Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g08285 Brassica carinata HOM05D003703 ORTHO05D004278 2.5e-95 352.1 173 100.0
BcaB02g08287 Brassica carinata HOM05D003703 ORTHO05D004278 2.1e-70 269.2 160 85.0
BraA04t16007Z Brassica rapa HOM05D003703 ORTHO05D004278 6.9e-69 264.2 160 83.8
A09p50780 Brassica napus HOM05D003703 ORTHO05D004278 9.0e-69 263.8 161 82.0
BraA09t40525Z Brassica rapa HOM05D003703 ORTHO05D004278 9.0e-69 263.8 161 82.0
BolC8t50948H Brassica oleracea HOM05D003703 ORTHO05D004278 1.5e-68 263.1 160 83.1
A04p02830 Brassica napus HOM05D003703 ORTHO05D004278 2.6e-68 262.3 160 83.1
C04p34420 Brassica napus HOM05D003703 ORTHO05D004278 4.5e-68 261.5 161 82.0
C08p33500 Brassica napus HOM05D003703 ORTHO05D004278 5.8e-68 261.2 160 82.5
BcaC02g09974 Brassica carinata HOM05D003703 ORTHO05D004278 2.2e-67 259.2 161 81.4
BolC4t25006H Brassica oleracea HOM05D003703 ORTHO05D004278 2.9e-67 258.8 162 82.1
Sp5g04770 Schrenkiella parvula HOM05D003703 ORTHO05D004278 8.4e-67 257.3 162 80.9
BcaC07g40166 Brassica carinata HOM05D003703 ORTHO05D004278 1.9e-66 256.1 161 80.1
BcaC02g09973 Brassica carinata HOM05D003703 ORTHO05D004278 2.8e-62 242.3 160 80.0
Thhalv10006259m.g Eutrema salsugineum HOM05D003703 ORTHO05D004278 2.8e-62 242.3 162 77.2
CARHR168260 Cardamine hirsuta HOM05D003703 ORTHO05D004278 1.4e-58 229.9 164 75.0
AT3G57950 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 3.2e-58 228.8 163 74.8
Carub.0005s2479 Capsella rubella HOM05D003703 ORTHO05D004278 6.0e-57 224.6 168 70.2
C04p34430 Brassica napus HOM05D003703 ORTHO05D004278 6.7e-56 221.1 160 73.1
AL5G39600 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 4.1e-53 211.8 165 70.3
Aa31LG10G12650 Aethionema arabicum HOM05D003703 ORTHO05D004278 3.1e-45 185.7 161 64.0
THA.LOC104802486 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 7.9e-41 171.0 182 54.9
HanXRQChr10g0300741 Helianthus annuus HOM05D003703 ORTHO05D004278 2.8e-30 136.0 169 47.3
Sp4g24360 Schrenkiella parvula HOM05D003703 ORTHO05D004278 2.8e-30 136.0 161 52.8
AT2G42180 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 4.8e-30 135.2 162 51.2
Lj1g0027593 Lotus japonicus HOM05D003703 ORTHO05D004278 8.2e-30 134.4 169 46.2
Cpa.g.c33371 Carica papaya HOM05D003703 ORTHO05D004278 1.4e-29 133.7 180 45.0
CiPaw.09G031500 Carya illinoinensis HOM05D003703 ORTHO05D004278 1.8e-29 133.3 174 46.0
Manes.08G045500 Manihot esculenta HOM05D003703 ORTHO05D004278 1.8e-29 133.3 165 44.8
Lsat_1_v5_gn_9_26721 Lactuca sativa HOM05D003703 ORTHO05D004278 7.0e-29 131.3 172 45.3
