Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g08282 Brassica carinata HOM05D004474 ORTHO05D005538 1.7e-160 569.3 299 100.0
BcaC02g09981 Brassica carinata HOM05D004474 ORTHO05D005538 5.6e-151 537.7 303 95.0
BolC4t24999H Brassica oleracea HOM05D004474 ORTHO05D005538 5.6e-151 537.7 303 95.0
C04p34370 Brassica napus HOM05D004474 ORTHO05D005538 3.6e-150 535.0 303 94.4
A04p02790 Brassica napus HOM05D004474 ORTHO05D005538 1.5e-148 529.6 303 94.4
BraA04t16003Z Brassica rapa HOM05D004474 ORTHO05D005538 3.4e-148 528.5 303 94.4
Thhalv10006122m.g Eutrema salsugineum HOM05D004474 ORTHO05D005538 8.3e-139 497.3 306 86.9
AL5G39660 Arabidopsis lyrata HOM05D004474 ORTHO05D005538 1.6e-137 493.0 309 86.4
CARHR168330 Cardamine hirsuta HOM05D004474 ORTHO05D005538 3.0e-136 488.8 306 84.3
AT3G58010 Arabidopsis thaliana HOM05D004474 ORTHO05D005538 1.5e-135 486.5 309 84.5
Carub.0005s2485 Capsella rubella HOM05D004474 ORTHO05D005538 1.4e-133 479.9 311 83.0
Sp5g04710 Schrenkiella parvula HOM05D004474 ORTHO05D005538 5.2e-133 478.0 311 83.9
Aa31LG10G12710 Aethionema arabicum HOM05D004474 ORTHO05D005538 4.6e-121 438.3 303 76.2
THA.LOC104802541 Tarenaya hassleriana HOM05D004474 ORTHO05D005538 1.6e-113 413.3 312 73.4
Thhalv10017981m.g Eutrema salsugineum HOM05D004474 ORTHO05D005538 3.9e-112 408.7 296 73.3
AL4G40500 Arabidopsis lyrata HOM05D004474 ORTHO05D005538 1.1e-111 407.1 300 72.7
CARHR137190 Cardamine hirsuta HOM05D004474 ORTHO05D005538 1.9e-111 406.4 296 72.3
Sp4g24340 Schrenkiella parvula HOM05D004474 ORTHO05D005538 1.9e-111 406.4 295 72.9
AT2G42130 Arabidopsis thaliana HOM05D004474 ORTHO05D005538 4.3e-111 405.2 297 73.1
Carub.0004s2447 Capsella rubella HOM05D004474 ORTHO05D005538 6.9e-109 397.9 295 71.9
Aa31LG1G24090 Aethionema arabicum HOM05D004474 ORTHO05D005538 9.0e-109 397.5 300 70.3
BraA05t19266Z Brassica rapa HOM05D004474 ORTHO05D005538 5.8e-108 394.8 302 70.5
BcaC02g12461 Brassica carinata HOM05D004474 ORTHO05D005538 1.4e-106 390.2 300 70.7
BolC4t21967H Brassica oleracea HOM05D004474 ORTHO05D005538 1.4e-106 390.2 300 70.7
A05p02740 Brassica napus HOM05D004474 ORTHO05D005538 2.4e-106 389.4 302 70.5
C04p03280 Brassica napus HOM05D004474 ORTHO05D005538 7.9e-105 384.4 301 69.8
BcaNung04406 Brassica carinata HOM05D004474 ORTHO05D005538 4.3e-103 378.6 300 67.7
Cfa020166 Carpinus fangiana HOM05D004474 ORTHO05D005538 2.6e-100 369.4 304 64.5
QL07p023712 Quercus lobata HOM05D004474 ORTHO05D005538 2.2e-99 366.3 294 63.6
Atru.chr8.1110 Acer truncatum HOM05D004474 ORTHO05D005538 4.9e-99 365.2 299 61.9
Haze_19987 Corylus avellana HOM05D004474 ORTHO05D005538 4.9e-99 365.2 304 64.1
arahy.Tifrunner.gnm1.ann1.Q7TVYL Arachis hypogaea HOM05D004474 ORTHO05D005538 5.5e-98 361.7 304 63.5
