Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g08287 Brassica carinata HOM05D003703 ORTHO05D004278 6.8e-87 323.9 162 100.0
BraA04t16007Z Brassica rapa HOM05D003703 ORTHO05D004278 4.6e-83 311.2 160 96.9
A04p02830 Brassica napus HOM05D003703 ORTHO05D004278 3.0e-82 308.5 160 96.2
A09p50780 Brassica napus HOM05D003703 ORTHO05D004278 9.6e-81 303.5 162 92.6
BolC8t50948H Brassica oleracea HOM05D003703 ORTHO05D004278 9.6e-81 303.5 160 93.1
BraA09t40525Z Brassica rapa HOM05D003703 ORTHO05D004278 1.3e-80 303.1 161 92.5
Sp5g04770 Schrenkiella parvula HOM05D003703 ORTHO05D004278 1.6e-80 302.8 163 92.6
C08p33500 Brassica napus HOM05D003703 ORTHO05D004278 2.8e-80 302.0 160 93.1
BolC4t25006H Brassica oleracea HOM05D003703 ORTHO05D004278 3.6e-80 301.6 163 94.5
BcaC07g40166 Brassica carinata HOM05D003703 ORTHO05D004278 2.6e-78 295.4 162 89.5
BcaC02g09974 Brassica carinata HOM05D003703 ORTHO05D004278 7.6e-78 293.9 162 91.4
C04p34420 Brassica napus HOM05D003703 ORTHO05D004278 2.2e-77 292.4 162 90.7
Thhalv10006259m.g Eutrema salsugineum HOM05D003703 ORTHO05D004278 2.4e-76 288.9 163 89.0
BcaC02g09973 Brassica carinata HOM05D003703 ORTHO05D004278 1.6e-75 286.2 160 91.2
CARHR168260 Cardamine hirsuta HOM05D003703 ORTHO05D004278 9.6e-73 276.9 165 87.3
AT3G57950 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 2.0e-70 269.2 164 84.1
BcaB02g08285 Brassica carinata HOM05D003703 ORTHO05D004278 3.4e-70 268.5 160 85.0
C04p34430 Brassica napus HOM05D003703 ORTHO05D004278 1.2e-67 260.0 160 83.8
Carub.0005s2479 Capsella rubella HOM05D003703 ORTHO05D004278 3.5e-67 258.5 169 79.9
AL5G39600 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 4.8e-64 248.1 166 78.9
Aa31LG10G12650 Aethionema arabicum HOM05D003703 ORTHO05D004278 1.7e-53 213.0 162 71.6
THA.LOC104802486 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 8.2e-48 194.1 190 60.0
Carub.0004s2452 Capsella rubella HOM05D003703 ORTHO05D004278 1.8e-39 166.4 168 61.3
Sp4g24360 Schrenkiella parvula HOM05D003703 ORTHO05D004278 1.2e-38 163.7 163 60.1
AT2G42180 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 2.5e-36 156.0 165 58.2
Manes.08G045500 Manihot esculenta HOM05D003703 ORTHO05D004278 3.6e-35 152.1 168 50.6
CiPaw.09G031500 Carya illinoinensis HOM05D003703 ORTHO05D004278 4.7e-35 151.8 177 51.4
BcaC02g12466 Brassica carinata HOM05D003703 ORTHO05D004278 1.4e-34 150.2 162 55.6
BolC4t21971H Brassica oleracea HOM05D003703 ORTHO05D004278 1.4e-34 150.2 162 55.6
Manes.09G033600 Manihot esculenta HOM05D003703 ORTHO05D004278 1.8e-34 149.8 177 51.4
C04p03340 Brassica napus HOM05D003703 ORTHO05D004278 2.3e-34 149.4 162 55.6