COL.COLO4_36150 Corchorus olitorius HOM05D003703 ORTHO05D004278 9.1e-29 131.0 178 43.3
Lalb_Chr15g0078951 Lupinus albus HOM05D003703 ORTHO05D004278 2.0e-28 129.8 181 42.0
Manes.09G033600 Manihot esculenta HOM05D003703 ORTHO05D004278 2.0e-28 129.8 174 43.1
BcaC02g12466 Brassica carinata HOM05D003703 ORTHO05D004278 2.6e-28 129.4 160 50.6
BcaNung04405 Brassica carinata HOM05D003703 ORTHO05D004278 2.6e-28 129.4 160 50.6
BolC4t21971H Brassica oleracea HOM05D003703 ORTHO05D004278 2.6e-28 129.4 160 50.6
Carub.0004s2452 Capsella rubella HOM05D003703 ORTHO05D004278 2.6e-28 129.4 166 50.6
Glyma.09G112700 Glycine max HOM05D003703 ORTHO05D004278 2.6e-28 129.4 176 43.8
ECA247G0725 Erigeron canadensis HOM05D003703 ORTHO05D004278 3.5e-28 129.0 167 46.1
C04p03340 Brassica napus HOM05D003703 ORTHO05D004278 4.5e-28 128.6 160 50.6
CiPaw.10G027200 Carya illinoinensis HOM05D003703 ORTHO05D004278 7.7e-28 127.9 175 43.4
Sabra16G0051300 Salix brachista HOM05D003703 ORTHO05D004278 1.3e-27 127.1 177 44.6
Lalb_Chr18g0047801 Lupinus albus HOM05D003703 ORTHO05D004278 2.2e-27 126.3 175 42.9
Potri.006G191100 Populus trichocarpa HOM05D003703 ORTHO05D004278 2.2e-27 126.3 177 45.8
BraA05t19267Z Brassica rapa HOM05D003703 ORTHO05D004278 3.8e-27 125.6 160 48.8
QL07p023397 Quercus lobata HOM05D003703 ORTHO05D004278 3.8e-27 125.6 173 46.2
Psat3g069120 Pisum sativum HOM05D003703 ORTHO05D004278 5.0e-27 125.2 166 46.4
Ah.13g075990 Amaranthus hybridus HOM05D003703 ORTHO05D004278 6.5e-27 124.8 192 39.6
CAN.G515.11 Capsicum annuum HOM05D003703 ORTHO05D004278 8.5e-27 124.4 176 44.9
Gohir.D09G123500 Gossypium hirsutum HOM05D003703 ORTHO05D004278 8.5e-27 124.4 178 43.3
Gorai.006G142100 Gossypium raimondii HOM05D003703 ORTHO05D004278 1.1e-26 124.0 178 43.3
Lsat_1_v5_gn_8_74300 Lactuca sativa HOM05D003703 ORTHO05D004278 1.1e-26 124.0 174 44.8
Sabra06G0146400 Salix brachista HOM05D003703 ORTHO05D004278 1.1e-26 124.0 174 42.5
AL4G40540 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 1.9e-26 123.2 160 48.1
Gohir.A09G127300 Gossypium hirsutum HOM05D003703 ORTHO05D004278 1.9e-26 123.2 177 43.5
Medtr7g093040 Medicago truncatula HOM05D003703 ORTHO05D004278 2.5e-26 122.9 169 44.4
Potri.016G047800 Populus trichocarpa HOM05D003703 ORTHO05D004278 2.5e-26 122.9 177 42.9
A05p02750 Brassica napus HOM05D003703 ORTHO05D004278 3.2e-26 122.5 160 48.1
Atru.chr8.1077 Acer truncatum HOM05D003703 ORTHO05D004278 4.2e-26 122.1 175 46.3
AUR62012046 Chenopodium quinoa HOM05D003703 ORTHO05D004278 4.2e-26 122.1 199 40.2
DCAR_013556 Daucus carota HOM05D003703 ORTHO05D004278 4.2e-26 122.1 168 43.5
