Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g08238 Brassica carinata HOM05D004204 ORTHO05D005069 3.6e-130 468.4 262 100.0
Thhalv10006181m.g Eutrema salsugineum HOM05D004204 ORTHO05D005069 6.2e-130 467.6 262 99.6
BolC4t24946H Brassica oleracea HOM05D004204 ORTHO05D005069 1.4e-129 466.5 262 99.6
A07p24300 Brassica napus HOM05D004204 ORTHO05D005069 1.8e-129 466.1 262 99.6
BraA07t30073Z Brassica rapa HOM05D004204 ORTHO05D005069 1.8e-129 466.1 262 99.6
BcaC02g10026 Brassica carinata HOM05D004204 ORTHO05D005069 3.1e-129 465.3 262 99.2
C04p33790 Brassica napus HOM05D004204 ORTHO05D005069 4.0e-129 464.9 262 99.2
BcaB02g07513 Brassica carinata HOM05D004204 ORTHO05D005069 9.0e-129 463.8 262 99.2
BcaC08g44940 Brassica carinata HOM05D004204 ORTHO05D005069 9.0e-129 463.8 262 99.2
C06p25680 Brassica napus HOM05D004204 ORTHO05D005069 9.0e-129 463.8 262 99.2
BolC6t37731H Brassica oleracea HOM05D004204 ORTHO05D005069 9.0e-129 463.8 262 99.2
A09p51280 Brassica napus HOM05D004204 ORTHO05D005069 2.0e-128 462.6 262 98.9
BraA09t40569Z Brassica rapa HOM05D004204 ORTHO05D005069 2.0e-128 462.6 262 98.9
BcaC07g40222 Brassica carinata HOM05D004204 ORTHO05D005069 3.4e-128 461.8 263 95.8
CARHR169110 Cardamine hirsuta HOM05D004204 ORTHO05D005069 3.4e-128 461.8 262 98.5
Sp5g04120 Schrenkiella parvula HOM05D004204 ORTHO05D005069 5.8e-128 461.1 262 98.1
BcaC07g40292 Brassica carinata HOM05D004204 ORTHO05D005069 9.9e-128 460.3 263 98.9
C08p34060 Brassica napus HOM05D004204 ORTHO05D005069 9.9e-128 460.3 263 98.9
BolC8t51004H Brassica oleracea HOM05D004204 ORTHO05D005069 9.9e-128 460.3 263 98.9
Carub.0005s2552 Capsella rubella HOM05D004204 ORTHO05D005069 6.4e-127 457.6 262 97.7
AL5G40500 Arabidopsis lyrata HOM05D004204 ORTHO05D005069 3.2e-126 455.3 262 96.9
AT3G58730 Arabidopsis thaliana HOM05D004204 ORTHO05D005069 1.6e-125 453.0 262 93.1
Aa31LG10G13340 Aethionema arabicum HOM05D004204 ORTHO05D005069 3.0e-124 448.7 262 95.4
THA.LOC104803084 Tarenaya hassleriana HOM05D004204 ORTHO05D005069 3.9e-116 421.8 262 85.5
THA.LOC104824109 Tarenaya hassleriana HOM05D004204 ORTHO05D005069 3.3e-115 418.7 262 85.1
ClCG09G022270 Citrullus lanatus HOM05D004204 ORTHO05D005069 4.9e-111 404.8 262 80.5
CsaV3_6G037950 Cucumis sativus L. HOM05D004204 ORTHO05D005935 1.4e-110 403.3 262 80.2
Peaxi162Scf00402g00091 Petunia axillaris HOM05D004204 ORTHO05D005069 3.2e-110 402.1 262 80.5
Gohir.A05G377700 Gossypium hirsutum HOM05D004204 ORTHO05D005069 4.2e-110 401.7 262 79.8
Gohir.D04G038000 Gossypium hirsutum HOM05D004204 ORTHO05D005069 4.2e-110 401.7 262 79.8
Gorai.012G042900 Gossypium raimondii HOM05D004204 ORTHO05D005069 4.2e-110 401.7 262 79.8
MELO3C014458.2 Cucumis melo HOM05D004204 ORTHO05D005069 5.5e-110 401.4 262 79.8
Duzib187G0241 Durio zibethinus HOM05D004204 ORTHO05D005069 5.5e-110 401.4 262 80.5
MBI05_g35455_MAGBIO Magnolia biondii HOM05D004204 ORTHO05D005069 5.5e-110 401.4 262 80.9
