Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g08372 Brassica carinata HOM05D004173 ORTHO05D004885 1.8e-125 452.6 228 100.0
BraA04t16106Z Brassica rapa HOM05D004173 ORTHO05D004885 7.1e-114 414.1 228 93.0
A04p03290 Brassica napus HOM05D004173 ORTHO05D004885 1.6e-113 412.9 228 92.5
BolC4t25192H Brassica oleracea HOM05D004173 ORTHO05D004885 6.9e-109 397.5 228 90.8
BcaC02g09832 Brassica carinata HOM05D004173 ORTHO05D004885 2.6e-108 395.6 228 90.8
C04p36060 Brassica napus HOM05D004173 ORTHO05D004885 2.6e-108 395.6 228 90.8
Sp5g06150 Schrenkiella parvula HOM05D004173 ORTHO05D004885 6.0e-89 331.3 241 76.8
Thhalv10006215m.g Eutrema salsugineum HOM05D004173 ORTHO05D004885 5.7e-87 324.7 235 74.9
CARHR166510 Cardamine hirsuta HOM05D004173 ORTHO05D004885 1.3e-86 323.6 245 75.1
AL5G37690 Arabidopsis lyrata HOM05D004173 ORTHO05D004885 1.1e-85 320.5 237 74.7
BcaC07g39950 Brassica carinata HOM05D004173 ORTHO05D004885 2.0e-84 316.2 228 74.6
A09p49310 Brassica napus HOM05D004173 ORTHO05D004885 3.4e-84 315.5 231 75.3
BraA09t40385Z Brassica rapa HOM05D004173 ORTHO05D004885 3.4e-84 315.5 231 75.3
AT3G56360 Arabidopsis thaliana HOM05D004173 ORTHO05D004885 4.5e-84 315.1 237 73.4
Carub.0005s2314 Capsella rubella HOM05D004173 ORTHO05D004885 4.6e-81 305.1 245 70.6
BolC8t50789H Brassica oleracea HOM05D004173 ORTHO05D004885 7.9e-81 304.3 233 75.5
BcaC07g39948 Brassica carinata HOM05D004173 ORTHO05D004885 1.3e-80 303.5 225 76.0
C08p31680 Brassica napus HOM05D004173 ORTHO05D004885 1.3e-80 303.5 225 76.0
Aa31LG10G11250 Aethionema arabicum HOM05D004173 ORTHO05D004885 1.3e-70 270.4 250 62.8
THA.LOC104824365 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 4.1e-69 265.4 248 62.9
THA.LOC104803208 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 3.2e-66 255.8 241 61.4
THA.LOC104813511 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 3.7e-62 242.3 249 59.4
Psat5g068840 Pisum sativum HOM05D004173 ORTHO05D004885 6.8e-40 168.3 210 47.1
Ca_16866_v3 Cicer arietinum L. HOM05D004173 ORTHO05D004885 8.3e-38 161.4 245 42.4
Ca_29953_v3 Cicer arietinum L. HOM05D004173 ORTHO05D004885 8.3e-38 161.4 245 42.4
A10p30940 Brassica napus HOM05D004173 ORTHO05D004885 1.4e-37 160.6 208 45.7
BraA10t45139Z Brassica rapa HOM05D004173 ORTHO05D004885 1.4e-37 160.6 208 45.7
Eucgr.J00114 Eucalyptus grandis HOM05D004173 ORTHO05D004885 5.4e-37 158.7 245 42.0
Potri.019G058000 Populus trichocarpa HOM05D004173 ORTHO05D004885 7.0e-37 158.3 196 48.0
Cpa.g.sc19.59 Carica papaya HOM05D004173 ORTHO05D004885 9.1e-37 157.9 251 42.2
RcHm_v2.0_Chr1g0372231 Rosa chinensis HOM05D004173 ORTHO05D004885 9.1e-37 157.9 217 47.0
vmacro09960 Vaccinium macrocarpon HOM05D004173 ORTHO05D004885 9.1e-37 157.9 202 44.6
Ciclev10032642m.g Citrus clementina HOM05D004173 ORTHO05D004885 1.2e-36 157.5 201 44.8