Cpa.g.c33371 Carica papaya HOM05D003703 ORTHO05D004278 3.0e-34 149.1 183 51.4
QL07p023397 Quercus lobata HOM05D003703 ORTHO05D004278 5.1e-34 148.3 174 50.6
BcaNung04405 Brassica carinata HOM05D003703 ORTHO05D004278 6.7e-34 147.9 162 56.2
Atru.chr8.1077 Acer truncatum HOM05D003703 ORTHO05D004278 8.8e-34 147.5 177 52.0
BraA05t19267Z Brassica rapa HOM05D003703 ORTHO05D004278 1.5e-33 146.7 162 53.7
CiPaw.10G027200 Carya illinoinensis HOM05D003703 ORTHO05D004278 5.7e-33 144.8 178 47.8
HanXRQChr10g0300741 Helianthus annuus HOM05D003703 ORTHO05D004278 5.7e-33 144.8 169 50.9
AL4G40540 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 9.7e-33 144.1 162 54.3
A05p02750 Brassica napus HOM05D003703 ORTHO05D004278 1.3e-32 143.7 162 53.1
Lsat_1_v5_gn_9_26721 Lactuca sativa HOM05D003703 ORTHO05D004278 1.7e-32 143.3 174 49.4
Gohir.A09G127300 Gossypium hirsutum HOM05D003703 ORTHO05D004278 2.8e-32 142.5 180 49.4
Nitab4.5_0002035g0010 Nicotiana tabacum HOM05D003703 ORTHO05D004278 2.8e-32 142.5 173 49.1
Potri.006G191100 Populus trichocarpa HOM05D003703 ORTHO05D004278 2.8e-32 142.5 180 50.6
Gohir.D09G123500 Gossypium hirsutum HOM05D003703 ORTHO05D004278 4.8e-32 141.7 181 47.5
Gorai.006G142100 Gossypium raimondii HOM05D003703 ORTHO05D004278 4.8e-32 141.7 181 47.5
Nitab4.5_0000016g0390 Nicotiana tabacum HOM05D003703 ORTHO05D004278 4.8e-32 141.7 176 48.9
Ah.13g075990 Amaranthus hybridus HOM05D003703 ORTHO05D004278 6.3e-32 141.4 195 45.1
CAN.G515.11 Capsicum annuum HOM05D003703 ORTHO05D004278 8.2e-32 141.0 175 50.3
Potri.016G047800 Populus trichocarpa HOM05D003703 ORTHO05D004278 1.1e-31 140.6 180 47.8
Sed0017921 Sechium edule HOM05D003703 ORTHO05D004278 1.4e-31 140.2 165 50.9
Duzib093G1286 Durio zibethinus HOM05D003703 ORTHO05D004278 1.8e-31 139.8 180 48.9
Gohir.D01G177600 Gossypium hirsutum HOM05D003703 ORTHO05D004278 1.8e-31 139.8 173 49.7
COL.COLO4_36150 Corchorus olitorius HOM05D003703 ORTHO05D004278 2.4e-31 139.4 180 46.1
Thecc.05G169900 Theobroma cacao HOM05D003703 ORTHO05D004278 2.4e-31 139.4 179 46.9
ECA247G0725 Erigeron canadensis HOM05D003703 ORTHO05D004278 3.1e-31 139.0 170 48.8
PGSC0003DMG400009700 Solanum tuberosum HOM05D003703 ORTHO05D004278 3.1e-31 139.0 173 49.7
Gorai.002G225600 Gossypium raimondii HOM05D003703 ORTHO05D004278 5.3e-31 138.3 173 49.1
CSS0005195 Camellia sinensis var. sinensis HOM05D003703 ORTHO05D004278 7.0e-31 137.9 178 51.7
Solyc03g063550.1 Solanum lycopersicum HOM05D003703 ORTHO05D004278 7.0e-31 137.9 168 49.4
DCAR_013556 Daucus carota HOM05D003703 ORTHO05D004278 9.1e-31 137.5 170 47.1