Duzib093G1286 Durio zibethinus HOM05D003703 ORTHO05D004278 4.2e-26 122.1 177 44.6
Glyma.02G178400 Glycine max HOM05D003703 ORTHO05D004278 4.2e-26 122.1 174 41.4
Gohir.D01G177600 Gossypium hirsutum HOM05D003703 ORTHO05D004278 5.5e-26 121.7 170 44.1
Nitab4.5_0002035g0010 Nicotiana tabacum HOM05D003703 ORTHO05D004278 5.5e-26 121.7 177 44.1
Duzib106G1084 Durio zibethinus HOM05D003703 ORTHO05D004278 9.4e-26 120.9 177 41.2
Nitab4.5_0000016g0390 Nicotiana tabacum HOM05D003703 ORTHO05D004278 9.4e-26 120.9 175 43.4
Oeu007772.1 Olea europaea HOM05D003703 ORTHO05D004278 1.2e-25 120.6 166 47.0
Ciclev10012846m.g Citrus clementina HOM05D003703 ORTHO05D004278 1.6e-25 120.2 178 42.7
ClCG09G019210 Citrullus lanatus HOM05D003703 ORTHO05D004278 2.1e-25 119.8 161 44.7
Gorai.002G225600 Gossypium raimondii HOM05D003703 ORTHO05D004278 2.1e-25 119.8 170 43.5
THA.LOC104826767 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 2.1e-25 119.8 183 44.3
CARHR206390 Cardamine hirsuta HOM05D003703 ORTHO05D004278 3.6e-25 119.0 186 42.5
Phvul.001G141500 Phaseolus vulgaris HOM05D003703 ORTHO05D004278 3.6e-25 119.0 171 43.9
Sed0017921 Sechium edule HOM05D003703 ORTHO05D004278 3.6e-25 119.0 162 45.7
AL6G16900 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 4.7e-25 118.6 187 46.0
Oeu035192.1 Olea europaea HOM05D003703 ORTHO05D004278 4.7e-25 118.6 171 42.1
Thecc.05G169900 Theobroma cacao HOM05D003703 ORTHO05D004278 6.1e-25 118.2 176 40.3
BraA10t45001Z Brassica rapa HOM05D003703 ORTHO05D004278 8.0e-25 117.9 183 43.2
Gohir.A01G192300 Gossypium hirsutum HOM05D003703 ORTHO05D004278 1.0e-24 117.5 170 43.5
CsaV3_5G027200 Cucumis sativus L. HOM05D003703 ORTHO05D004278 1.4e-24 117.1 164 43.3
Gohir.D04G098100 Gossypium hirsutum HOM05D003703 ORTHO05D004278 1.4e-24 117.1 172 43.0
AT5G06790 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 1.8e-24 116.7 184 42.9
Gorai.006G067100 Gossypium raimondii HOM05D003703 ORTHO05D004278 1.8e-24 116.7 172 43.0
TWI74G0378 Tripterygium wilfordii HOM05D003703 ORTHO05D004278 1.8e-24 116.7 173 43.4
A10p29590 Brassica napus HOM05D003703 ORTHO05D004278 2.3e-24 116.3 183 42.6
Glyma.19G146900 Glycine max HOM05D003703 ORTHO05D004278 2.3e-24 116.3 172 43.6
Phvul.007G258900 Phaseolus vulgaris HOM05D003703 ORTHO05D004278 2.3e-24 116.3 169 44.4
Peaxi162Scf00258g00023 Petunia axillaris HOM05D003703 ORTHO05D004278 3.0e-24 115.9 176 41.5
RcHm_v2.0_Chr3g0479981 Rosa chinensis HOM05D003703 ORTHO05D004278 3.0e-24 115.9 186 41.9
VMungo1383G3663 Vigna mungo HOM05D003703 ORTHO05D004278 3.0e-24 115.9 171 42.7