Actinidia00999 Actinidia chinensis HOM05D004173 ORTHO05D004885 2.7e-36 156.4 178 46.6
Thhalv10014558m.g Eutrema salsugineum HOM05D004173 ORTHO05D004885 4.5e-36 155.6 213 45.1
Rhsim09G0185800 Rhododendron simsii HOM05D004173 ORTHO05D004885 5.9e-36 155.2 197 44.7
Sp6g37580 Schrenkiella parvula HOM05D004173 ORTHO05D004885 7.7e-36 154.8 214 44.9
Aa31LG11G6110 Aethionema arabicum HOM05D004173 ORTHO05D004885 1.0e-35 154.5 219 43.4
arahy.Tifrunner.gnm1.ann1.7F477P Arachis hypogaea HOM05D004173 ORTHO05D004885 1.0e-35 154.5 250 39.6
Carub.0006s0418 Capsella rubella HOM05D004173 ORTHO05D004885 1.0e-35 154.5 213 44.6
C09p71450 Brassica napus HOM05D004173 ORTHO05D004885 1.3e-35 154.1 212 45.3
BolC9t59908H Brassica oleracea HOM05D004173 ORTHO05D004885 1.3e-35 154.1 212 45.3
AL6G15090 Arabidopsis lyrata HOM05D004173 ORTHO05D004885 2.9e-35 152.9 211 44.5
Dinv34482 Davidia involucrata HOM05D004173 ORTHO05D004885 2.9e-35 152.9 158 50.0
Lj1g0005357 Lotus japonicus HOM05D004173 ORTHO05D004885 3.8e-35 152.5 209 44.0
AT5G05250 Arabidopsis thaliana HOM05D004173 ORTHO05D004885 5.0e-35 152.1 219 43.8
Manes.07G143600 Manihot esculenta HOM05D004173 ORTHO05D004885 1.5e-34 150.6 200 46.0
Glyma.06G142900 Glycine max HOM05D004173 ORTHO05D004885 1.9e-34 150.2 168 50.6
Lalb_Chr23g0272221 Lupinus albus HOM05D004173 ORTHO05D004885 2.5e-34 149.8 241 41.5
Phvul.009G044100 Phaseolus vulgaris HOM05D004173 ORTHO05D004885 2.5e-34 149.8 185 47.6
Medtr3g093970 Medicago truncatula HOM05D004173 ORTHO05D004885 3.3e-34 149.4 227 42.7
Thecc.10G181100 Theobroma cacao HOM05D004173 ORTHO05D004885 3.3e-34 149.4 171 46.8
FAN03G3439 Fragaria x ananassa HOM05D004173 ORTHO05D004885 4.2e-34 149.1 209 44.5
TPR.G1732 Trifolium pratense HOM05D004173 ORTHO05D004885 4.2e-34 149.1 182 47.8
CARHR207980 Cardamine hirsuta HOM05D004173 ORTHO05D004885 5.5e-34 148.7 160 50.0
Cfa001210 Carpinus fangiana HOM05D004173 ORTHO05D004885 9.5e-34 147.9 214 45.8
AUR62024933 Chenopodium quinoa HOM05D004173 ORTHO05D004885 1.6e-33 147.1 164 48.8
Duzib114G0418 Durio zibethinus HOM05D004173 ORTHO05D004885 1.6e-33 147.1 183 44.8
Glyma.04G222500 Glycine max HOM05D004173 ORTHO05D004885 1.6e-33 147.1 219 43.8
MD01G1167600 Malus domestica HOM05D004173 ORTHO05D004885 1.6e-33 147.1 192 43.8
FAN10G3668 Fragaria x ananassa HOM05D004173 ORTHO05D004885 2.1e-33 146.7 207 43.0
THA.LOC104826832 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 2.1e-33 146.7 213 42.3
MD07G1233600 Malus domestica HOM05D004173 ORTHO05D004885 2.8e-33 146.4 251 38.6
VMungo1309G0457 Vigna mungo HOM05D004173 ORTHO05D004885 4.7e-33 145.6 219 43.4
Manes.10G001300 Manihot esculenta HOM05D004173 ORTHO05D004885 1.0e-32 144.4 205 42.4
FvH4_7g25910 Fragaria vesca HOM05D004173 ORTHO05D004885 1.4e-32 144.1 222 41.0
