Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g08388 Brassica carinata HOM05D007292 ORTHO05D009084 5.6e-40 167.2 85 100.0
BcaC02g09799 Brassica carinata HOM05D007292 ORTHO05D009084 2.0e-37 158.7 85 95.3
C04p36460 Brassica napus HOM05D007292 ORTHO05D009084 2.0e-37 158.7 85 95.3
BolC4t25149H Brassica oleracea HOM05D007292 ORTHO05D009084 2.0e-37 158.7 85 95.3
BraA04t16126Z Brassica rapa HOM05D007292 ORTHO05D009084 2.0e-37 158.7 85 95.3
Thhalv10006239m.g Eutrema salsugineum HOM05D007292 ORTHO05D009084 4.5e-37 157.5 85 94.1
BcaB01g00041 Brassica carinata HOM05D007292 ORTHO05D009084 1.3e-36 156.0 85 92.9
A09p48960 Brassica napus HOM05D007292 ORTHO05D009084 1.3e-36 156.0 85 92.9
C08p31330 Brassica napus HOM05D007292 ORTHO05D009084 1.3e-36 156.0 85 92.9
BolC8t50754H Brassica oleracea HOM05D007292 ORTHO05D009084 1.3e-36 156.0 85 92.9
BraA09t40351Z Brassica rapa HOM05D007292 ORTHO05D009084 1.3e-36 156.0 85 92.9
Sp5g06520 Schrenkiella parvula HOM05D007292 ORTHO05D009084 1.3e-36 156.0 85 92.9
A04p04080 Brassica napus HOM05D007292 ORTHO05D009084 8.4e-36 153.3 85 92.9
CARHR166090 Cardamine hirsuta HOM05D007292 ORTHO05D009084 6.0e-34 147.1 83 86.7
AL5G37290 Arabidopsis lyrata HOM05D007292 ORTHO05D009084 3.0e-33 144.8 83 85.5
AT3G56010 Arabidopsis thaliana HOM05D007292 ORTHO05D009084 3.0e-33 144.8 83 85.5
Carub.0005s2275 Capsella rubella HOM05D007292 ORTHO05D009084 6.7e-33 143.7 83 84.3
Aa31LG10G10950 Aethionema arabicum HOM05D007292 ORTHO05D009084 8.7e-33 143.3 83 85.5
DCAR_011829 Daucus carota HOM05D007292 ORTHO05D009084 1.1e-27 126.3 85 72.9
Hma1.2p1_0145F.1_g065370 Hydrangea macrophylla HOM05D007292 ORTHO05D009084 5.5e-27 124.0 82 73.2
Hma1.2p1_2705F.1_g327175 Hydrangea macrophylla HOM05D007292 ORTHO05D009084 5.5e-27 124.0 82 73.2
Eucgr.J00191 Eucalyptus grandis HOM05D007292 ORTHO05D009084 1.6e-26 122.5 83 72.3
THA.LOC104824327 Tarenaya hassleriana HOM05D007292 ORTHO05D009084 2.7e-26 121.7 83 72.3
Dinv10605 Davidia involucrata HOM05D007292 ORTHO05D009084 3.5e-26 121.3 83 69.9
Lalb_Chr08g0231651 Lupinus albus HOM05D007292 ORTHO05D009084 6.0e-26 120.6 83 71.1
TAR633G2478 Trochodendron aralioides HOM05D007292 ORTHO05D009084 1.0e-25 119.8 85 68.2
Manes.07G131600 Manihot esculenta HOM05D007292 ORTHO05D009084 1.8e-25 119.0 83 71.1
SalBow5G0252 Salvia bowleyana HOM05D007292 ORTHO05D009084 1.8e-25 119.0 83 71.1
SalBow5G4600 Salvia bowleyana HOM05D007292 ORTHO05D009084 1.8e-25 119.0 83 71.1
Haze_17244 Corylus avellana HOM05D004762 ORTHO05D005972 2.3e-25 118.6 83 69.9
Lj6g0005846 Lotus japonicus HOM05D007292 ORTHO05D009084 2.3e-25 118.6 83 69.9
TWI53G0916 Tripterygium wilfordii HOM05D007292 ORTHO05D009084 3.0e-25 118.2 83 69.9
Psat5g129440 Pisum sativum HOM05D007292 ORTHO05D009084 3.9e-25 117.9 86 67.4
Prupe.2G252500 Prunus persica HOM05D007292 ORTHO05D009084 3.9e-25 117.9 84 69.0
Ah.16g103670 Amaranthus hybridus HOM05D007292 ORTHO05D009084 5.1e-25 117.5 83 68.7
Cfa001300 Carpinus fangiana HOM05D007292 ORTHO05D009084 8.7e-25 116.7 83 68.7
MD07G1224000 Malus domestica HOM05D007292 ORTHO05D009084 8.7e-25 116.7 84 69.0