CSS0005195 Camellia sinensis var. sinensis HOM05D003703 ORTHO05D004278 4.0e-24 115.5 173 44.5
arahy.Tifrunner.gnm1.ann1.6W7ZDH Arachis hypogaea HOM05D003703 ORTHO05D004278 6.7e-24 114.8 175 44.0
Actinidia38577 Actinidia chinensis HOM05D003703 ORTHO05D004278 8.8e-24 114.4 161 41.6
MSTRG.6472 Avicennia marina HOM05D003703 ORTHO05D004278 8.8e-24 114.4 175 39.4
THA.LOC104824607 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 8.8e-24 114.4 119 55.5
DCAR_017016 Daucus carota HOM05D003703 ORTHO05D004278 1.1e-23 114.0 170 42.9
FvH4_6g22530 Fragaria vesca HOM05D003703 ORTHO05D004278 1.1e-23 114.0 184 41.3
FAN14G3432 Fragaria x ananassa HOM05D003703 ORTHO05D004278 1.1e-23 114.0 184 41.3
FAN14G3905 Fragaria x ananassa HOM05D003703 ORTHO05D004278 1.1e-23 114.0 184 41.3
Lj2P370T14 Lonicera japonica HOM05D003703 ORTHO05D004278 1.5e-23 113.6 169 45.6
Ca_08513_v3 Cicer arietinum L. HOM05D003703 ORTHO05D004278 3.3e-23 112.5 152 48.0
Thhalv10014619m.g Eutrema salsugineum HOM05D003703 ORTHO05D004278 3.3e-23 112.5 192 40.1
FAN05G5107 Fragaria x ananassa HOM05D003703 ORTHO05D004278 3.3e-23 112.5 184 41.3
Actinidia40438 Actinidia chinensis HOM05D003703 ORTHO05D004278 4.4e-23 112.1 160 45.0
Rhsim03G0008400 Rhododendron simsii HOM05D003703 ORTHO05D004278 4.4e-23 112.1 150 44.0
FAN02G0416 Fragaria x ananassa HOM05D003703 ORTHO05D004278 7.5e-23 111.3 184 40.8
MD14G1059200 Malus domestica HOM05D003703 ORTHO05D004278 7.5e-23 111.3 183 41.0
PGSC0003DMG400009700 Solanum tuberosum HOM05D003703 ORTHO05D004278 7.5e-23 111.3 170 42.4
TAR633G0624 Trochodendron aralioides HOM05D004867 ORTHO05D005729 7.5e-23 111.3 173 39.3
MELO3C021570.2 Cucumis melo HOM05D003703 ORTHO05D004278 9.7e-23 110.9 165 42.4
Migut.K00046 Erythranthe guttata HOM05D003703 ORTHO05D004278 9.7e-23 110.9 182 39.0
FAN09G0581 Fragaria x ananassa HOM05D003703 ORTHO05D004278 9.7e-23 110.9 184 40.2
PGR004G2865 Punica granatum HOM05D003703 ORTHO05D004278 9.7e-23 110.9 179 40.2
BcaC06g32542 Brassica carinata HOM05D003703 ORTHO05D004278 1.3e-22 110.5 185 40.0
Sp6g36065 Schrenkiella parvula HOM05D003703 ORTHO05D004278 1.3e-22 110.5 183 41.5
SGA_v2.0_scaffold4546G54500 Striga asiatica HOM05D003703 ORTHO05D004278 1.3e-22 110.5 178 41.0
Cc06_g16110 Coffea canephora HOM05D003703 ORTHO05D004278 1.7e-22 110.2 186 38.7
DCAR_017017 Daucus carota HOM05D003703 ORTHO05D004278 1.7e-22 110.2 171 42.7
Hma1.2p1_0183F.1_g080800 Hydrangea macrophylla HOM05D003703 ORTHO05D004278 1.7e-22 110.2 174 44.3
Solyc03g063550.1 Solanum lycopersicum HOM05D003703 ORTHO05D004278 1.7e-22 110.2 165 41.8
Glyma.03G143800 Glycine max HOM05D003703 ORTHO05D004278 2.2e-22 109.8 174 41.4