COL.COLO4_33985 Corchorus olitorius HOM05D004474 ORTHO05D005538 5.5e-98 361.7 303 62.4
arahy.Tifrunner.gnm1.ann1.I8NV4T Arachis hypogaea HOM05D004474 ORTHO05D005538 7.1e-98 361.3 304 63.2
CiPaw.10G026600 Carya illinoinensis HOM05D004474 ORTHO05D005538 2.1e-97 359.8 307 62.2
CsaV3_3G038850 Cucumis sativus L. HOM05D004474 ORTHO05D005538 3.5e-97 359.0 306 61.1
Prupe.7G076700 Prunus persica HOM05D004474 ORTHO05D005538 3.5e-97 359.0 259 67.2
Glyma.02G173600 Glycine max HOM05D004474 ORTHO05D005538 1.0e-96 357.5 292 62.7
VMungo0720G2191 Vigna mungo HOM05D004474 ORTHO05D005538 1.0e-96 357.5 289 64.4
Ciclev10012319m.g Citrus clementina HOM05D004474 ORTHO05D005538 1.8e-96 356.7 296 62.2
Manes.09G035300 Manihot esculenta HOM05D004474 ORTHO05D005538 1.8e-96 356.7 300 61.7
Phvul.007G259700 Phaseolus vulgaris HOM05D004474 ORTHO05D005538 2.3e-96 356.3 289 63.7
BcaB04g18512 Brassica carinata HOM05D004474 ORTHO05D005538 3.0e-96 355.9 267 76.0
Gohir.D09G124000 Gossypium hirsutum HOM05D004474 ORTHO05D005538 3.9e-96 355.5 301 62.1
Gorai.006G142800 Gossypium raimondii HOM05D004474 ORTHO05D005538 3.9e-96 355.5 301 62.1
Sed0015879 Sechium edule HOM05D004474 ORTHO05D005538 6.7e-96 354.8 301 60.8
Cpa.g.sc85.68 Carica papaya HOM05D004474 ORTHO05D005538 1.1e-95 354.0 308 62.0
Gohir.A09G128000 Gossypium hirsutum HOM05D004474 ORTHO05D005538 1.1e-95 354.0 301 61.8
THA.LOC104819884 Tarenaya hassleriana HOM05D004474 ORTHO05D005538 1.1e-95 354.0 285 65.3
Potri.016G045900 Populus trichocarpa HOM05D004474 ORTHO05D005538 3.3e-95 352.4 306 61.4
CANSAT64G2813 Cannabis sativa HOM05D004474 ORTHO05D005538 9.7e-95 350.9 304 61.5
FAN05G0702 Fragaria x ananassa HOM05D004474 ORTHO05D005538 9.7e-95 350.9 259 65.3
Dinv14299 Davidia involucrata HOM05D004474 ORTHO05D005538 1.3e-94 350.5 256 66.8
ClCG10G017510 Citrullus lanatus HOM05D004474 ORTHO05D005538 1.6e-94 350.1 313 61.0
Lj5g0007104 Lotus japonicus HOM05D004474 ORTHO05D005538 1.6e-94 350.1 296 63.9
CiPaw.09G030400 Carya illinoinensis HOM05D004474 ORTHO05D005538 2.8e-94 349.4 296 62.2
FvH4_6g22380 Fragaria vesca HOM05D004474 ORTHO05D005538 3.7e-94 349.0 282 61.7
Hma1.2p1_0676F.1_g201960 Hydrangea macrophylla HOM05D004474 ORTHO05D005538 1.4e-93 347.1 244 68.4
Ca_12079_v3 Cicer arietinum L. HOM05D004474 ORTHO05D005538 1.8e-93 346.7 259 68.0
Lalb_Chr21g0316311 Lupinus albus HOM05D004474 ORTHO05D005538 2.4e-93 346.3 282 63.1
Thecc.05G171200 Theobroma cacao HOM05D004474 ORTHO05D005538 2.4e-93 346.3 302 59.6
TPR.G40276 Trifolium pratense HOM05D004474 ORTHO05D005538 3.1e-93 345.9 297 60.6
MD14G1058000 Malus domestica HOM05D004474 ORTHO05D005538 5.3e-93 345.1 252 65.5
