Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g08343 Brassica carinata HOM05D005060 ORTHO05D005975 1.6e-57 226.1 133 100.0
BcaC07g40003 Brassica carinata HOM05D005060 ORTHO05D005975 4.4e-47 191.4 144 82.6
C08p32160 Brassica napus HOM05D005060 ORTHO05D005975 4.4e-47 191.4 144 82.6
BolC8t50834H Brassica oleracea HOM05D005060 ORTHO05D005975 4.4e-47 191.4 144 82.6
A09p49780 Brassica napus HOM05D005060 ORTHO05D005975 1.3e-46 189.9 144 81.9
BraA09t40431Z Brassica rapa HOM05D005060 ORTHO05D005975 1.3e-46 189.9 144 81.9
BcaC02g09878 Brassica carinata HOM05D005060 ORTHO05D005975 3.8e-43 178.3 147 78.9
C04p35630 Brassica napus HOM05D005060 ORTHO05D005975 3.8e-43 178.3 147 78.9
BolC4t25241H Brassica oleracea HOM05D005060 ORTHO05D005975 3.8e-43 178.3 147 78.9
BcaC07g40108 Brassica carinata HOM05D005060 ORTHO05D005975 5.0e-43 177.9 146 78.1
Sp5g05680 Schrenkiella parvula HOM05D005060 ORTHO05D005975 1.1e-42 176.8 152 78.9
A04p03610 Brassica napus HOM05D005060 ORTHO05D005975 4.2e-42 174.9 144 77.1
AT3G56910 Arabidopsis thaliana HOM05D005060 ORTHO05D005975 1.1e-39 166.8 151 75.5
BolC6t37551H Brassica oleracea HOM05D005060 ORTHO05D005975 3.3e-39 165.2 144 73.6
C06p23830 Brassica napus HOM05D005060 ORTHO05D005975 4.4e-39 164.9 144 73.6
BraA07t29972Z Brassica rapa HOM05D000531 ORTHO05D001630 1.7e-38 162.9 148 74.3
A07p23120 Brassica napus HOM05D005060 ORTHO05D005975 3.7e-38 161.8 145 75.9
CARHR167060 Cardamine hirsuta HOM05D005060 ORTHO05D005975 4.1e-37 158.3 152 71.7
Thhalv10006294m.g Eutrema salsugineum HOM05D005060 ORTHO05D005975 9.1e-37 157.1 151 72.2
Carub.0005s2365 Capsella rubella HOM05D005060 ORTHO05D005975 6.5e-35 151.0 153 70.6
BcaC08g44810 Brassica carinata HOM05D005060 ORTHO05D005975 8.5e-35 150.6 142 64.8
AL5G38310 Arabidopsis lyrata HOM05D005060 ORTHO05D005975 1.1e-34 150.2 153 71.9
Aa31LG10G11770 Aethionema arabicum HOM05D005060 ORTHO05D005975 3.6e-17 92.0 153 56.9
BcaB03g14272 Brassica carinata HOM05D005060 ORTHO05D005975 6.8e-16 87.8 133 51.9
A07p12270 Brassica napus HOM05D006945 ORTHO05D005549 6.8e-16 87.8 85 64.7
A07p12290 Brassica napus HOM05D006945 ORTHO05D005549 6.8e-16 87.8 85 64.7
BraA07t29011Z Brassica rapa HOM05D006945 ORTHO05D005549 6.8e-16 87.8 85 64.7
Cpa.g.sc33.199 Carica papaya HOM05D005060 ORTHO05D005975 2.7e-12 75.9 148 48.0
Lalb_Chr14g0365381 Lupinus albus HOM05D005060 ORTHO05D005975 3.5e-12 75.5 161 45.3
Lalb_Chr22g0358011 Lupinus albus HOM05D005060 ORTHO05D005975 4.5e-12 75.1 159 46.5