Sed0024868 Sechium edule HOM05D004204 ORTHO05D005069 5.5e-110 401.4 262 79.8
Thecc.01G158400 Theobroma cacao HOM05D004204 ORTHO05D005069 9.3e-110 400.6 262 80.5
Sed0017703 Sechium edule HOM05D004204 ORTHO05D005069 1.2e-109 400.2 262 78.6
Cfa021389 Carpinus fangiana HOM05D003004 ORTHO05D003860 1.6e-109 399.8 262 80.2
Haze_13468 Corylus avellana HOM05D004204 ORTHO05D005069 1.6e-109 399.8 262 80.2
CSS0017946 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 2.1e-109 399.4 262 79.4
Gohir.D11G063900 Gossypium hirsutum HOM05D004204 ORTHO05D005069 3.5e-109 398.7 262 80.2
Gorai.007G069100 Gossypium raimondii HOM05D004204 ORTHO05D005069 3.5e-109 398.7 262 80.2
CANSAT64G2098 Cannabis sativa HOM05D004204 ORTHO05D005069 4.6e-109 398.3 262 80.9
Duzib147G0786 Durio zibethinus HOM05D004204 ORTHO05D005069 6.0e-109 397.9 262 79.0
FAN09G4615 Fragaria x ananassa HOM05D004204 ORTHO05D005069 6.0e-109 397.9 262 79.0
Sed0014187 Sechium edule HOM05D004204 ORTHO05D005069 6.0e-109 397.9 262 78.6
Atru.chr6.3559 Acer truncatum HOM05D004204 ORTHO05D005069 7.9e-109 397.5 262 80.5
Gohir.A11G059800 Gossypium hirsutum HOM05D004204 ORTHO05D005069 1.0e-108 397.1 262 79.8
FvH4_6g37711 Fragaria vesca HOM05D004204 ORTHO05D005069 1.3e-108 396.7 262 78.6
FAN02G0573 Fragaria x ananassa HOM05D004204 ORTHO05D005069 1.3e-108 396.7 262 78.6
Nn6g34434 Nelumbo nucifera HOM05D004204 ORTHO05D005069 1.3e-108 396.7 262 79.4
COL.COLO4_33705 Corchorus olitorius HOM05D004204 ORTHO05D005069 1.8e-108 396.4 262 79.0
Duzib264G0780 Durio zibethinus HOM05D004204 ORTHO05D005069 1.8e-108 396.4 262 79.0
Peaxi162Scf00245g00083 Petunia axillaris HOM05D004204 ORTHO05D005069 1.8e-108 396.4 262 80.2
Cpa.g.sc50.63 Carica papaya HOM05D004204 ORTHO05D005069 2.3e-108 396.0 262 79.0
Prupe.3G169600 Prunus persica HOM05D004204 ORTHO05D005069 3.0e-108 395.6 262 78.2
TWI60G0387 Tripterygium wilfordii HOM05D004204 ORTHO05D005069 3.0e-108 395.6 262 79.4
CSS0030406 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 3.9e-108 395.2 262 78.6
CAN.G129.55 Capsicum annuum HOM05D004204 ORTHO05D005069 3.9e-108 395.2 262 79.4
Eucgr.A01954 Eucalyptus grandis HOM05D004204 ORTHO05D005069 5.1e-108 394.8 262 79.8
Manes.07G088000 Manihot esculenta HOM05D004204 ORTHO05D005069 5.1e-108 394.8 262 78.6
RcHm_v2.0_Chr2g0150801 Rosa chinensis HOM05D004204 ORTHO05D005069 6.7e-108 394.4 262 78.2
PGR042G1561 Punica granatum HOM05D004204 ORTHO05D005069 1.1e-107 393.7 262 79.4
CAN.G342.2 Capsicum annuum HOM05D004204 ORTHO05D005069 1.5e-107 393.3 262 78.6
CiPaw.03G195700 Carya illinoinensis HOM05D004204 ORTHO05D005069 1.5e-107 393.3 262 78.2
Dinv32805 Davidia involucrata HOM05D004204 ORTHO05D005069 1.5e-107 393.3 262 79.8
Nitab4.5_0010277g0010 Nicotiana tabacum HOM05D004204 ORTHO05D005069 1.9e-107 392.9 262 79.0
PGR042G0881 Punica granatum HOM05D004204 ORTHO05D005069 1.9e-107 392.9 262 79.0
QL08p043409 Quercus lobata HOM05D004204 ORTHO05D005069 1.9e-107 392.9 261 78.5