VMungo0720G2172 Vigna mungo HOM05D003703 ORTHO05D004278 2.2e-22 109.8 169 42.0
ECA236G4442 Erigeron canadensis HOM05D003703 ORTHO05D004278 2.8e-22 109.4 166 41.6
Actinidia22024 Actinidia chinensis HOM05D003703 ORTHO05D004278 3.7e-22 109.0 160 43.1
Carub.0006s0568 Capsella rubella HOM05D003703 ORTHO05D004278 3.7e-22 109.0 195 40.0
Migut.J01826 Erythranthe guttata HOM05D003703 ORTHO05D004278 3.7e-22 109.0 174 40.8
Sed0013585 Sechium edule HOM05D003703 ORTHO05D004278 4.8e-22 108.6 161 42.2
TPR.G18214 Trifolium pratense HOM05D003703 ORTHO05D004278 6.3e-22 108.2 176 40.9
MBI01_g36100_MAGBIO Magnolia biondii HOM05D003703 ORTHO05D004278 1.1e-21 107.5 170 38.8
Lj5g0003065 Lotus japonicus HOM05D003703 ORTHO05D004278 1.8e-21 106.7 166 39.2
Cfa020181 Carpinus fangiana HOM05D003703 ORTHO05D004278 2.4e-21 106.3 180 38.9
PGR142G3046 Punica granatum HOM05D003703 ORTHO05D004278 2.4e-21 106.3 182 39.0
Eucgr.K01832 Eucalyptus grandis HOM05D003703 ORTHO05D004278 3.1e-21 105.9 182 39.6
CANSAT64G0621 Cannabis sativa HOM05D003703 ORTHO05D004278 5.3e-21 105.1 205 37.6
Dinv24085 Davidia involucrata HOM05D001227 ORTHO05D001082 5.3e-21 105.1 187 39.0
SalBow1G5050 Salvia bowleyana HOM05D003703 ORTHO05D004278 5.3e-21 105.1 170 41.2
Lju124C28G5 Lonicera japonica HOM05D003703 ORTHO05D004278 7.0e-21 104.8 167 41.9
MSTRG.19899 Avicennia marina HOM05D003703 ORTHO05D004278 1.6e-20 103.6 178 37.6
MD12G1058500 Malus domestica HOM05D003703 ORTHO05D004278 1.6e-20 103.6 182 37.4
BcaC06g32394 Brassica carinata HOM05D003703 ORTHO05D004278 2.0e-20 103.2 191 39.8
BolC9t59739H Brassica oleracea HOM05D003703 ORTHO05D004278 2.0e-20 103.2 191 39.8
C09p69970 Brassica napus HOM05D003703 ORTHO05D004278 2.6e-20 102.8 192 39.6
ClCG10G017430 Citrullus lanatus HOM05D003703 ORTHO05D004278 3.5e-20 102.4 164 40.9
Aqoxy2G00073 Aquilegia oxysepala HOM05D003703 ORTHO05D004278 4.5e-20 102.1 181 34.3
SalBow6G1024 Salvia bowleyana HOM05D003703 ORTHO05D004278 5.9e-20 101.7 162 41.4
SalBow6G3273 Salvia bowleyana HOM05D003703 ORTHO05D004278 5.9e-20 101.7 162 41.4
Prupe.7G075500 Prunus persica HOM05D003703 ORTHO05D004278 1.3e-19 100.5 180 39.4
SGA_v2.0_scaffold94G28431 Striga asiatica HOM05D003703 ORTHO05D004278 2.2e-19 99.8 181 39.2
HanXRQChr13g0389341 Helianthus annuus HOM05D003703 ORTHO05D004278 2.9e-19 99.4 169 40.8
SalBow1G5631 Salvia bowleyana HOM05D003703 ORTHO05D004278 3.8e-19 99.0 150 42.7
TWI53G0257 Tripterygium wilfordii HOM05D003703 ORTHO05D004278 3.8e-19 99.0 177 42.4
MSTRG.10837 Avicennia marina HOM05D003703 ORTHO05D004278 6.5e-19 98.2 177 39.0
