Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g08423 Brassica carinata HOM05D005580 ORTHO05D006395 3.6e-124 448.4 242 100.0
BraA04t16163Z Brassica rapa HOM05D005580 ORTHO05D006395 2.5e-85 319.3 183 94.0
BcaC02g09755 Brassica carinata HOM05D005580 ORTHO05D006395 4.3e-85 318.5 183 95.1
C04p36960 Brassica napus HOM05D005580 ORTHO05D006395 4.3e-85 318.5 183 95.1
BolC4t25261H Brassica oleracea HOM05D005580 ORTHO05D006395 4.3e-85 318.5 183 95.1
A04p04530 Brassica napus HOM05D005580 ORTHO05D006395 4.8e-84 315.1 183 92.9
A09p48340 Brassica napus HOM05D005580 ORTHO05D006395 4.6e-79 298.5 181 91.2
BraA09t40286Z Brassica rapa HOM05D005580 ORTHO05D006395 4.6e-79 298.5 181 91.2
Sp5g07050 Schrenkiella parvula HOM05D005580 ORTHO05D006395 6.0e-79 298.1 181 92.3
C08p30460 Brassica napus HOM05D005580 ORTHO05D006395 1.9e-77 293.1 181 89.5
C08p30630 Brassica napus HOM05D005580 ORTHO05D006395 4.3e-77 292.0 181 89.5
BolC8t50680H Brassica oleracea HOM05D005580 ORTHO05D006395 1.6e-76 290.0 181 89.0
BcaB01g00102 Brassica carinata HOM05D005580 ORTHO05D006395 2.8e-76 289.3 182 86.8
Thhalv10010708m.g Eutrema salsugineum HOM05D005580 ORTHO05D006395 4.8e-76 288.5 181 89.0
BcaC07g39844 Brassica carinata HOM05D005580 ORTHO05D006395 8.1e-76 287.7 181 89.0
AT3G55420 Arabidopsis thaliana HOM05D005580 ORTHO05D006395 1.2e-74 283.9 181 89.0
AL5G36570 Arabidopsis lyrata HOM05D005580 ORTHO05D006395 7.6e-74 281.2 181 87.8
CARHR165440 Cardamine hirsuta HOM05D005580 ORTHO05D006395 1.3e-73 280.4 181 87.3
Carub.0005s2214 Capsella rubella HOM05D005580 ORTHO05D006395 1.9e-72 276.6 160 88.8
BcaC07g39859 Brassica carinata HOM05D005580 ORTHO05D006395 9.0e-67 257.7 181 81.8
THA.LOC104810028 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 9.3e-64 247.7 186 73.7
Aa31LG10G10450 Aethionema arabicum HOM05D005580 ORTHO05D006395 9.6e-61 237.7 182 76.4
THA.LOC104807715 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 1.5e-58 230.3 187 69.5
THA.LOC104824274 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 5.0e-57 225.3 192 67.2
Lsat_1_v5_gn_8_15580 Lactuca sativa HOM05D005580 ORTHO05D006395 1.1e-56 224.2 183 69.9
Peaxi162Scf00886g00003 Petunia axillaris HOM05D005580 ORTHO05D006395 1.9e-56 223.4 169 71.0
Sabra08G0040500 Salix brachista HOM05D005580 ORTHO05D006395 2.5e-56 223.0 190 64.7
MD07G1198300 Malus domestica HOM05D005580 ORTHO05D006395 3.2e-56 222.6 166 71.1
Sabra10G0157500 Salix brachista HOM05D005580 ORTHO05D006395 3.2e-56 222.6 191 66.0
Manes.07G116200 Manihot esculenta HOM05D005580 ORTHO05D006395 5.5e-56 221.9 200 62.5
Thecc.10G042400 Theobroma cacao HOM05D005580 ORTHO05D006395 5.5e-56 221.9 189 69.3
Phvul.008G010700 Phaseolus vulgaris HOM05D005580 ORTHO05D006395 7.2e-56 221.5 177 66.7
MD01G1134100 Malus domestica HOM05D005580 ORTHO05D006395 9.3e-56 221.1 166 70.5
Glyma.02G091600 Glycine max HOM05D005580 ORTHO05D006395 1.2e-55 220.7 177 66.7
Sed0020308 Sechium edule HOM05D005580 ORTHO05D006395 1.2e-55 220.7 167 69.5