Ah.08g218830 Amaranthus hybridus HOM05D004204 ORTHO05D005069 2.5e-107 392.5 262 79.0
TAR627G1067 Trochodendron aralioides HOM05D004204 ORTHO05D005069 2.5e-107 392.5 262 79.8
Aqoxy1G01036 Aquilegia oxysepala HOM05D004204 ORTHO05D005069 4.3e-107 391.7 262 78.6
PSO017G5144 Papaver somniferum HOM05D004204 ORTHO05D005069 4.3e-107 391.7 262 79.8
PSO478G2024 Papaver somniferum HOM05D004204 ORTHO05D005069 4.3e-107 391.7 262 79.8
Nitab4.5_0000050g0140 Nicotiana tabacum HOM05D004204 ORTHO05D005069 5.6e-107 391.3 262 78.6
Rhsim09G0208200 Rhododendron simsii HOM05D004204 ORTHO05D005069 5.6e-107 391.3 262 79.0
SGA_v2.0_scaffold75G25035 Striga asiatica HOM05D004204 ORTHO05D005069 5.6e-107 391.3 264 79.5
DCAR_008869 Daucus carota HOM05D004204 ORTHO05D005069 7.4e-107 391.0 262 77.1
Nitab4.5_0000468g0140 Nicotiana tabacum HOM05D004204 ORTHO05D005069 7.4e-107 391.0 262 77.9
Migut.J00093 Erythranthe guttata HOM05D004204 ORTHO05D005069 9.6e-107 390.6 262 79.4
arahy.Tifrunner.gnm1.ann1.T687E0 Arachis hypogaea HOM05D004204 ORTHO05D005069 1.3e-106 390.2 263 78.3
EL10Ac7g17969 Beta vulgaris HOM05D004204 ORTHO05D005069 1.3e-106 390.2 262 78.6
Nitab4.5_0002319g0030 Nicotiana tabacum HOM05D004204 ORTHO05D005069 1.3e-106 390.2 262 77.9
Potri.001G331800 Populus trichocarpa HOM05D004204 ORTHO05D005069 1.6e-106 389.8 262 79.0
unitig_578.g16445 Utricularia gibba HOM05D004204 ORTHO05D005069 1.6e-106 389.8 262 77.5
arahy.Tifrunner.gnm1.ann1.ZZ9MYP Arachis hypogaea HOM05D004204 ORTHO05D005069 2.1e-106 389.4 263 77.9
unitig_8.g4657 Utricularia gibba HOM05D004204 ORTHO05D005069 3.7e-106 388.7 262 77.5
MSTRG.12090 Avicennia marina HOM05D004204 ORTHO05D005069 6.2e-106 387.9 262 77.5
AUR62001174 Chenopodium quinoa HOM05D004204 ORTHO05D005069 6.2e-106 387.9 262 77.1
Eucgr.K01191 Eucalyptus grandis HOM05D004204 ORTHO05D005069 8.2e-106 387.5 262 77.1
SalBow8G0221 Salvia bowleyana HOM05D004204 ORTHO05D005069 8.2e-106 387.5 262 78.2
PGSC0003DMG400028976 Solanum tuberosum HOM05D004204 ORTHO05D005069 8.2e-106 387.5 262 78.6
Cfa003191 Carpinus fangiana HOM05D004204 ORTHO05D005069 1.1e-105 387.1 262 78.2
Sopen01g033260 Solanum pennellii HOM05D004204 ORTHO05D005069 1.8e-105 386.3 262 78.6
arahy.Tifrunner.gnm1.ann1.MW62YC Arachis hypogaea HOM05D004204 ORTHO05D005069 3.1e-105 385.6 263 77.6
Cc05_g09150 Coffea canephora HOM05D004204 ORTHO05D005069 3.1e-105 385.6 262 76.7
Lalb_Chr01g0012081 Lupinus albus HOM05D004204 ORTHO05D005069 4.0e-105 385.2 263 77.2
Solyc01g073690.2 Solanum lycopersicum HOM05D004204 ORTHO05D005069 4.0e-105 385.2 262 78.2
Haze_25816 Corylus avellana HOM05D004204 ORTHO05D005069 5.3e-105 384.8 262 77.5
Manes.11G098900 Manihot esculenta HOM05D004204 ORTHO05D005069 9.0e-105 384.0 262 76.7
Ciclev10009240m.g Citrus clementina HOM05D004204 ORTHO05D005069 1.2e-104 383.6 259 78.0
Oeu032121.1 Olea europaea HOM05D004204 ORTHO05D005069 1.2e-104 383.6 262 76.7