Ca_08351_v3 Cicer arietinum L. HOM05D005060 ORTHO05D005975 7.8e-12 74.3 151 45.7
Lj1g0025022 Lotus japonicus HOM05D005060 ORTHO05D005975 7.8e-12 74.3 149 45.6
THA.LOC104803240 Tarenaya hassleriana HOM05D005060 ORTHO05D005975 1.7e-11 73.2 149 51.0
Atru.chr1.1520 Acer truncatum HOM05D005060 ORTHO05D005975 2.9e-11 72.4 152 46.7
PGR042G1122 Punica granatum HOM05D005060 ORTHO05D005975 3.9e-11 72.0 84 64.3
ClCG04G005980 Citrullus lanatus HOM05D005060 ORTHO05D005975 6.6e-11 71.2 125 47.2
CsaV3_4G029150 Cucumis sativus L. HOM05D005060 ORTHO05D005975 1.5e-10 70.1 137 43.8
CAN.G128.101 Capsicum annuum HOM05D005060 ORTHO05D005975 1.9e-10 69.7 152 38.8
Lalb_Chr24g0400621 Lupinus albus HOM05D005060 ORTHO05D005975 1.9e-10 69.7 157 43.3
Sabra16G0032200 Salix brachista HOM05D005060 ORTHO05D005975 2.5e-10 69.3 153 46.4
MELO3C019148.2 Cucumis melo HOM05D005060 ORTHO05D005975 3.3e-10 68.9 126 48.4
Gohir.D01G177000 Gossypium hirsutum HOM05D005060 ORTHO05D005975 3.3e-10 68.9 147 44.2
Gorai.002G226200 Gossypium raimondii HOM05D005060 ORTHO05D005975 3.3e-10 68.9 147 44.2
Lsat_1_v5_gn_8_109400 Lactuca sativa HOM05D005060 ORTHO05D005975 3.3e-10 68.9 143 40.6
MD07G1060800 Malus domestica HOM05D005060 ORTHO05D005975 4.3e-10 68.6 95 58.9
Thecc.05G132800 Theobroma cacao HOM05D005060 ORTHO05D005975 7.3e-10 67.8 149 43.6
Gohir.A01G192800 Gossypium hirsutum HOM05D005060 ORTHO05D005975 1.2e-09 67.0 147 43.5
Potri.016G027600 Populus trichocarpa HOM05D005060 ORTHO05D005975 1.6e-09 66.6 153 43.1
Nitab4.5_0003286g0020 Nicotiana tabacum HOM05D005060 ORTHO05D005975 2.8e-09 65.9 143 39.2
vmacro08973 Vaccinium macrocarpon HOM05D005060 ORTHO05D005975 3.6e-09 65.5 137 38.7
Medtr7g088520 Medicago truncatula HOM05D005060 ORTHO05D005975 4.7e-09 65.1 147 40.8
Rhsim04G0118500 Rhododendron simsii HOM05D005060 ORTHO05D005975 4.7e-09 65.1 150 38.0
TWI53G1989 Tripterygium wilfordii HOM05D005060 ORTHO05D005975 4.7e-09 65.1 145 42.8
Psat0s2745g0280 Pisum sativum HOM05D005060 ORTHO05D005975 8.0e-09 64.3 148 41.2
MD02G1260500 Malus domestica HOM05D005060 ORTHO05D005975 1.4e-08 63.5 156 39.7
Sed0011991 Sechium edule HOM05D005060 ORTHO05D005975 1.4e-08 63.5 137 40.9
Phvul.001G116500 Phaseolus vulgaris HOM05D005060 ORTHO05D005975 4.0e-08 62.0 145 45.5
VMungo1383G0657 Vigna mungo HOM05D005060 ORTHO05D005975 4.0e-08 62.0 145 46.2
Sabra16G0031900 Salix brachista HOM05D005060 ORTHO05D005975 6.8e-08 61.2 87 57.5