Potri.008G055800 Populus trichocarpa HOM05D005580 ORTHO05D006395 1.6e-55 220.3 190 66.8
Glyma.18G291400 Glycine max HOM05D005580 ORTHO05D006395 2.1e-55 219.9 177 66.1
Cpa.g.sc1.404 Carica papaya HOM05D005580 ORTHO05D006395 3.5e-55 219.2 195 63.6
ClCG09G019730 Citrullus lanatus HOM05D005580 ORTHO05D006395 3.5e-55 219.2 167 68.9
Prupe.2G235300 Prunus persica HOM05D005580 ORTHO05D006395 3.5e-55 219.2 166 70.5
vmacro07170 Vaccinium macrocarpon HOM05D005580 ORTHO05D006395 3.5e-55 219.2 173 67.6
VMungo1383G1027 Vigna mungo HOM05D005580 ORTHO05D006395 3.5e-55 219.2 177 66.1
CiPaw.02G183900 Carya illinoinensis HOM05D005580 ORTHO05D006395 4.6e-55 218.8 201 61.2
Potri.010G203900 Populus trichocarpa HOM05D005580 ORTHO05D006395 4.6e-55 218.8 190 66.3
MELO3C021630.2 Cucumis melo HOM05D005580 ORTHO05D006395 6.1e-55 218.4 167 68.9
Gohir.D10G228400 Gossypium hirsutum HOM05D005580 ORTHO05D006395 6.1e-55 218.4 168 69.0
Gorai.011G260800 Gossypium raimondii HOM05D005580 ORTHO05D006395 6.1e-55 218.4 168 69.0
Sed0002022 Sechium edule HOM05D005580 ORTHO05D006395 6.1e-55 218.4 167 67.7
SalBow6G2402 Salvia bowleyana HOM05D005580 ORTHO05D006395 7.9e-55 218.0 160 71.2
Cfa001474 Carpinus fangiana HOM05D005580 ORTHO05D006395 1.0e-54 217.6 187 63.6
FAN01G0694 Fragaria x ananassa HOM05D005580 ORTHO05D006395 1.0e-54 217.6 171 69.0
FAN01G2215 Fragaria x ananassa HOM05D005580 ORTHO05D006395 1.0e-54 217.6 171 69.0
Rhsim03G0130700 Rhododendron simsii HOM05D005580 ORTHO05D006395 1.3e-54 217.2 174 66.7
Eucgr.G02934 Eucalyptus grandis HOM05D005580 ORTHO05D006395 1.8e-54 216.9 167 68.3
Gohir.A10G218800 Gossypium hirsutum HOM05D005580 ORTHO05D006395 1.8e-54 216.9 168 68.5
unitig_8.g3317 Utricularia gibba HOM05D005580 ORTHO05D006395 3.0e-54 216.1 183 64.5
HanXRQChr14g0457951 Helianthus annuus HOM05D005580 ORTHO05D006395 5.1e-54 215.3 162 69.1
CsaV3_5G026670 Cucumis sativus L. HOM05D005580 ORTHO05D006395 6.7e-54 214.9 168 67.3
Sopen05g032940 Solanum pennellii HOM05D005580 ORTHO05D006395 6.7e-54 214.9 167 70.7
CANSAT56G2481 Cannabis sativa HOM05D005580 ORTHO05D006395 8.7e-54 214.5 170 68.2
Nitab4.5_0013062g0010 Nicotiana tabacum HOM05D005580 ORTHO05D006395 8.7e-54 214.5 164 70.1
Psat3g161760 Pisum sativum HOM05D005580 ORTHO05D006395 8.7e-54 214.5 167 67.1
Lj1g0024567 Lotus japonicus HOM05D005580 ORTHO05D006395 1.1e-53 214.2 181 64.6
Oeu064380.1 Olea europaea HOM05D005580 ORTHO05D006395 1.1e-53 214.2 194 61.3
COL.COLO4_15040 Corchorus olitorius HOM05D005580 ORTHO05D006395 1.9e-53 213.4 169 68.0
PGSC0003DMG400023532 Solanum tuberosum HOM05D005580 ORTHO05D006395 1.9e-53 213.4 165 69.1
FAN06G0736 Fragaria x ananassa HOM05D005580 ORTHO05D006395 2.5e-53 213.0 202 60.9
FAN06G1328 Fragaria x ananassa HOM05D005580 ORTHO05D006395 2.5e-53 213.0 202 60.9
TWI38G1118 Tripterygium wilfordii HOM05D005580 ORTHO05D006395 2.5e-53 213.0 167 67.7
Dinv26015 Davidia involucrata HOM05D005580 ORTHO05D006395 3.3e-53 212.6 174 66.7