Glyma.09G112700 Glycine max HOM05D003703 ORTHO05D004278 9.1e-31 137.5 178 47.2
Sabra16G0051300 Salix brachista HOM05D003703 ORTHO05D004278 9.1e-31 137.5 180 47.8
Oeu007772.1 Olea europaea HOM05D003703 ORTHO05D004278 1.6e-30 136.7 169 50.9
AUR62012046 Chenopodium quinoa HOM05D003703 ORTHO05D004278 2.0e-30 136.3 204 45.1
Lj1g0027593 Lotus japonicus HOM05D003703 ORTHO05D004278 2.0e-30 136.3 172 49.4
Duzib106G1084 Durio zibethinus HOM05D003703 ORTHO05D004278 2.6e-30 136.0 180 47.8
Sabra06G0146400 Salix brachista HOM05D003703 ORTHO05D004278 2.6e-30 136.0 177 48.0
Ciclev10012846m.g Citrus clementina HOM05D003703 ORTHO05D004278 3.5e-30 135.6 181 48.6
Gohir.A01G192300 Gossypium hirsutum HOM05D003703 ORTHO05D004278 3.5e-30 135.6 173 49.1
Peaxi162Scf00258g00023 Petunia axillaris HOM05D003703 ORTHO05D004278 3.5e-30 135.6 178 46.1
Gorai.006G067100 Gossypium raimondii HOM05D003703 ORTHO05D004278 4.5e-30 135.2 175 48.0
Lj2P370T14 Lonicera japonica HOM05D003703 ORTHO05D004278 4.5e-30 135.2 173 50.9
Oeu035192.1 Olea europaea HOM05D003703 ORTHO05D004278 5.9e-30 134.8 174 46.0
Gohir.D04G098100 Gossypium hirsutum HOM05D003703 ORTHO05D004278 1.0e-29 134.0 175 47.4
CsaV3_5G027200 Cucumis sativus L. HOM05D003703 ORTHO05D004278 1.3e-29 133.7 166 48.2
Actinidia38577 Actinidia chinensis HOM05D003703 ORTHO05D004278 1.7e-29 133.3 163 49.7
Lalb_Chr18g0047801 Lupinus albus HOM05D003703 ORTHO05D004278 2.2e-29 132.9 178 44.9
Lsat_1_v5_gn_8_74300 Lactuca sativa HOM05D003703 ORTHO05D004278 2.9e-29 132.5 177 48.6
Cc06_g16110 Coffea canephora HOM05D003703 ORTHO05D004278 5.0e-29 131.7 184 41.8
RcHm_v2.0_Chr3g0479981 Rosa chinensis HOM05D003703 ORTHO05D004278 5.0e-29 131.7 189 46.0
Actinidia40438 Actinidia chinensis HOM05D003703 ORTHO05D004278 6.5e-29 131.3 162 50.0
MSTRG.6472 Avicennia marina HOM05D003703 ORTHO05D004278 6.5e-29 131.3 178 42.7
FvH4_6g22530 Fragaria vesca HOM05D003703 ORTHO05D004278 8.5e-29 131.0 188 47.3
FAN14G3432 Fragaria x ananassa HOM05D003703 ORTHO05D004278 8.5e-29 131.0 188 47.3
FAN14G3905 Fragaria x ananassa HOM05D003703 ORTHO05D004278 8.5e-29 131.0 188 47.3
ClCG09G019210 Citrullus lanatus HOM05D003703 ORTHO05D004278 1.9e-28 129.8 163 47.9
SGA_v2.0_scaffold4546G54500 Striga asiatica HOM05D003703 ORTHO05D004278 1.9e-28 129.8 175 46.3
FAN05G5107 Fragaria x ananassa HOM05D003703 ORTHO05D004278 2.5e-28 129.4 188 47.3
Hma1.2p1_0183F.1_g080800 Hydrangea macrophylla HOM05D003703 ORTHO05D004278 2.5e-28 129.4 176 47.7
Lalb_Chr15g0078951 Lupinus albus HOM05D003703 ORTHO05D004278 2.5e-28 129.4 184 44.6
ECA236G4442 Erigeron canadensis HOM05D003703 ORTHO05D004278 3.2e-28 129.0 164 48.2
