia chinensis HOM05D003212 ORTHO05D003959 2.4e-80 302.8 241 68.9
Actinidia21523 Actinidia chinensis HOM05D003212 ORTHO05D003959 3.1e-80 302.4 238 66.4
Oeu002655.1 Olea europaea HOM05D003212 ORTHO05D003959 3.1e-80 302.4 233 66.5
Medtr8g038390 Medicago truncatula HOM05D003212 ORTHO05D003959 4.1e-80 302.0 229 67.2
MSTRG.16992 Avicennia marina HOM05D003212 ORTHO05D003959 5.3e-80 301.6 242 66.1
PSO384G1532 Papaver somniferum HOM05D003212 ORTHO05D003959 5.3e-80 301.6 233 69.5
TAR369G1042 Trochodendron aralioides HOM05D003212 ORTHO05D003959 7.0e-80 301.2 232 69.8
Ciclev10004916m.g Citrus clementina HOM05D003212 ORTHO05D003959 9.1e-80 300.8 235 68.5
vmacro12692 Vaccinium macrocarpon HOM05D003212 ORTHO05D003959 2.0e-79 299.7 237 67.1
Ca_10473_v3 Cicer arietinum L. HOM05D003212 ORTHO05D003959 2.6e-79 299.3 229 66.4
Glyma.13G198700 Glycine max HOM05D003212 ORTHO05D003959 2.6e-79 299.3 228 68.9
Lj3g0002083 Lotus japonicus HOM05D003212 ORTHO05D003959 2.6e-79 299.3 228 68.4
Migut.N01834 Erythranthe guttata HOM05D003212 ORTHO05D003959 5.9e-79 298.1 232 67.2
Phvul.011G207800 Phaseolus vulgaris HOM05D003212 ORTHO05D003959 5.9e-79 298.1 228 68.0
PSO339G4798 Papaver somniferum HOM05D003212 ORTHO05D003959 7.7e-79 297.7 233 68.7
TPR.G36892 Trifolium pratense HOM05D003212 ORTHO05D003959 7.7e-79 297.7 229 66.8
arahy.Tifrunner.gnm1.ann1.28N5NC Arachis hypogaea HOM05D003212 ORTHO05D003959 5.0e-78 295.0 228 67.5
DCAR_006596 Daucus carota HOM05D003212 ORTHO05D003959 6.5e-78 294.7 201 73.1
arahy.Tifrunner.gnm1.ann1.J24RTT Arachis hypogaea HOM05D003212 ORTHO05D003959 2.5e-77 292.7 228 67.1
HanXRQChr13g0406671 Helianthus annuus HOM05D003212 ORTHO05D003959 4.2e-77 292.0 230 65.7
SGA_v2.0_scaffold232G43508 Striga asiatica HOM05D003212 ORTHO05D003959 5.5e-77 291.6 232 63.4
VMungo1127G0513 Vigna mungo HOM05D003212 ORTHO05D003959 1.2e-76 290.4 228 65.8
ATR0789G118 Amborella trichopoda HOM05D003212 ORTHO05D003959 1.6e-76 290.0 230 67.8
CDE08G1532 Ceratophyllum demersum HOM05D003212 ORTHO05D003959 1.6e-76 290.0 236 65.7
AUR62001997 Chenopodium quinoa HOM05D003212 ORTHO05D003959 6.1e-76 288.1 233 67.0
Peaxi162Scf00010g03311 Petunia axillaris HOM05D003212 ORTHO05D003959 3.9e-75 285.4 234 65.4
CDE09G0923 Ceratophyllum demersum HOM05D003212 ORTHO05D003959 1.1e-72 277.3 236 62.7
BcaC02g12603 Brassica carinata HOM05D003212 ORTHO05D003959 1.9e-69 266.5 232 69.8
SEGI_05174 Sequoiadendron giganteum HOM05D003212 ORTHO05D003959 2.0e-66 256.5 229 60.7
HPP92_003235 Vanilla planifolia HOM05D003212 ORTHO05D003959 4.4e-66 255.4 236 57.6
Os01g0951200 Oryza sativa ssp. japonica HOM05D003212 ORTHO05D003959 2.8e-65 252.7 235 57.9
Mapoly0052s0107 Marchantia polymorpha HOM05D003212 ORTHO05D003959 5.0e-62 241.9 235 54.0
Nitab4.5_0001135g0170 Nicotiana tabacum HOM05D003212 ORTHO05D003959 1.1e-61 240.7 186 66.7
Pp3c3_16990 Physcomitrium patens HOM05D003212 ORTHO05D003959 1.5e-61 240.4 234 54.7
SMO259G0031 Selaginella moellendorffii HOM05D003212 ORTHO05D003959 2.7e-60 236.1 235 55.3
Os01g0951400 Oryza sativa ssp. japonica HOM05D003212 ORTHO05D003959 4.7e-60 235.3 233 53.2
AagrBONN_evm.TU.Sc2ySwM_117.3888 Anthoceros agrestis HOM05D003212 ORTHO05D003959 9.8e-58 227.6 240 52.1
SalBow5G0323 Salvia bowleyana HOM05D003212 ORTHO05D003959 3.7e-57 225.7 157 73.9
SalBow5G4173 Salvia bowleyana HOM05D003212 ORTHO05D003959 3.7e-57 225.7 157 73.9
CBR_g41363 Chara braunii HOM05D003212 ORTHO05D003959 2.7e-55 219.5 211 55.0