Sc17g0001890 Simmondsia chinensis HOM05D004204 ORTHO05D005069 1.2e-104 383.6 262 76.3
Ah.02g131680 Amaranthus hybridus HOM05D004204 ORTHO05D005069 3.4e-104 382.1 262 76.7
TAR626G0791 Trochodendron aralioides HOM05D004204 ORTHO05D005069 3.4e-104 382.1 262 77.9
ATR1096G113 Amborella trichopoda HOM05D004204 ORTHO05D005069 4.5e-104 381.7 262 74.8
AUR62022151 Chenopodium quinoa HOM05D004204 ORTHO05D005069 1.0e-103 380.6 251 78.1
ECA240G3934 Erigeron canadensis HOM05D004204 ORTHO05D005069 1.0e-103 380.6 262 76.7
SGA_v2.0_scaffold49G18257 Striga asiatica HOM05D004204 ORTHO05D005069 1.0e-103 380.6 264 78.0
CiPaw.04G158700 Carya illinoinensis HOM05D004204 ORTHO05D005069 1.3e-103 380.2 262 77.1
HPP92_016375 Vanilla planifolia HOM05D004204 ORTHO05D005069 1.3e-103 380.2 264 76.9
HanXRQChr10g0291131 Helianthus annuus HOM05D004204 ORTHO05D005069 1.4e-102 376.7 262 76.0
HanXRQChr01g0018251 Helianthus annuus HOM05D004204 ORTHO05D005069 5.5e-102 374.8 262 74.8
Zm00001eb068780 Zea mays HOM05D004204 ORTHO05D005069 7.1e-102 374.4 270 75.9
Medtr4g007030 Medicago truncatula HOM05D004204 ORTHO05D005069 2.1e-101 372.9 263 75.7
Os04g0643100 Oryza sativa ssp. japonica HOM05D004204 ORTHO05D005069 4.6e-101 371.7 270 74.1
MD09G1156500 Malus domestica HOM05D004204 ORTHO05D005069 7.9e-101 370.9 247 79.8
Lsat_1_v5_gn_1_65961 Lactuca sativa HOM05D004204 ORTHO05D005069 1.0e-100 370.5 262 76.0
Sabra16G0212800 Salix brachista HOM05D004204 ORTHO05D005069 2.3e-100 369.4 256 75.8
MD17G1143000 Malus domestica HOM05D004204 ORTHO05D005069 8.7e-100 367.5 247 78.9
arahy.Tifrunner.gnm1.ann1.2FMA0R Arachis hypogaea HOM05D004204 ORTHO05D005069 2.5e-99 365.9 246 78.5
CDE02G2648 Ceratophyllum demersum HOM05D004204 ORTHO05D001497 4.3e-99 365.2 262 74.4
DCAR_017765 Daucus carota HOM05D004204 ORTHO05D005069 2.8e-98 362.5 262 74.0
Glyma.08G218500 Glycine max HOM05D004204 ORTHO05D005069 3.7e-98 362.1 263 74.9
Glyma.07G023400 Glycine max HOM05D004204 ORTHO05D005069 4.8e-98 361.7 263 74.5
Lj3g0014023 Lotus japonicus HOM05D004204 ORTHO05D005069 1.4e-97 360.1 263 74.1
Phvul.010G161000 Phaseolus vulgaris HOM05D004204 ORTHO05D005069 4.1e-97 358.6 263 74.5
VMungo0331G1952 Vigna mungo HOM05D004204 ORTHO05D005069 9.0e-97 357.5 263 74.1
Ca_20545_v3 Cicer arietinum L. HOM05D004204 ORTHO05D005069 8.5e-95 350.9 248 75.4
Lj9A643T35 Lonicera japonica HOM05D004204 ORTHO05D005069 3.0e-92 342.4 262 71.8
HPP92_004259 Vanilla planifolia HOM05D004204 ORTHO05D005069 3.9e-92 342.0 249 71.9
Hma1.2p1_0178F.1_g078220 Hydrangea macrophylla HOM05D004204 ORTHO05D005069 2.5e-91 339.3 262 70.2
ECA246G4647 Erigeron canadensis HOM05D004204 ORTHO05D005069 4.3e-91 338.6 263 70.7
HanXRQChr17g0544781 Helianthus annuus HOM05D004204 ORTHO05D005069 3.7e-90 335.5 264 70.1
vmacro10147 Vaccinium macrocarpon HOM05D004204 ORTHO05D005069 4.8e-90 335.1 214 86.4
Lsat_1_v5_gn_3_51340 Lactuca sativa HOM05D004204 ORTHO05D005069 1.8e-89 333.2 218 80.3