Nitab4.5_0001097g0030 Nicotiana tabacum HOM05D005580 ORTHO05D006395 3.3e-53 212.6 164 69.5
GSVIVG01016552001 Vitis vinifera HOM05D005580 ORTHO05D006395 3.3e-53 212.6 178 64.6
CANSAT56G4483 Cannabis sativa HOM05D005580 ORTHO05D006395 4.3e-53 212.2 170 67.1
Duzib128G0371 Durio zibethinus HOM05D005580 ORTHO05D006395 4.3e-53 212.2 169 67.5
FAN10G2347 Fragaria x ananassa HOM05D005580 ORTHO05D006395 4.3e-53 212.2 202 60.4
Atru.chr12.452 Acer truncatum HOM05D005580 ORTHO05D006395 5.7e-53 211.8 175 66.3
Atru.chr12.474 Acer truncatum HOM05D005580 ORTHO05D006395 5.7e-53 211.8 175 66.3
CiPaw.01G287400 Carya illinoinensis HOM05D005580 ORTHO05D006395 5.7e-53 211.8 189 62.4
Gohir.A13G019300 Gossypium hirsutum HOM05D005580 ORTHO05D006395 5.7e-53 211.8 169 68.6
Lalb_Chr17g0336141 Lupinus albus HOM05D005580 ORTHO05D006395 5.7e-53 211.8 176 65.3
Solyc05g054450.1 Solanum lycopersicum HOM05D005580 ORTHO05D006395 5.7e-53 211.8 167 70.1
FvH4_7g22470 Fragaria vesca HOM05D005580 ORTHO05D006395 7.4e-53 211.5 202 60.4
FAN03G1496 Fragaria x ananassa HOM05D005580 ORTHO05D006395 7.4e-53 211.5 202 60.4
Gorai.013G022300 Gossypium raimondii HOM05D005580 ORTHO05D006395 7.4e-53 211.5 169 68.0
Duzib106G1822 Durio zibethinus HOM05D005580 ORTHO05D006395 9.7e-53 211.1 166 67.5
Lsat_1_v5_gn_2_119121 Lactuca sativa HOM05D005580 ORTHO05D006395 9.7e-53 211.1 187 66.8
ECA238G1104 Erigeron canadensis HOM05D005580 ORTHO05D006395 1.6e-52 210.3 160 67.5
Manes.10G030300 Manihot esculenta HOM05D005580 ORTHO05D006395 1.6e-52 210.3 172 65.1
TAR623G0785 Trochodendron aralioides HOM05D005580 ORTHO05D006395 1.6e-52 210.3 197 58.4
Gohir.D13G019900 Gossypium hirsutum HOM05D005580 ORTHO05D006395 2.8e-52 209.5 169 68.0
MBI05_g22035_MAGBIO Magnolia biondii HOM05D005580 ORTHO05D006395 3.7e-52 209.1 167 65.9
QL08p059794 Quercus lobata HOM05D005580 ORTHO05D006395 3.7e-52 209.1 198 59.6
CSS0041204 Camellia sinensis var. sinensis HOM05D005580 ORTHO05D006395 4.8e-52 208.8 175 65.1
Medtr7g026320 Medicago truncatula HOM05D005580 ORTHO05D006395 4.8e-52 208.8 176 63.1
Ca_26455_v3 Cicer arietinum L. HOM05D005580 ORTHO05D006395 8.2e-52 208.0 178 63.5
MSTRG.8252 Avicennia marina HOM05D005580 ORTHO05D006395 1.1e-51 207.6 163 68.7
DCAR_027619 Daucus carota HOM05D005580 ORTHO05D006395 1.1e-51 207.6 167 65.3
RcHm_v2.0_Chr1g0367081 Rosa chinensis HOM05D005580 ORTHO05D006395 1.1e-51 207.6 202 59.4
TPR.G23775 Trifolium pratense HOM05D005580 ORTHO05D006395 1.1e-51 207.6 169 63.9
Cc02_g07860 Coffea canephora HOM05D005580 ORTHO05D006395 2.4e-51 206.5 199 61.3
HanXRQChr02g0037481 Helianthus annuus HOM05D005580 ORTHO05D006395 3.1e-51 206.1 158 68.4
Nn2g11101 Nelumbo nucifera HOM05D005580 ORTHO05D006395 5.3e-51 205.3 174 62.6
TWI63G0967 Tripterygium wilfordii HOM05D005580 ORTHO05D006395 5.3e-51 205.3 190 61.6
DCAR_011695 Daucus carota HOM05D005580 ORTHO05D006395 9.0e-51 204.5 162 68.5
Lj8C84T10 Lonicera japonica HOM05D005580 ORTHO05D006395 1.5e-50 203.8 201 57.2