DCAR_013545 Daucus carota HOM05D004474 ORTHO05D005538 6.9e-93 344.7 285 60.4
Medtr1g054070 Medicago truncatula HOM05D004474 ORTHO05D005538 1.2e-92 344.0 298 60.4
PSO384G2014 Papaver somniferum HOM05D004474 ORTHO05D005538 7.7e-92 341.3 257 65.4
Duzib093G0660 Durio zibethinus HOM05D004474 ORTHO05D005538 1.0e-91 340.9 258 65.1
ECA236G1848 Erigeron canadensis HOM05D004474 ORTHO05D005538 1.0e-91 340.9 277 61.4
BcaB08g34564 Brassica carinata HOM05D004474 ORTHO05D005538 1.7e-91 340.1 223 82.5
Dinv24073 Davidia involucrata HOM05D004474 ORTHO05D005538 2.2e-91 339.7 314 58.0
MD12G1057400 Malus domestica HOM05D004474 ORTHO05D005538 2.2e-91 339.7 252 64.7
PSO339G4529 Papaver somniferum HOM05D004474 ORTHO05D005538 2.9e-91 339.3 300 59.0
MBI04_g33963_MAGBIO Magnolia biondii HOM05D004474 ORTHO05D005538 5.0e-91 338.6 256 64.5
Lsat_1_v5_gn_8_75341 Lactuca sativa HOM05D004474 ORTHO05D005538 6.5e-91 338.2 286 61.5
Sabra16G0050000 Salix brachista HOM05D004474 ORTHO05D005538 6.5e-91 338.2 328 57.3
RcHm_v2.0_Chr3g0479711 Rosa chinensis HOM05D004474 ORTHO05D005538 8.5e-91 337.8 282 60.6
HanXRQChr06g0176171 Helianthus annuus HOM05D004474 ORTHO05D005538 1.4e-90 337.0 283 61.5
Migut.J01832 Erythranthe guttata HOM05D004474 ORTHO05D005538 1.9e-90 336.7 296 60.5
MSTRG.10843 Avicennia marina HOM05D004474 ORTHO05D005538 2.5e-90 336.3 255 65.9
Psat0s4417g0040 Pisum sativum HOM05D004474 ORTHO05D005538 3.2e-90 335.9 259 66.0
MELO3C009628.2 Cucumis melo HOM05D004474 ORTHO05D005538 1.6e-89 333.6 279 62.0
SalBow1G5519 Salvia bowleyana HOM05D004474 ORTHO05D005538 1.6e-89 333.6 255 64.7
SGA_v2.0_scaffold274G46485 Striga asiatica HOM05D004474 ORTHO05D005538 4.6e-89 332.0 245 66.9
TAR633G0920 Trochodendron aralioides HOM05D004474 ORTHO05D005538 1.0e-88 330.9 252 65.5
PGR004G1518 Punica granatum HOM05D004474 ORTHO05D005538 1.4e-88 330.5 304 58.2
CSS0036713 Camellia sinensis var. sinensis HOM05D004474 ORTHO05D005538 1.8e-88 330.1 256 63.3
Oeu024481.1 Olea europaea HOM05D004474 ORTHO05D005538 1.8e-88 330.1 252 63.1
EL10Ac3g06918 Beta vulgaris HOM05D004474 ORTHO05D005538 5.1e-88 328.6 305 57.0
Peaxi162Scf00258g00522 Petunia axillaris HOM05D004474 ORTHO05D005538 5.1e-88 328.6 278 60.1
TAR636G3262 Trochodendron aralioides HOM05D004474 ORTHO05D005538 3.3e-87 325.9 255 65.5
Sopen03g015120 Solanum pennellii HOM05D004474 ORTHO05D005538 5.7e-87 325.1 274 59.5
Nitab4.5_0002488g0030 Nicotiana tabacum HOM05D004474 ORTHO05D005538 1.3e-86 323.9 288 59.7
Solyc03g062790.3 Solanum lycopersicum HOM05D004474 ORTHO05D005538 1.7e-86 323.6 274 59.1
Sabra06G0147300 Salix brachista HOM05D004474 ORTHO05D005538 2.2e-86 323.2 297 58.2
Rhsim04G0096800 Rhododendron simsii HOM05D004474 ORTHO05D005538 2.8e-86 322.8 297 57.2