Pp3c6_9410 Physcomitrium patens HOM05D004204 ORTHO05D005069 1.0e-87 327.4 238 70.2
HPP92_004237 Vanilla planifolia HOM05D004204 ORTHO05D005069 1.0e-87 327.4 235 72.8
TPR.G23089 Trifolium pratense HOM05D004204 ORTHO05D005069 2.2e-87 326.2 241 73.4
SEGI_15623 Sequoiadendron giganteum HOM05D004204 ORTHO05D005069 2.5e-86 322.8 210 80.0
Mapoly0105s0055 Marchantia polymorpha HOM05D004204 ORTHO05D005069 9.4e-86 320.9 226 73.0
BraA04t15968Z Brassica rapa HOM05D004204 ORTHO05D005069 6.1e-85 318.2 263 72.6
SMO228G0174 Selaginella moellendorffii HOM05D004204 ORTHO05D005069 1.8e-84 316.6 223 72.6
Pp3c27_320 Physcomitrium patens HOM05D004204 ORTHO05D005069 3.0e-84 315.8 242 66.9
CBR_g48799 Chara braunii HOM05D004204 ORTHO05D005069 2.8e-82 309.3 265 63.4
vmacro03162 Vaccinium macrocarpon HOM05D004204 ORTHO05D005069 6.3e-82 308.1 262 66.4
Zm00001eb414980 Zea mays HOM05D004204 ORTHO05D005069 2.3e-76 289.7 267 59.6
Pp3c27_340 Physcomitrium patens HOM05D004204 ORTHO05D005069 4.1e-73 278.9 232 60.3
AagrBONN_evm.TU.Sc2ySwM_117.1669 Anthoceros agrestis HOM05D004204 ORTHO05D005069 9.1e-73 277.7 220 64.1
CAN.G526.4 Capsicum annuum HOM05D004204 ORTHO05D005069 4.5e-72 275.4 249 63.1
Psat7g260080 Pisum sativum HOM05D004204 ORTHO05D005069 2.9e-71 272.7 204 71.6
CSS0036612 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 5.0e-71 271.9 249 62.2
Cre09.g405050 Chlamydomonas reinhardtii HOM05D004204 ORTHO05D005069 6.1e-69 265.0 208 67.3
Actinidia12827 Actinidia chinensis HOM05D004204 ORTHO05D005069 3.7e-66 255.8 247 58.3
Rhsim13G0091500 Rhododendron simsii HOM05D003786 ORTHO05D004375 1.4e-65 253.8 262 58.8
PRCOL_00004709 Prasinoderma coloniale HOM05D004204 ORTHO05D005069 5.9e-64 248.4 270 53.3
A04p02390 Brassica napus HOM05D004204 ORTHO05D005069 2.2e-63 246.5 138 97.8
MCO02G145 Micromonas commoda HOM05D004204 ORTHO05D005069 2.7e-61 239.6 209 60.3
CSS0013944 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 2.0e-51 206.8 234 55.1
Haze_27505 Corylus avellana HOM05D004204 ORTHO05D005069 2.2e-50 203.4 244 46.3
Cfa023614 Carpinus fangiana HOM05D004204 ORTHO05D005069 3.2e-49 199.5 245 48.2
CDE06G2512 Ceratophyllum demersum HOM05D004204 ORTHO05D005069 1.5e-46 190.7 130 73.1
Nn3g21015 Nelumbo nucifera HOM05D004204 ORTHO05D005069 1.2e-43 181.0 120 76.7
Actinidia07106 Actinidia chinensis HOM05D004204 ORTHO05D005069 3.2e-41 172.9 118 78.0
Oeu014265.1 Olea europaea HOM05D004204 ORTHO05D005069 3.5e-40 169.5 179 54.7
Hma1.2p1_3358F.1_g335580 Hydrangea macrophylla HOM05D004204 ORTHO05D005069 6.4e-34 148.7 192 47.4
CDE06G0458 Ceratophyllum demersum HOM05D004204 ORTHO05D005069 4.4e-27 125.9 127 55.9
PGSC0003DMG400031396 Solanum tuberosum HOM05D004204 ORTHO05D005069 3.7e-26 122.9 96 65.6
RcHm_v2.0_Chr2g0150691 Rosa chinensis HOM05D004204 ORTHO05D005069 1.3e-18 97.8 57 86.0


User provided reference genes

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