Glyma.02G178400 Glycine max HOM05D003703 ORTHO05D004278 3.2e-28 129.0 177 44.1
Psat3g069120 Pisum sativum HOM05D003703 ORTHO05D004278 3.2e-28 129.0 168 47.0
Migut.K00046 Erythranthe guttata HOM05D003703 ORTHO05D004278 5.5e-28 128.3 184 42.4
TWI74G0378 Tripterygium wilfordii HOM05D003703 ORTHO05D004278 5.5e-28 128.3 176 46.6
DCAR_017016 Daucus carota HOM05D003703 ORTHO05D004278 7.2e-28 127.9 173 47.4
FAN09G0581 Fragaria x ananassa HOM05D003703 ORTHO05D004278 9.4e-28 127.5 188 44.7
AL6G16900 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 1.2e-27 127.1 188 44.1
arahy.Tifrunner.gnm1.ann1.6W7ZDH Arachis hypogaea HOM05D003703 ORTHO05D004278 1.2e-27 127.1 178 46.1
FAN02G0416 Fragaria x ananassa HOM05D003703 ORTHO05D004278 1.2e-27 127.1 188 45.7
CARHR206390 Cardamine hirsuta HOM05D003703 ORTHO05D004278 2.1e-27 126.3 187 43.3
Thhalv10014619m.g Eutrema salsugineum HOM05D003703 ORTHO05D004278 2.1e-27 126.3 195 44.1
Lju124C28G5 Lonicera japonica HOM05D003703 ORTHO05D004278 2.1e-27 126.3 171 48.5
Sp6g36065 Schrenkiella parvula HOM05D003703 ORTHO05D004278 2.1e-27 126.3 185 44.9
Sopen03g016210 Solanum pennellii HOM05D003703 ORTHO05D004278 2.7e-27 125.9 120 58.3
MELO3C021570.2 Cucumis melo HOM05D003703 ORTHO05D004278 3.6e-27 125.6 167 46.7
Medtr7g093040 Medicago truncatula HOM05D003703 ORTHO05D004278 3.6e-27 125.6 172 44.2
THA.LOC104826767 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 3.6e-27 125.6 186 46.2
AT5G06790 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 4.7e-27 125.2 185 44.9
BraA10t45001Z Brassica rapa HOM05D003703 ORTHO05D004278 4.7e-27 125.2 185 45.4
Migut.J01826 Erythranthe guttata HOM05D003703 ORTHO05D004278 4.7e-27 125.2 178 44.9
SalBow6G1024 Salvia bowleyana HOM05D003703 ORTHO05D004278 4.7e-27 125.2 162 46.3
SalBow6G3273 Salvia bowleyana HOM05D003703 ORTHO05D004278 4.7e-27 125.2 162 46.3
A10p29590 Brassica napus HOM05D003703 ORTHO05D004278 6.1e-27 124.8 185 45.4
DCAR_017017 Daucus carota HOM05D003703 ORTHO05D004278 8.0e-27 124.4 173 45.7
THA.LOC104824607 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 8.0e-27 124.4 123 58.5
MD14G1059200 Malus domestica HOM05D003703 ORTHO05D004278 1.0e-26 124.0 186 45.2
Actinidia22024 Actinidia chinensis HOM05D003703 ORTHO05D004278 1.8e-26 123.2 162 47.5
BcaC06g32542 Brassica carinata HOM05D003703 ORTHO05D004278 1.8e-26 123.2 188 44.7
Ca_08513_v3 Cicer arietinum L. HOM05D003703 ORTHO05D004278 2.3e-26 122.9 153 49.7
Rhsim03G0008400 Rhododendron simsii HOM05D003703 ORTHO05D004278 3.0e-26 122.5 173 49.1
