Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g08331 Brassica carinata HOM05D004602 ORTHO05D014120 1.7e-45 185.7 93 100.0
Thhalv10005748m.g Eutrema salsugineum HOM05D004602 ORTHO05D005906 1.3e-08 63.2 33 87.9
AL5G38540 Arabidopsis lyrata HOM05D004602 ORTHO05D005906 1.6e-08 62.8 33 84.8
Sp5g05520 Schrenkiella parvula HOM05D004602 ORTHO05D005906 4.8e-08 61.2 32 90.6
BcaC02g09900 Brassica carinata HOM05D004602 ORTHO05D005906 6.2e-08 60.8 33 84.8
A04p03790 Brassica napus HOM05D004602 ORTHO05D005906 6.2e-08 60.8 33 87.9
C04p35390 Brassica napus HOM05D004602 ORTHO05D005906 6.2e-08 60.8 33 84.8
BolC4t25093H Brassica oleracea HOM05D004602 ORTHO05D005906 6.2e-08 60.8 33 84.8
Carub.0005s2386 Capsella rubella HOM05D004602 ORTHO05D005906 1.1e-07 60.1 33 78.8
CARHR167250 Cardamine hirsuta HOM05D004602 ORTHO05D005906 1.1e-07 60.1 30 90.0
C08p32390 Brassica napus HOM05D004602 ORTHO05D005906 1.8e-07 59.3 33 84.8
BraA04t16055Z Brassica rapa HOM05D004602 ORTHO05D005906 2.4e-07 58.9 33 84.8
AT3G57060 Arabidopsis thaliana HOM05D004602 ORTHO05D005906 3.1e-07 58.5 33 78.8
BcaC07g40081 Brassica carinata HOM05D004602 ORTHO05D005906 3.1e-07 58.5 71 50.7
BcaNung07305 Brassica carinata HOM05D004602 ORTHO05D005906 3.1e-07 58.5 61 52.5
Aa31LG10G11980 Aethionema arabicum HOM05D004602 ORTHO05D005906 4.0e-07 58.2 71 50.7
A09p49980 Brassica napus HOM05D004602 ORTHO05D005906 4.0e-07 58.2 71 50.7
BolC8t50853H Brassica oleracea HOM05D004602 ORTHO05D005906 4.0e-07 58.2 71 50.7
BraA09t40448Z Brassica rapa HOM05D004602 ORTHO05D005906 4.0e-07 58.2 71 50.7
TAR636G3632 Trochodendron aralioides HOM05D004602 ORTHO05D005906 4.0e-07 58.2 39 76.9
PGR031G1006 Punica granatum HOM05D004602 ORTHO05D005906 9.0e-07 57.0 50 62.0
Duzib106G0250 Durio zibethinus HOM05D004602 ORTHO05D005906 1.2e-06 56.6 39 74.4
Gohir.A11G308300 Gossypium hirsutum HOM05D004602 ORTHO05D005906 1.2e-06 56.6 39 74.4
Gohir.D11G323700 Gossypium hirsutum HOM05D004602 ORTHO05D005906 1.2e-06 56.6 39 74.4
Gorai.007G353800 Gossypium raimondii HOM05D004602 ORTHO05D005906 1.2e-06 56.6 39 74.4
Thecc.05G139800 Theobroma cacao HOM05D004602 ORTHO05D005906 1.2e-06 56.6 39 74.4
COL.COLO4_37951 Corchorus olitorius HOM05D004602 ORTHO05D005906 2.0e-06 55.8 39 74.4
PSO339G0660 Papaver somniferum HOM05D004602 ORTHO05D005906 2.0e-06 55.8 39 71.8
PSO384G2446 Papaver somniferum HOM05D004602 ORTHO05D005906 2.0e-06 55.8 39 71.8
COL.COLO4_37953 Corchorus olitorius HOM05D004602 ORTHO05D005906 2.6e-06 55.5 39 74.4
Manes.08G057600 Manihot esculenta HOM05D004602 ORTHO05D005906 2.6e-06 55.5 39 71.8
Nn2g14888 Nelumbo nucifera HOM05D004602 ORTHO05D005906 2.6e-06 55.5 31 77.4
Aqoxy2G00344 Aquilegia oxysepala HOM05D004602 ORTHO05D005906 4.4e-06 54.7 44 63.6
CANSAT56G2079 Cannabis sativa HOM05D004602 ORTHO05D005906 4.4e-06 54.7 39 71.8
CAN.G641.74 Capsicum annuum HOM05D004602 ORTHO05D005906 4.4e-06 54.7 55 52.7
FvH4_6g25220 Fragaria vesca HOM05D004602 ORTHO05D005906 4.4e-06 54.7 31 77.4
FAN05G3456 Fragaria x ananassa HOM05D004602 ORTHO05D014120 4.4e-06 54.7 31 77.4
FAN14G4483 Fragaria x ananassa HOM05D004602 ORTHO05D005906 4.4e-06 54.7 31 77.4
Sopen10g030360 Solanum pennellii HOM05D004602 ORTHO05D005906 4.4e-06 54.7 55 52.7
PGSC0003DMG400029835 Solanum tuberosum HOM05D004602 ORTHO05D005906 4.4e-06 54.7 55 52.7
BcaC07g40050 Brassica carinata HOM05D004602 ORTHO05D005906 5.8e-06 54.3 37 75.7
Lj1A1104G73 Lonicera japonica HOM05D004602 ORTHO05D005906 5.8e-06 54.3 50 56.0
RcHm_v2.0_Chr2g0125151 Rosa chinensis HOM05D004602 ORTHO05D005906 7.6e-06 53.9 39 69.2
GSVIVG01033598001 Vitis vinifera HOM05D004602 ORTHO05D005906 7.6e-06 53.9 50 58.0
arahy.Tifrunner.gnm1.ann1.0AC10P Arachis hypogaea HOM05D004602 ORTHO05D005906 9.9e-06 53.5 41 65.9
arahy.Tifrunner.gnm1.ann1.F5KNV4 Arachis hypogaea HOM05D004602 ORTHO05D005906 9.9e-06 53.5 41 65.9
CiPaw.09G045900 Carya illinoinensis HOM05D004602 ORTHO05D005906 9.9e-06 53.5 39 69.2
FAN09G3373 Fragaria x ananassa HOM05D004602 ORTHO05D005906 9.9e-06 53.5 31 74.2
Solyc10g079730.3 Solanum lycopersicum HOM05D004602 ORTHO05D005906 9.9e-06 53.5 55 50.9
THA.LOC104824412 Tarenaya hassleriana HOM05D004602 ORTHO05D005906 9.9e-06 53.5 84 42.9


User provided reference genes

Program Settings