RhsimUnG0212600 Rhododendron simsii HOM05D004474 ORTHO05D005538 2.8e-86 322.8 297 57.2
unitig_749.g14029 Utricularia gibba HOM05D004474 ORTHO05D005538 2.4e-85 319.7 277 59.2
Sc13g0002280 Simmondsia chinensis HOM05D004474 ORTHO05D005538 3.1e-85 319.3 236 65.7
Actinidia38580 Actinidia chinensis HOM05D004474 ORTHO05D005538 5.3e-85 318.5 256 61.7
CAN.G570.5 Capsicum annuum HOM05D004474 ORTHO05D005538 6.9e-85 318.2 266 60.5
Hund24791 Selenicereus undatus HOM05D004474 ORTHO05D005538 6.9e-85 318.2 330 51.5
GSVIVG01033499001 Vitis vinifera HOM05D004474 ORTHO05D005538 1.5e-84 317.0 236 65.3
Zm00001eb067150 Zea mays HOM05D004474 ORTHO05D005538 2.0e-84 316.6 277 56.7
Peaxi162Scf00480g00018 Petunia axillaris HOM05D004474 ORTHO05D005538 7.7e-84 314.7 295 56.6
HanXRQChr05g0132931 Helianthus annuus HOM05D004474 ORTHO05D005538 1.0e-83 314.3 303 57.1
Nn2g15677 Nelumbo nucifera HOM05D004474 ORTHO05D005538 1.3e-83 313.9 223 66.4
Nitab4.5_0007056g0010 Nicotiana tabacum HOM05D004474 ORTHO05D005538 1.9e-82 310.1 295 56.6
PGSC0003DMG401023672 Solanum tuberosum HOM05D004474 ORTHO05D005538 3.2e-82 309.3 273 58.2
Potri.006G192200 Populus trichocarpa HOM05D004474 ORTHO05D005538 6.1e-81 305.1 265 61.1
vmacro09118 Vaccinium macrocarpon HOM05D004474 ORTHO05D005538 7.9e-81 304.7 315 52.1
Cc06_g15950 Coffea canephora HOM05D004474 ORTHO05D005538 1.4e-80 303.9 236 61.0
TWI74G1538 Tripterygium wilfordii HOM05D004474 ORTHO05D005538 3.0e-80 302.8 292 55.8
Glyma.09G111700 Glycine max HOM05D004474 ORTHO05D005538 8.8e-80 301.2 232 66.4
Ah.04g152460 Amaranthus hybridus HOM05D004474 ORTHO05D005538 5.7e-79 298.5 265 58.9
Nitab4.5_0003600g0060 Nicotiana tabacum HOM05D004474 ORTHO05D005538 7.4e-79 298.1 287 56.4
SGA_v2.0_scaffold105G30490 Striga asiatica HOM05D004474 ORTHO05D005538 7.4e-79 298.1 293 51.5
Sopen10g031040 Solanum pennellii HOM05D004474 ORTHO05D005538 9.7e-79 297.7 241 60.6
Oeu033737.2 Olea europaea HOM05D004474 ORTHO05D005538 2.8e-78 296.2 367 46.0
Solyc10g080490.2 Solanum lycopersicum HOM05D004474 ORTHO05D005538 3.7e-78 295.8 241 60.2
Aqoxy2G00079 Aquilegia oxysepala HOM05D004474 ORTHO05D005538 4.8e-78 295.4 225 64.9
FAN02G3755 Fragaria x ananassa HOM05D004474 ORTHO05D005538 1.2e-76 290.8 271 56.5
CDE02G4436 Ceratophyllum demersum HOM05D004474 ORTHO05D005538 3.5e-76 289.3 255 60.4
Eucgr.A02451 Eucalyptus grandis HOM05D004474 ORTHO05D005538 4.5e-76 288.9 231 61.0
Hund19202 Selenicereus undatus HOM05D004474 ORTHO05D005538 5.9e-76 288.5 242 59.1
Oeu034264.1 Olea europaea HOM05D004474 ORTHO05D005538 1.7e-75 287.0 252 57.1
ATR0605G151 Amborella trichopoda HOM05D004474 ORTHO05D005538 1.1e-74 284.3 250 57.6