Sed0012553 Sechium edule HOM05D005580 ORTHO05D006395 1.5e-50 203.8 160 66.2
Nn2g13341 Nelumbo nucifera HOM05D005580 ORTHO05D006395 2.0e-50 203.4 196 62.2
CsaV3_5G008020 Cucumis sativus L. HOM05D005580 ORTHO05D006395 3.4e-50 202.6 164 64.0
TAR633G1881 Trochodendron aralioides HOM05D005580 ORTHO05D006395 3.4e-50 202.6 169 62.1
ClCG07G003270 Citrullus lanatus HOM05D005580 ORTHO05D006395 4.5e-50 202.2 176 62.5
Os05g0459300 Oryza sativa ssp. japonica HOM05D005580 ORTHO05D006395 4.5e-50 202.2 159 67.3
Lalb_Chr10g0091641 Lupinus albus HOM05D005580 ORTHO05D006395 7.7e-50 201.4 169 63.9
MELO3C023848.2 Cucumis melo HOM05D005580 ORTHO05D006395 1.7e-49 200.3 172 61.6
PGR142G3643 Punica granatum HOM05D005580 ORTHO05D006395 2.9e-49 199.5 173 61.3
Sc10g0001550 Simmondsia chinensis HOM05D005580 ORTHO05D006395 1.9e-48 196.8 160 65.0
HPP92_019446 Vanilla planifolia HOM05D005580 ORTHO05D006395 5.5e-48 195.3 187 56.7
PSO151G0057 Papaver somniferum HOM05D005580 ORTHO05D006395 9.4e-48 194.5 178 62.4
PSO339G6083 Papaver somniferum HOM05D005580 ORTHO05D006395 9.4e-48 194.5 178 62.4
AUR62012083 Chenopodium quinoa HOM05D005580 ORTHO05D006395 1.2e-47 194.1 164 60.4
PSO339G4490 Papaver somniferum HOM05D005580 ORTHO05D006395 2.7e-47 193.0 180 63.3
PSO384G2205 Papaver somniferum HOM05D005580 ORTHO05D006395 6.1e-47 191.8 180 62.8
Ah.16g102300 Amaranthus hybridus HOM05D005580 ORTHO05D006395 4.3e-45 185.7 164 58.5
ATR0559G355 Amborella trichopoda HOM05D005580 ORTHO05D006395 1.7e-44 183.7 160 58.8
SEGI_33908 Sequoiadendron giganteum HOM05D005580 ORTHO05D006395 6.3e-44 181.8 164 58.5
CDE02G1824 Ceratophyllum demersum HOM05D005580 ORTHO05D006395 1.1e-43 181.0 165 60.6
Os12g0571300 Oryza sativa ssp. japonica HOM05D005580 ORTHO05D006395 7.9e-39 164.9 166 53.0
Lj1P937T48 Lonicera japonica HOM05D005580 ORTHO05D006395 1.7e-36 157.1 108 72.2
AUR62039380 Chenopodium quinoa HOM05D000020 ORTHO05D001617 3.1e-35 152.9 143 56.6
Aqoxy4G02929 Aquilegia oxysepala HOM05D005580 ORTHO05D006395 2.9e-33 146.4 125 64.8
CDE08G0377 Ceratophyllum demersum HOM05D005580 ORTHO05D006395 5.0e-33 145.6 140 60.0
Dinv03047 Davidia involucrata HOM05D005580 ORTHO05D006395 1.0e-30 137.9 129 62.0
Actinidia02948 Actinidia chinensis HOM05D005580 ORTHO05D006395 2.3e-30 136.7 177 52.0
Cc05_g01760 Coffea canephora HOM05D005580 ORTHO05D006395 7.5e-29 131.7 200 46.0
Ciclev10032947m.g Citrus clementina HOM05D005580 ORTHO05D006395 9.1e-27 124.8 87 71.3
SGA_v2.0_scaffold2G01004 Striga asiatica HOM05D005580 ORTHO05D006395 1.8e-22 110.5 86 62.8
SGA_v2.0_scaffold221G42666 Striga asiatica HOM05D005580 ORTHO05D006395 6.3e-20 102.1 77 63.6
Oeu048246.1 Olea europaea HOM05D005580 ORTHO05D006395 1.6e-18 97.4 61 73.8
Migut.F01495 Erythranthe guttata HOM05D005580 ORTHO05D006395 1.3e-17 94.4 61 73.8
SEGI_21732 Sequoiadendron giganteum HOM05D003049 ORTHO05D003531 8.8e-14 81.6 90 56.7


User provided reference genes

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