Carub.0006s0568 Capsella rubella HOM05D003703 ORTHO05D004278 4.0e-26 122.1 196 41.3
Glyma.19G146900 Glycine max HOM05D003703 ORTHO05D004278 4.0e-26 122.1 174 46.6
TAR633G0624 Trochodendron aralioides HOM05D004867 ORTHO05D005729 4.0e-26 122.1 179 43.6
MD12G1058500 Malus domestica HOM05D003703 ORTHO05D004278 5.2e-26 121.7 185 44.3
Phvul.001G141500 Phaseolus vulgaris HOM05D003703 ORTHO05D004278 1.1e-25 120.6 173 46.8
CANSAT64G0621 Cannabis sativa HOM05D003703 ORTHO05D004278 1.5e-25 120.2 207 42.0
Cfa020181 Carpinus fangiana HOM05D003703 ORTHO05D004278 2.0e-25 119.8 183 43.7
MBI01_g36100_MAGBIO Magnolia biondii HOM05D003703 ORTHO05D004278 2.6e-25 119.4 174 45.4
SalBow1G5050 Salvia bowleyana HOM05D003703 ORTHO05D004278 2.6e-25 119.4 166 45.2
MSTRG.19899 Avicennia marina HOM05D003703 ORTHO05D004278 3.3e-25 119.0 180 40.6
Sed0013585 Sechium edule HOM05D003703 ORTHO05D004278 5.7e-25 118.2 166 46.4
Prupe.7G075500 Prunus persica HOM05D003703 ORTHO05D004278 1.3e-24 117.1 187 41.7
Glyma.03G143800 Glycine max HOM05D003703 ORTHO05D004278 1.7e-24 116.7 176 43.8
VMungo1383G3663 Vigna mungo HOM05D003703 ORTHO05D004278 1.7e-24 116.7 173 44.5
TWI53G0257 Tripterygium wilfordii HOM05D003703 ORTHO05D004278 2.2e-24 116.3 180 44.4
TPR.G18214 Trifolium pratense HOM05D003703 ORTHO05D004278 3.7e-24 115.5 176 42.6
BcaC06g32394 Brassica carinata HOM05D003703 ORTHO05D004278 6.3e-24 114.8 194 42.3
BolC9t59739H Brassica oleracea HOM05D003703 ORTHO05D004278 6.3e-24 114.8 194 42.3
Aqoxy2G00073 Aquilegia oxysepala HOM05D003703 ORTHO05D004278 8.2e-24 114.4 184 38.0
C09p69970 Brassica napus HOM05D003703 ORTHO05D004278 8.2e-24 114.4 195 42.1
PGR142G3046 Punica granatum HOM05D003703 ORTHO05D004278 1.1e-23 114.0 187 42.2
EL10Ac3g06932 Beta vulgaris HOM05D003703 ORTHO05D004278 2.4e-23 112.8 147 45.6
SGA_v2.0_scaffold94G28431 Striga asiatica HOM05D003703 ORTHO05D004278 2.4e-23 112.8 183 43.2
ClCG10G017430 Citrullus lanatus HOM05D003703 ORTHO05D004278 4.1e-23 112.1 168 42.9
Psat6g128520 Pisum sativum HOM05D003703 ORTHO05D004278 9.1e-23 110.9 179 43.0
VMungo0720G2172 Vigna mungo HOM05D003703 ORTHO05D004278 1.2e-22 110.5 171 43.3
Dinv24085 Davidia involucrata HOM05D001227 ORTHO05D001082 2.0e-22 109.8 155 45.2
Eucgr.K01832 Eucalyptus grandis HOM05D003703 ORTHO05D004278 2.0e-22 109.8 182 40.7
MSTRG.10837 Avicennia marina HOM05D003703 ORTHO05D004278 2.7e-22 109.4 181 43.1
Haze_19973 Corylus avellana HOM05D003703 ORTHO05D004278 2.7e-22 109.4 124 51.6
Phvul.007G258900 Phaseolus vulgaris HOM05D003703 ORTHO05D004278 2.7e-22 109.4 171 42.1
TPR.G27747 Trifolium pratense HOM05D003703 ORTHO05D004278 3.5e-22 109.0 187 42.2