FAN06G1323 Fragaria x ananassa HOM05D004173 ORTHO05D004885 1.4e-32 144.1 222 41.0
Lalb_Chr23g0272201 Lupinus albus HOM05D004173 ORTHO05D004885 1.8e-32 143.7 220 40.5
Manes.07G141000 Manihot esculenta HOM05D004173 ORTHO05D004885 1.8e-32 143.7 200 45.0
Prupe.2G264000 Prunus persica HOM05D004173 ORTHO05D004885 1.8e-32 143.7 234 38.9
CSS0045557 Camellia sinensis var. sinensis HOM05D004173 ORTHO05D004885 2.3e-32 143.3 202 41.6
MELO3C020007.2 Cucumis melo HOM05D004173 ORTHO05D004885 2.3e-32 143.3 233 41.6
QL08p064831 Quercus lobata HOM05D004173 ORTHO05D004885 2.3e-32 143.3 207 42.0
Ah.12g064380 Amaranthus hybridus HOM05D004173 ORTHO05D004885 4.0e-32 142.5 157 50.3
Atru.chr12.182 Acer truncatum HOM05D004173 ORTHO05D004885 8.9e-32 141.4 246 39.4
Nitab4.5_0002279g0040 Nicotiana tabacum HOM05D004173 ORTHO05D004885 1.2e-31 141.0 175 41.1
Sc10g0002990 Simmondsia chinensis HOM05D004173 ORTHO05D004885 1.2e-31 141.0 165 50.3
Duzib128G1795 Durio zibethinus HOM05D004173 ORTHO05D004885 1.5e-31 140.6 236 36.4
Hma1.2p1_0264F.1_g106180 Hydrangea macrophylla HOM05D004173 ORTHO05D004885 2.0e-31 140.2 170 47.6
CsaV3_6G002310 Cucumis sativus L. HOM05D004173 ORTHO05D004885 2.6e-31 139.8 232 41.8
Peaxi162Scf00739g00035 Petunia axillaris HOM05D004173 ORTHO05D004885 5.7e-31 138.7 181 38.1
CAN.G24.14 Capsicum annuum HOM05D004173 ORTHO05D004885 7.5e-31 138.3 171 40.9
Gohir.D05G280200 Gossypium hirsutum HOM05D004173 ORTHO05D004885 7.5e-31 138.3 166 47.0
Gohir.A05G278500 Gossypium hirsutum HOM05D004173 ORTHO05D004885 1.3e-30 137.5 166 46.4
Solyc06g049020.1 Solanum lycopersicum HOM05D004173 ORTHO05D004885 1.7e-30 137.1 204 38.7
Gorai.009G293700 Gossypium raimondii HOM05D004173 ORTHO05D004885 2.9e-30 136.3 166 46.4
Sed0028126 Sechium edule HOM05D004173 ORTHO05D004885 2.9e-30 136.3 169 44.4
Sopen06g015380 Solanum pennellii HOM05D004173 ORTHO05D004885 3.7e-30 136.0 204 38.2
TWI73G0681 Tripterygium wilfordii HOM05D004173 ORTHO05D004885 4.9e-30 135.6 242 40.5
BcaC06g32235 Brassica carinata HOM05D004173 ORTHO05D004885 8.3e-30 134.8 209 42.6
CANSAT25G2618 Cannabis sativa HOM05D004173 ORTHO05D004885 1.1e-29 134.4 162 45.7
Peaxi162Scf00739g00036 Petunia axillaris HOM05D004173 ORTHO05D004885 1.1e-29 134.4 180 38.3
PGSC0003DMG400016638 Solanum tuberosum HOM05D004173 ORTHO05D004885 4.1e-29 132.5 173 41.0
Migut.F00606 Erythranthe guttata HOM05D004173 ORTHO05D004885 9.2e-29 131.3 158 40.5
CAN.G100.76 Capsicum annuum HOM05D004173 ORTHO05D004885 1.2e-28 131.0 172 40.1
Nitab4.5_0000171g0010 Nicotiana tabacum HOM05D004173 ORTHO05D004885 1.2e-28 131.0 174 37.4
CiPaw.01G306500 Carya illinoinensis HOM05D004173 ORTHO05D004885 1.6e-28 130.6 150 46.7
Haze_17356 Corylus avellana HOM05D004173 ORTHO05D004885 4.6e-28 129.0 209 39.7