TPR.G27972 Trifolium pratense HOM05D005060 ORTHO05D005975 6.8e-08 61.2 150 47.3
Ah.13g077380 Amaranthus hybridus HOM05D005060 ORTHO05D005975 8.9e-08 60.8 145 42.1
Sopen10g031600 Solanum pennellii HOM05D005060 ORTHO05D005975 8.9e-08 60.8 152 34.2
Ah.04g150220 Amaranthus hybridus HOM05D005060 ORTHO05D005975 1.2e-07 60.5 87 56.3
Prupe.2G065900 Prunus persica HOM05D005060 ORTHO05D005975 1.2e-07 60.5 87 59.8
Cfa019938 Carpinus fangiana HOM05D005060 ORTHO05D005975 1.5e-07 60.1 90 56.7
FAN03G0591 Fragaria x ananassa HOM05D005060 ORTHO05D005975 1.5e-07 60.1 87 56.3
FAN10G4368 Fragaria x ananassa HOM05D002241 ORTHO05D002458 1.5e-07 60.1 89 56.2
RcHm_v2.0_Chr1g0331611 Rosa chinensis HOM05D005060 ORTHO05D005975 2.0e-07 59.7 149 43.6
unitig_21.g20673 Utricularia gibba HOM05D005060 ORTHO05D005975 2.0e-07 59.7 142 43.0
Ciclev10013047m.g Citrus clementina HOM05D005060 ORTHO05D005975 2.6e-07 59.3 139 43.2
Solyc10g081100.3 Solanum lycopersicum HOM05D005060 ORTHO05D005975 2.6e-07 59.3 152 34.2
Os01g0278900 Oryza sativa ssp. japonica HOM05D005060 ORTHO05D005975 3.4e-07 58.9 138 37.0
Gohir.A13G001200 Gossypium hirsutum HOM05D005060 ORTHO05D005975 4.4e-07 58.5 142 42.3
Haze_20306 Corylus avellana HOM05D005060 ORTHO05D005975 5.8e-07 58.2 91 57.1
Duzib093G0151 Durio zibethinus HOM05D005060 ORTHO05D005975 5.8e-07 58.2 146 43.2
Lj1C23T21 Lonicera japonica HOM05D005060 ORTHO05D005975 1.3e-06 57.0 89 47.2
arahy.Tifrunner.gnm1.ann1.3R5KQS Arachis hypogaea HOM05D005060 ORTHO05D005975 1.7e-06 56.6 145 42.8
PGSC0003DMG400028107 Solanum tuberosum HOM05D005060 ORTHO05D005975 1.7e-06 56.6 154 35.1
Glyma.19G124900 Glycine max HOM05D005060 ORTHO05D005975 2.2e-06 56.2 143 46.9
Eucgr.A02181 Eucalyptus grandis HOM05D005060 ORTHO05D005975 2.9e-06 55.8 152 42.8
FAN01G1650 Fragaria x ananassa HOM05D005060 ORTHO05D005975 3.7e-06 55.5 87 52.9
Sc13g0000780 Simmondsia chinensis HOM05D005060 ORTHO05D005975 4.9e-06 55.1 91 51.6
FvH4_7g05170 Fragaria vesca HOM05D005060 ORTHO05D005975 6.4e-06 54.7 87 56.3
FAN06G0894 Fragaria x ananassa HOM05D005060 ORTHO05D005975 6.4e-06 54.7 87 56.3
FAN06G1820 Fragaria x ananassa HOM05D002241 ORTHO05D002458 6.4e-06 54.7 87 56.3
HanXRQChr05g0130501 Helianthus annuus HOM05D005060 ORTHO05D005975 6.4e-06 54.7 151 34.4
Psat3g082360 Pisum sativum HOM05D005060 ORTHO05D005975 6.4e-06 54.7 150 42.0
TWI74G0004 Tripterygium wilfordii HOM05D005060 ORTHO05D005975 6.4e-06 54.7 150 40.7


User provided reference genes

Program Settings