Lj5g0003065 Lotus japonicus HOM05D003703 ORTHO05D004278 1.0e-21 107.5 168 41.1
PGR004G2865 Punica granatum HOM05D003703 ORTHO05D004278 2.2e-21 106.3 179 40.8
SalBow1G5631 Salvia bowleyana HOM05D003703 ORTHO05D004278 2.2e-21 106.3 148 45.3
Ah.04g152400 Amaranthus hybridus HOM05D003703 ORTHO05D004278 2.9e-21 105.9 152 45.4
AUR62024314 Chenopodium quinoa HOM05D003703 ORTHO05D004278 3.8e-21 105.5 155 42.6
Medtr1g053900 Medicago truncatula HOM05D003703 ORTHO05D004278 6.5e-21 104.8 171 43.3
SHI16104 Sapria himalayana HOM05D003703 ORTHO05D004278 6.5e-21 104.8 153 47.1
TAR369G1018 Trochodendron aralioides HOM05D003703 ORTHO05D004278 1.1e-20 104.0 182 40.7
HanXRQChr13g0389341 Helianthus annuus HOM05D003703 ORTHO05D004278 1.5e-20 103.6 172 42.4
PSO675G1999 Papaver somniferum HOM05D003703 ORTHO05D004278 1.9e-20 103.2 193 36.8
Lalb_Chr07g0188981 Lupinus albus HOM05D003703 ORTHO05D004278 5.5e-20 101.7 186 41.9
DCAR_019841 Daucus carota HOM05D003703 ORTHO05D004278 1.2e-19 100.5 113 54.0
Sc13g0002220 Simmondsia chinensis HOM05D003703 ORTHO05D004278 3.6e-19 99.0 173 41.0
CsaV3_3G038930 Cucumis sativus L. HOM05D003703 ORTHO05D004278 4.7e-19 98.6 146 40.4
ECA248G0990 Erigeron canadensis HOM05D003703 ORTHO05D004278 3.0e-18 95.9 175 38.9
Ca_25700_v3 Cicer arietinum L. HOM05D003703 ORTHO05D004278 1.3e-16 90.5 113 47.8
Sc25g0005120 Simmondsia chinensis HOM05D003703 ORTHO05D004278 3.1e-15 85.9 105 48.6
PSO017G5564 Papaver somniferum HOM05D003703 ORTHO05D004278 7.7e-14 81.3 136 37.5
PSO339G4803 Papaver somniferum HOM05D003703 ORTHO05D004278 7.7e-14 81.3 133 39.1
PSO063G6729 Papaver somniferum HOM05D003703 ORTHO05D004278 1.0e-13 80.9 137 38.0
Eucgr.A02445 Eucalyptus grandis HOM05D003703 ORTHO05D004278 7.2e-12 74.7 172 36.6
Sc19g0006980 Simmondsia chinensis HOM05D003703 ORTHO05D004278 1.2e-11 73.9 72 54.2
CDE05G1581 Ceratophyllum demersum HOM05D003703 ORTHO05D004278 1.6e-11 73.6 155 35.5
Aa31sc24G60 Aethionema arabicum HOM05D003703 ORTHO05D004278 3.6e-11 72.4 71 54.9
Carub.0004s2450 Capsella rubella HOM05D003703 ORTHO05D004278 6.1e-11 71.6 165 38.8
CDE02G1004 Ceratophyllum demersum HOM05D003703 ORTHO05D004278 9.8e-09 64.3 155 32.3
Gohir.A04G052101 Gossypium hirsutum HOM05D003703 ORTHO05D004278 9.8e-09 64.3 72 48.6
Os09g0279200 Oryza sativa ssp. japonica HOM05D003703 ORTHO05D004278 1.3e-08 63.9 76 48.7
Os04g0665666 Oryza sativa ssp. japonica HOM05D003703 ORTHO05D004278 4.1e-07 58.9 158 29.1
MELO3C009637.2 Cucumis melo HOM05D003703 ORTHO05D004278 1.6e-06 57.0 116 33.6


User provided reference genes

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