Zm00001eb140940 Zea mays HOM05D003212 ORTHO05D003959 2.7e-55 219.5 234 53.8
PRCOL_00000883 Prasinoderma coloniale HOM05D003212 ORTHO05D003959 3.5e-55 219.2 244 48.4
MCO07G762 Micromonas commoda HOM05D003212 ORTHO05D003959 2.9e-54 216.1 240 50.0
HPP92_003228 Vanilla planifolia HOM05D003212 ORTHO05D003959 2.9e-54 216.1 165 66.1
Zm00001eb140930 Zea mays HOM05D003212 ORTHO05D003959 3.8e-54 215.7 238 51.3
Cre01.g048950 Chlamydomonas reinhardtii HOM05D003212 ORTHO05D003959 5.0e-54 215.3 241 48.5
Aqoxy3G03071 Aquilegia oxysepala HOM05D003212 ORTHO05D003959 1.5e-53 213.8 146 76.7
Pp3c13_16830 Physcomitrium patens HOM05D003212 ORTHO05D003959 5.5e-53 211.8 199 56.3
FAN03G0414 Fragaria x ananassa HOM05D003212 ORTHO05D003959 7.5e-50 201.4 147 71.4
Ca_28375_v3 Cicer arietinum L. HOM05D003212 ORTHO05D003959 1.2e-39 167.5 145 57.9
Ca_30130_v3 Cicer arietinum L. HOM05D003212 ORTHO05D003959 1.2e-39 167.5 145 57.9
SMO181G0021 Selaginella moellendorffii HOM05D003212 ORTHO05D003959 1.6e-39 167.2 233 46.4
vmacro13746 Vaccinium macrocarpon HOM05D001576 ORTHO05D000401 3.5e-39 166.0 201 45.8
RhsimUnG0111600 Rhododendron simsii HOM05D001576 ORTHO05D000401 1.0e-38 164.5 220 45.0
Rhsim07G0066400 Rhododendron simsii HOM05D001576 ORTHO05D000401 1.3e-38 164.1 220 45.0
AUR62003805 Chenopodium quinoa HOM05D003212 ORTHO05D003959 2.5e-37 159.8 108 75.0
ECA232G0145 Erigeron canadensis HOM05D003212 ORTHO05D003959 8.0e-36 154.8 98 80.6
SalBow5G1158 Salvia bowleyana HOM05D003212 ORTHO05D003959 8.0e-36 154.8 102 72.5
Atru.chr12.1029 Acer truncatum HOM05D003212 ORTHO05D003959 7.5e-34 148.3 120 60.8
Cpa.g.sc223.9 Carica papaya HOM05D003212 ORTHO05D003959 1.7e-33 147.1 94 79.8
vmacro22863 Vaccinium macrocarpon HOM05D001576 ORTHO05D000401 1.1e-32 144.4 172 45.3
MD17G1257300 Malus domestica HOM05D003212 ORTHO05D003959 7.3e-29 131.7 89 70.8
Glyma.15G237000 Glycine max HOM05D003212 ORTHO05D003959 3.1e-27 126.3 91 71.4
Haze_03625 Corylus avellana HOM05D003212 ORTHO05D003959 3.3e-21 106.3 68 82.4
SMO250G0012 Selaginella moellendorffii HOM05D000515 ORTHO05D001911 1.7e-17 94.0 87 52.9
FvH4_4g15670 Fragaria vesca HOM05D013275 ORTHO05D003959 2.9e-17 93.2 148 44.6
SMO259G0030 Selaginella moellendorffii HOM05D000515 ORTHO05D001911 6.4e-17 92.0 87 51.7
Migut.O00503 Erythranthe guttata HOM05D003212 ORTHO05D003959 3.5e-15 86.3 89 51.7
FvH4_3g03840 Fragaria vesca HOM05D013275 ORTHO05D015659 6.0e-15 85.5 64 67.2
Pp3s46_240 Physcomitrium patens HOM05D003658 ORTHO05D004457 5.6e-13 79.0 184 32.6
BcaC08g43728 Brassica carinata HOM05D003212 ORTHO05D003959 5.3e-11 72.4 69 53.6
RcHm_v2.0_Chr5g0023651 Rosa chinensis HOM05D003212 ORTHO05D015659 2.0e-10 70.5 46 73.9
RcHm_v2.0_Chr4g0435201 Rosa chinensis HOM05D003212 ORTHO05D015659 4.4e-10 69.3 46 73.9
MD17G1257400 Malus domestica HOM05D003212 ORTHO05D003959 1.1e-08 64.7 60 63.3
SalBow5G1921 Salvia bowleyana HOM05D003212 ORTHO05D003959 1.6e-07 60.8 68 48.5
Zm00001eb058560 Zea mays HOM05D003212 ORTHO05D003959 1.0e-06 58.2 44 65.9
Zm00001eb425780 Zea mays HOM05D003212 ORTHO05D003959 1.0e-06 58.2 44 65.9
SalBow5G3827 Salvia bowleyana HOM05D003212 ORTHO05D003959 2.3e-06 57.0 68 45.6
Zm00001eb175910 Zea mays HOM05D003212 ORTHO05D003959 3.0e-06 56.6 44 63.6
GSVIVG01000650001 Vitis vinifera HOM05D003212 ORTHO05D003959 5.1e-06 55.8 64 51.6


User provided reference genes

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