PGR044G2104 Punica granatum HOM05D004173 ORTHO05D004885 5.9e-28 128.6 243 37.9
SalBow3G3840 Salvia bowleyana HOM05D004173 ORTHO05D004885 5.9e-28 128.6 155 43.2
AUR62030611 Chenopodium quinoa HOM05D004173 ORTHO05D004885 2.3e-27 126.7 159 43.4
Oeu063983.1 Olea europaea HOM05D004173 ORTHO05D004885 6.6e-27 125.2 209 32.1
Gohir.D13G006700 Gossypium hirsutum HOM05D004173 ORTHO05D004885 1.9e-26 123.6 240 37.5
Gorai.013G006900 Gossypium raimondii HOM05D004173 ORTHO05D004885 1.9e-26 123.6 240 36.2
DCAR_014665 Daucus carota HOM05D004173 ORTHO05D004885 2.5e-26 123.2 205 37.1
Gohir.A13G006500 Gossypium hirsutum HOM05D004173 ORTHO05D004885 3.3e-26 122.9 238 36.1
Peaxi162Scf00167g01213 Petunia axillaris HOM05D004173 ORTHO05D004885 5.6e-26 122.1 152 42.8
SGA_v2.0_scaffold60G20889 Striga asiatica HOM05D004173 ORTHO05D004885 2.8e-25 119.8 179 36.3
TAR365G0355 Trochodendron aralioides HOM05D004173 ORTHO05D004885 2.8e-25 119.8 166 44.0
TAR365G1150 Trochodendron aralioides HOM05D004173 ORTHO05D004885 4.7e-25 119.0 164 43.3
Zm00001eb056440 Zea mays HOM05D004173 ORTHO05D004885 8.0e-25 118.2 157 40.8
PGSC0003DMG400011642 Solanum tuberosum HOM05D004173 ORTHO05D004885 1.4e-24 117.5 178 37.1
PSO421G0661 Papaver somniferum HOM05D004173 ORTHO05D004885 2.3e-24 116.7 188 38.8
MBI18_g38876_MAGBIO Magnolia biondii HOM05D004173 ORTHO05D004885 5.2e-24 115.5 221 36.2
CAN.G203.54 Capsicum annuum HOM05D004173 ORTHO05D004885 1.2e-23 114.4 189 33.9
Nn5g26849 Nelumbo nucifera HOM05D004173 ORTHO05D004885 2.0e-23 113.6 164 42.7
PSO104G0082 Papaver somniferum HOM05D004173 ORTHO05D004885 2.6e-23 113.2 236 34.7
Nn2g10306 Nelumbo nucifera HOM05D004173 ORTHO05D004885 3.4e-23 112.8 175 39.4
PSO266G0063 Papaver somniferum HOM05D004173 ORTHO05D004885 5.8e-23 112.1 176 37.5
PSO675G3687 Papaver somniferum HOM05D004173 ORTHO05D004885 7.5e-23 111.7 186 39.2
PSO063G2850 Papaver somniferum HOM05D004173 ORTHO05D004885 1.7e-22 110.5 191 38.7
PSO478G3294 Papaver somniferum HOM05D004173 ORTHO05D004885 3.7e-22 109.4 176 36.9
Lsat_1_v5_gn_8_11461 Lactuca sativa HOM05D004173 ORTHO05D004885 4.9e-22 109.0 159 41.5
Zm00001eb215400 Zea mays HOM05D004173 ORTHO05D004885 4.9e-22 109.0 159 39.6
Aqoxy5G02899 Aquilegia oxysepala HOM05D004173 ORTHO05D004885 6.4e-22 108.6 176 40.9
Sopen05g030770 Solanum pennellii HOM05D004173 ORTHO05D004885 6.4e-22 108.6 179 36.9
Cc10_g16360 Coffea canephora HOM05D004173 ORTHO05D004885 1.1e-21 107.8 162 39.5
HanXRQChr08g0221561 Helianthus annuus HOM05D004173 ORTHO05D004885 1.1e-21 107.8 157 43.3
ClCG11G005670 Citrullus lanatus HOM05D004173 ORTHO05D004885 3.2e-21 106.3 213 36.6
Dinv21845 Davidia involucrata HOM05D004173 ORTHO05D004885 9.2e-21 104.8 156 41.7
MSTRG.18054 Avicennia marina HOM05D004173 ORTHO05D004885 1.2e-20 104.4 201 38.8