PSO675G1999 Papaver somniferum HOM05D003703 ORTHO05D004278 6.5e-19 98.2 190 34.7
Psat6g128520 Pisum sativum HOM05D003703 ORTHO05D004278 6.5e-19 98.2 174 39.7
Sopen03g016210 Solanum pennellii HOM05D003703 ORTHO05D004278 6.5e-19 98.2 114 49.1
Medtr1g053900 Medicago truncatula HOM05D003703 ORTHO05D004278 8.5e-19 97.8 174 39.1
TPR.G27747 Trifolium pratense HOM05D003703 ORTHO05D004278 8.5e-19 97.8 180 37.2
TAR369G1018 Trochodendron aralioides HOM05D003703 ORTHO05D004278 1.5e-18 97.1 179 36.9
EL10Ac3g06932 Beta vulgaris HOM05D003703 ORTHO05D004278 2.5e-18 96.3 144 38.9
Haze_19973 Corylus avellana HOM05D003703 ORTHO05D004278 2.5e-18 96.3 128 45.3
Lalb_Chr07g0188981 Lupinus albus HOM05D003703 ORTHO05D004278 7.2e-18 94.7 184 37.5
ECA248G0990 Erigeron canadensis HOM05D003703 ORTHO05D004278 1.2e-17 94.0 173 38.2
AUR62024314 Chenopodium quinoa HOM05D003703 ORTHO05D004278 3.6e-17 92.4 152 36.2
CsaV3_3G038930 Cucumis sativus L. HOM05D003703 ORTHO05D004278 4.7e-17 92.0 160 39.4
SHI16104 Sapria himalayana HOM05D003703 ORTHO05D004278 1.0e-16 90.9 148 43.2
Ah.04g152400 Amaranthus hybridus HOM05D003703 ORTHO05D004278 1.4e-16 90.5 148 38.5
DCAR_019841 Daucus carota HOM05D003703 ORTHO05D004278 2.6e-15 86.3 109 48.6
PSO339G4803 Papaver somniferum HOM05D003703 ORTHO05D004278 1.1e-13 80.9 155 36.8
Sc13g0002220 Simmondsia chinensis HOM05D003703 ORTHO05D004278 1.4e-13 80.5 170 38.2
Ca_25700_v3 Cicer arietinum L. HOM05D003703 ORTHO05D004278 1.8e-13 80.1 110 45.5
PSO063G6729 Papaver somniferum HOM05D003703 ORTHO05D004278 4.1e-13 79.0 134 37.3
PSO017G5564 Papaver somniferum HOM05D003703 ORTHO05D004278 3.5e-12 75.9 135 37.0
Sc25g0005120 Simmondsia chinensis HOM05D003703 ORTHO05D004278 3.5e-12 75.9 101 43.6
Eucgr.A02445 Eucalyptus grandis HOM05D003703 ORTHO05D004278 4.5e-12 75.5 170 37.1
CDE05G1581 Ceratophyllum demersum HOM05D003703 ORTHO05D004278 2.9e-11 72.8 155 31.6
Aa31sc24G60 Aethionema arabicum HOM05D003703 ORTHO05D004278 1.6e-09 67.0 76 51.3
CDE02G1004 Ceratophyllum demersum HOM05D003703 ORTHO05D004278 4.0e-08 62.4 155 28.4
Gohir.A04G052101 Gossypium hirsutum HOM05D003703 ORTHO05D004278 1.2e-07 60.8 72 44.4
Sc19g0006980 Simmondsia chinensis HOM05D003703 ORTHO05D004278 1.2e-07 60.8 71 49.3
Carub.0004s2450 Capsella rubella HOM05D003703 ORTHO05D004278 3.4e-07 59.3 154 35.1
MELO3C009637.2 Cucumis melo HOM05D003703 ORTHO05D004278 1.7e-06 57.0 113 31.9
Os09g0279200 Oryza sativa ssp. japonica HOM05D003703 ORTHO05D004278 2.8e-06 56.2 63 47.6


User provided reference genes

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