TWI09G0172 Tripterygium wilfordii HOM05D007292 ORTHO05D009084 8.7e-25 116.7 83 69.9
GSVIVG01032790001 Vitis vinifera HOM05D007292 ORTHO05D009084 1.5e-24 115.9 83 67.5
Hund13879 Selenicereus undatus HOM05D007292 ORTHO05D009084 1.9e-24 115.5 83 66.3
Actinidia00958 Actinidia chinensis HOM05D007292 ORTHO05D009084 2.5e-24 115.2 83 66.3
Actinidia13950 Actinidia chinensis HOM05D007292 ORTHO05D009084 2.5e-24 115.2 83 66.3
EL10Ac2g04856 Beta vulgaris HOM05D007292 ORTHO05D009084 2.5e-24 115.2 83 67.5
CiPaw.01G300300 Carya illinoinensis HOM05D007292 ORTHO05D009084 2.5e-24 115.2 83 67.5
PGR044G1044 Punica granatum HOM05D007292 ORTHO05D009084 2.5e-24 115.2 83 66.3
Nitab4.5_0002701g0020 Nicotiana tabacum HOM05D007292 ORTHO05D009084 3.3e-24 114.8 83 63.9
Solyc03g095990.1 Solanum lycopersicum HOM05D007292 ORTHO05D009084 3.3e-24 114.8 83 66.3
Sopen03g026090 Solanum pennellii HOM05D007292 ORTHO05D009084 3.3e-24 114.8 83 66.3
PGSC0003DMG400027726 Solanum tuberosum HOM05D007292 ORTHO05D009084 3.3e-24 114.8 83 66.3
arahy.Tifrunner.gnm1.ann1.W7USAB Arachis hypogaea HOM05D007292 ORTHO05D009084 4.3e-24 114.4 83 68.7
MD01G1154900 Malus domestica HOM05D007292 ORTHO05D009084 5.6e-24 114.0 84 66.7
Nitab4.5_0000487g0050 Nicotiana tabacum HOM05D007292 ORTHO05D009084 5.6e-24 114.0 83 63.9
Sed0024586 Sechium edule HOM05D007292 ORTHO05D009084 5.6e-24 114.0 85 69.4
Thecc.10G013900 Theobroma cacao HOM05D007292 ORTHO05D009084 5.6e-24 114.0 83 66.3
CANSAT56G1912 Cannabis sativa HOM05D007292 ORTHO05D009084 7.4e-24 113.6 83 67.5
Lsat_1_v5_gn_2_124081 Lactuca sativa HOM05D007292 ORTHO05D009084 7.4e-24 113.6 86 65.1
Medtr3g070960 Medicago truncatula HOM05D007292 ORTHO05D009084 9.6e-24 113.2 84 65.5
Cc08_g07220 Coffea canephora HOM05D007292 ORTHO05D009084 1.3e-23 112.8 83 66.3
QL08p063404 Quercus lobata HOM05D007292 ORTHO05D009084 1.3e-23 112.8 83 66.3
AUR62022909 Chenopodium quinoa HOM05D007292 ORTHO05D009084 1.6e-23 112.5 83 65.1
Ciclev10032544m.g Citrus clementina HOM05D007292 ORTHO05D009084 1.6e-23 112.5 83 67.5
THA.LOC104811239 Tarenaya hassleriana HOM05D007292 ORTHO05D009084 1.6e-23 112.5 83 66.3
vmacro10031 Vaccinium macrocarpon HOM05D007292 ORTHO05D009084 1.6e-23 112.5 85 65.9
ATR0681G254 Amborella trichopoda HOM05D007292 ORTHO05D009084 2.1e-23 112.1 83 65.1
arahy.Tifrunner.gnm1.ann1.RI3S0A Arachis hypogaea HOM05D007292 ORTHO05D009084 2.1e-23 112.1 83 67.5
CsaV3_5G010290 Cucumis sativus L. HOM05D007292 ORTHO05D009084 2.1e-23 112.1 83 66.3
Duzib114G0074 Durio zibethinus HOM05D007292 ORTHO05D009084 2.1e-23 112.1 83 65.1
Potri.010G186800 Populus trichocarpa HOM05D007292 ORTHO05D009084 2.1e-23 112.1 83 62.7
MELO3C018364.2 Cucumis melo HOM05D007292 ORTHO05D009084 2.8e-23 111.7 83 65.1
Gohir.A05G330800 Gossypium hirsutum HOM05D007292 ORTHO05D009084 3.7e-23 111.3 83 66.3
Gorai.012G078000 Gossypium raimondii HOM05D007292 ORTHO05D009084 3.7e-23 111.3 83 66.3
Rhsim09G0178500 Rhododendron simsii HOM05D007292 ORTHO05D009084 4.8e-23 110.9 83 66.3
PSO384G0417 Papaver somniferum HOM05D007292 ORTHO05D009084 6.2e-23 110.5 84 63.1