EL10Ac2g02643 Beta vulgaris HOM05D004173 ORTHO05D004885 2.7e-20 103.2 122 43.4
ATR0124G034 Amborella trichopoda HOM05D004173 ORTHO05D004885 3.5e-20 102.8 161 41.6
Os03g0736900 Oryza sativa ssp. japonica HOM05D004173 ORTHO05D004885 4.6e-20 102.4 154 36.4
Lsat_1_v5_gn_9_60020 Lactuca sativa HOM05D004173 ORTHO05D004885 1.0e-19 101.3 159 42.1
CSS0041127 Camellia sinensis var. sinensis HOM05D004173 ORTHO05D004885 1.7e-19 100.5 177 34.5
CSS0049649 Camellia sinensis var. sinensis HOM05D004173 ORTHO05D004885 1.7e-19 100.5 177 34.5
HanXRQChr09g0252211 Helianthus annuus HOM05D004173 ORTHO05D004885 3.9e-19 99.4 161 42.2
Gorai.012G014700 Gossypium raimondii HOM05D004173 ORTHO05D004885 5.0e-19 99.0 141 41.8
HPP92_012755 Vanilla planifolia HOM05D004173 ORTHO05D004885 6.6e-19 98.6 177 35.0
Oeu025786.2 Olea europaea HOM05D004173 ORTHO05D004885 3.3e-18 96.3 165 39.4
Gohir.A05G403100 Gossypium hirsutum HOM05D004173 ORTHO05D004885 4.3e-18 95.9 140 39.3
Gohir.D04G012400 Gossypium hirsutum HOM05D004173 ORTHO05D004885 7.3e-18 95.1 140 38.6
unitig_37.g11910 Utricularia gibba HOM05D004173 ORTHO05D004885 7.3e-18 95.1 156 32.7
ATR0776G079 Amborella trichopoda HOM05D004173 ORTHO05D004885 2.8e-17 93.2 163 39.3
Lsat_1_v5_gn_2_126200 Lactuca sativa HOM05D004173 ORTHO05D004885 8.1e-17 91.7 160 36.2
ECA238G3313 Erigeron canadensis HOM05D004173 ORTHO05D004885 4.0e-16 89.4 160 37.5
CDE02G3998 Ceratophyllum demersum HOM05D004173 ORTHO05D004885 4.9e-14 82.4 156 33.3
Nitab4.5_0000375g0240 Nicotiana tabacum HOM05D004173 ORTHO05D004885 1.9e-13 80.5 81 45.7
CDE04G1376 Ceratophyllum demersum HOM05D004173 ORTHO05D004885 3.2e-13 79.7 153 32.7
Actinidia07794 Actinidia chinensis HOM05D004173 ORTHO05D004885 9.2e-13 78.2 110 39.1
SEGI_03811 Sequoiadendron giganteum HOM05D004173 ORTHO05D004885 1.6e-12 77.4 172 34.9
SEGI_33270 Sequoiadendron giganteum HOM05D004173 ORTHO05D004885 4.6e-12 75.9 172 34.9
Sc05g0006880 Simmondsia chinensis HOM05D004173 ORTHO05D004885 7.8e-12 75.1 153 34.0
Nitab4.5_0002846g0010 Nicotiana tabacum HOM05D004173 ORTHO05D004885 1.3e-11 74.3 129 32.6
Phvul.009G044000 Phaseolus vulgaris HOM05D004173 ORTHO05D004885 1.1e-10 71.2 64 59.4
Pp3c2_14400 Physcomitrium patens HOM05D004173 ORTHO05D004885 1.5e-10 70.9 163 31.3
CBR_g24287 Chara braunii HOM05D004173 ORTHO05D004885 4.7e-09 65.9 112 36.6
Ah.14g087000 Amaranthus hybridus HOM05D004173 ORTHO05D004885 1.4e-08 64.3 199 27.6
Lalb_Chr11g0067791 Lupinus albus HOM05D004173 ORTHO05D004885 3.1e-08 63.2 75 45.3
Pp3c14_17300 Physcomitrium patens HOM05D004173 ORTHO05D004885 4.0e-08 62.8 167 28.7
Rhsim10G0215400 Rhododendron simsii HOM05D000820 ORTHO05D016785 5.8e-07 58.9 147 32.0
Dinv05055 Davidia involucrata HOM05D004173 ORTHO05D004885 9.9e-07 58.2 81 39.5


User provided reference genes

Program Settings