Manes.08G044700 Manihot esculenta HOM05D004474 ORTHO05D005538 5.5e-74 282.0 291 49.8
Zm00001eb433050 Zea mays HOM05D004474 ORTHO05D005538 2.1e-73 280.0 219 59.8
FAN09G2770 Fragaria x ananassa HOM05D004474 ORTHO05D005538 6.3e-70 268.5 330 47.0
FAN14G3363 Fragaria x ananassa HOM05D004474 ORTHO05D005538 6.3e-70 268.5 351 45.9
Lj2A366T55 Lonicera japonica HOM05D004474 ORTHO05D005538 8.2e-70 268.1 241 57.7
Nitab4.5_0000324g0040 Nicotiana tabacum HOM05D004474 ORTHO05D005538 4.2e-66 255.8 227 58.6
Actinidia17270 Actinidia chinensis HOM05D004474 ORTHO05D005538 2.2e-62 243.4 212 58.0
AUR62012033 Chenopodium quinoa HOM05D004474 ORTHO05D005538 1.6e-57 227.3 401 37.9
Mapoly0033s0063 Marchantia polymorpha HOM05D004474 ORTHO05D005538 1.6e-57 227.3 231 46.3
Mapoly0020s0060 Marchantia polymorpha HOM05D004474 ORTHO05D005538 1.5e-55 220.7 289 40.1
HPP92_002995 Vanilla planifolia HOM05D004474 ORTHO05D005538 4.8e-54 215.7 163 62.0
CAN.G128.40 Capsicum annuum HOM05D004474 ORTHO05D005538 7.0e-53 211.8 217 52.1
SMO351G0571 Selaginella moellendorffii HOM05D004474 ORTHO05D005538 1.0e-51 208.0 239 43.1
CBR_g20312 Chara braunii HOM05D004474 ORTHO05D005538 1.7e-51 207.2 237 44.3
AUR62015371 Chenopodium quinoa HOM05D004474 ORTHO05D005538 1.5e-50 204.1 256 45.7
Haze_19989 Corylus avellana HOM05D004474 ORTHO05D005538 2.5e-50 203.4 183 61.2
Oeu024482.1 Olea europaea HOM05D004474 ORTHO05D005538 1.3e-46 191.0 131 69.5
Duzib106G1296 Durio zibethinus HOM05D004474 ORTHO05D005538 7.8e-44 181.8 143 60.8
AagrBONN_evm.TU.Sc2ySwM_228.3345 Anthoceros agrestis HOM05D004474 ORTHO05D005538 8.6e-43 178.3 189 48.1
Lsat_1_v5_gn_2_74301 Lactuca sativa HOM05D004474 ORTHO05D005538 9.5e-34 148.3 109 64.2
Pp3c10_14100 Physcomitrium patens HOM05D004474 ORTHO05D005538 1.5e-26 124.4 129 49.6
Os04g0665800 Oryza sativa ssp. japonica HOM05D004474 ORTHO05D005538 2.7e-20 103.6 73 72.6
SEGI_00551 Sequoiadendron giganteum HOM05D004474 ORTHO05D005538 3.5e-20 103.2 107 46.7
Sc23g0004130 Simmondsia chinensis HOM05D004474 ORTHO05D005538 6.0e-20 102.4 79 62.0
Hund01181 Selenicereus undatus HOM05D009125 ORTHO05D000110 3.8e-14 83.2 74 48.6
C01p35130 Brassica napus HOM05D027121 ORTHO05D039971 1.9e-13 80.9 106 48.1
BcaC09g49569 Brassica carinata HOM05D027121 ORTHO05D094000 2.4e-13 80.5 106 48.1
Lsat_1_v5_gn_8_115961 Lactuca sativa HOM05D004474 ORTHO05D005538 1.6e-12 77.8 58 60.3
PGSC0003DMG400028004 Solanum tuberosum HOM05D004474 ORTHO05D005538 3.0e-11 73.6 73 52.1
CDE05G2704 Ceratophyllum demersum HOM05D004474 ORTHO05D005538 3.9e-11 73.2 184 34.2
Oeu054954.1 Olea europaea HOM05D004474 ORTHO05D005538 1.6e-09 67.8 52 61.5


User provided reference genes

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