Cpa.g.sc19.157 Carica papaya HOM05D007292 ORTHO05D009084 8.2e-23 110.2 83 63.9
Aqoxy6G01833 Aquilegia oxysepala HOM05D007292 ORTHO05D009084 1.4e-22 109.4 84 64.3
Gohir.D04G069400 Gossypium hirsutum HOM05D007292 ORTHO05D009084 1.4e-22 109.4 83 65.1
TPR.G11203 Trifolium pratense HOM05D007292 ORTHO05D009084 1.4e-22 109.4 86 62.8
Atru.chr12.94 Acer truncatum HOM05D007292 ORTHO05D009084 3.1e-22 108.2 83 66.3
FAN10G1098 Fragaria x ananassa HOM05D007292 ORTHO05D009084 4.0e-22 107.8 81 66.7
FvH4_7g24710 Fragaria vesca HOM05D007292 ORTHO05D009084 5.3e-22 107.5 81 66.7
FAN01G0766 Fragaria x ananassa HOM05D007292 ORTHO05D009084 5.3e-22 107.5 81 66.7
FAN03G0495 Fragaria x ananassa HOM05D004762 ORTHO05D005972 5.3e-22 107.5 81 66.7
FAN06G1000 Fragaria x ananassa HOM05D007292 ORTHO05D009084 5.3e-22 107.5 81 66.7
Peaxi162Scf00484g00003 Petunia axillaris HOM05D007292 ORTHO05D009084 5.3e-22 107.5 83 60.2
RcHm_v2.0_Chr1g0370551 Rosa chinensis HOM05D007292 ORTHO05D009084 5.3e-22 107.5 81 66.7
HanXRQChr14g0459531 Helianthus annuus HOM05D007292 ORTHO05D009084 9.0e-22 106.7 84 61.9
Potri.008G070700 Populus trichocarpa HOM05D007292 ORTHO05D009084 1.2e-21 106.3 83 60.2
Sabra08G0052000 Salix brachista HOM05D007292 ORTHO05D009084 1.5e-21 105.9 83 60.2
Sc10g0002470 Simmondsia chinensis HOM05D007292 ORTHO05D009084 1.5e-21 105.9 83 60.2
Migut.F01485 Erythranthe guttata HOM05D007292 ORTHO05D009084 2.0e-21 105.5 83 60.2
Glyma.11G231200 Glycine max HOM05D007292 ORTHO05D009084 2.0e-21 105.5 84 64.3
CSS0010989 Camellia sinensis var. sinensis HOM05D007292 ORTHO05D009084 4.5e-21 104.4 85 63.5
Glyma.18G025900 Glycine max HOM05D007292 ORTHO05D009084 4.5e-21 104.4 84 63.1
ECA238G0254 Erigeron canadensis HOM05D007292 ORTHO05D009084 1.7e-20 102.4 84 60.7
VMungo1383G3483 Vigna mungo HOM05D001399 ORTHO05D001670 3.8e-20 101.3 83 61.4
Hma1.2p1_2705F.1_g327170 Hydrangea macrophylla HOM05D001399 ORTHO05D001670 6.5e-20 100.5 71 70.4
Ca_15135_v3 Cicer arietinum L. HOM05D007292 ORTHO05D009084 8.4e-20 100.1 63 71.4
Phvul.001G244400 Phaseolus vulgaris HOM05D007292 ORTHO05D009084 8.4e-20 100.1 83 60.2
ClCG07G004350 Citrullus lanatus HOM05D007292 ORTHO05D009084 1.6e-18 95.9 75 62.7
Os03g0293100 Oryza sativa ssp. japonica HOM05D007292 ORTHO05D009084 3.5e-18 94.7 85 57.6
Zm00001eb013500 Zea mays HOM05D007292 ORTHO05D009084 3.0e-17 91.7 90 52.2
TAR636G1797 Trochodendron aralioides HOM05D007292 ORTHO05D009084 4.3e-16 87.8 82 57.3
SEGI_20884 Sequoiadendron giganteum HOM05D007292 ORTHO05D009084 2.1e-10 68.9 83 43.4
SGA_v2.0_scaffold378G50330 Striga asiatica HOM05D007292 ORTHO05D009084 2.5e-08 62.0 55 56.4
COL.COLO4_25767 Corchorus olitorius HOM05D004762 ORTHO05D005972 3.3e-08 61.6 48 62.5
Sabra10G0144000 Salix brachista HOM05D007292 ORTHO05D009084 4.3e-08 61.2 48 60.4
CDE04G1468 Ceratophyllum demersum HOM05D000652 ORTHO05D009084 7.4e-08 60.5 48 60.4
Nn2g13181 Nelumbo nucifera HOM05D007292 ORTHO05D009084 1.3e-07 59.7 62 46.8


User provided reference genes

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