Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g08224 Brassica carinata HOM05D004131 ORTHO05D004778 7.9e-69 263.8 153 100.0
BraA04t15927Z Brassica rapa HOM05D004131 ORTHO05D004778 2.3e-31 139.4 159 66.0
A04p02020 Brassica napus HOM05D004131 ORTHO05D004778 4.3e-30 135.2 142 70.4
C04p32910 Brassica napus HOM05D004131 ORTHO05D004778 4.3e-30 135.2 142 70.4
Sp5g03340 Schrenkiella parvula HOM05D004131 ORTHO05D004778 5.6e-30 134.8 142 69.7
CARHR170140 Cardamine hirsuta HOM05D004131 ORTHO05D004778 1.6e-29 133.3 141 68.1
BcaB02g08209 Brassica carinata HOM05D004131 ORTHO05D004778 6.2e-29 131.3 136 71.3
AT3G59800 Arabidopsis thaliana HOM05D004131 ORTHO05D004778 1.4e-28 130.2 142 67.6
BcaC02g10087 Brassica carinata HOM05D004131 ORTHO05D004778 8.9e-28 127.5 151 66.2
Thhalv10006256m.g Eutrema salsugineum HOM05D004131 ORTHO05D004778 1.7e-26 123.2 142 66.9
Aa31LG10G14050 Aethionema arabicum HOM05D004131 ORTHO05D004778 4.1e-25 118.6 151 60.9
Sp4g25870 Schrenkiella parvula HOM05D004131 ORTHO05D004778 7.0e-25 117.9 157 58.6
CARHR138980 Cardamine hirsuta HOM05D004131 ORTHO05D004778 1.0e-23 114.0 161 57.1
BolC4t24854H Brassica oleracea HOM05D004131 ORTHO05D004778 6.6e-23 111.3 63 87.3
AL5G41850 Arabidopsis lyrata HOM05D004131 ORTHO05D004778 1.1e-22 110.5 144 61.1
BcaB02g08900 Brassica carinata HOM05D004131 ORTHO05D004778 2.5e-22 109.4 157 55.4
Carub.0004s2633 Capsella rubella HOM05D004131 ORTHO05D004778 1.6e-21 106.7 63 84.1
BolC4t22105H Brassica oleracea HOM05D004131 ORTHO05D004778 2.8e-21 105.9 62 82.3
BcaC02g12362 Brassica carinata HOM05D004131 ORTHO05D004778 8.1e-21 104.4 60 83.3
C04p04750 Brassica napus HOM05D004131 ORTHO05D004778 8.1e-21 104.4 60 83.3
THA.LOC104805841 Tarenaya hassleriana HOM05D004131 ORTHO05D004778 1.4e-20 103.6 151 55.6
AL4G42670 Arabidopsis lyrata HOM05D004131 ORTHO05D004778 4.0e-20 102.1 63 77.8
AT2G43795 Arabidopsis thaliana HOM05D004131 ORTHO05D004778 4.0e-20 102.1 63 79.4
TAR636G2398 Trochodendron aralioides HOM05D004131 ORTHO05D004778 6.8e-20 101.3 155 44.5
BcaB05g25112 Brassica carinata HOM05D004131 ORTHO05D004778 8.9e-20 100.9 125 64.8
THA.LOC104804159 Tarenaya hassleriana HOM05D004131 ORTHO05D004778 1.2e-19 100.5 61 78.7
BcaC07g40454 Brassica carinata HOM05D004131 ORTHO05D004778 1.5e-19 100.1 131 64.1
THA.LOC104802336 Tarenaya hassleriana HOM05D004131 ORTHO05D004778 1.5e-19 100.1 60 81.7
A05p04000 Brassica napus HOM05D004131 ORTHO05D004778 2.0e-19 99.8 61 82.0
BraA05t19388Z Brassica rapa HOM05D004131 ORTHO05D004778 2.0e-19 99.8 61 82.0
TWI63G0908 Tripterygium wilfordii HOM05D004131 ORTHO05D004778 2.6e-19 99.4 155 49.7
Ca_18622_v3 Cicer arietinum L. HOM05D004131 ORTHO05D004778 3.4e-19 99.0 61 78.7
Ca_18628_v3 Cicer arietinum L. HOM05D004131 ORTHO05D004778 3.4e-19 99.0 61 78.7
Lalb_Chr16g0384341 Lupinus albus HOM05D004131 ORTHO05D004778 3.4e-19 99.0 154 54.5
Medtr4g087630 Medicago truncatula HOM05D004131 ORTHO05D004778 3.4e-19 99.0 61 78.7
Nitab4.5_0000064g0030 Nicotiana tabacum HOM05D004131 ORTHO05D004778 3.4e-19 99.0 60 78.3
Nitab4.5_0005089g0010 Nicotiana tabacum HOM05D004131 ORTHO05D004778 3.4e-19 99.0 60 78.3
Psat7g119160 Pisum sativum HOM05D004131 ORTHO05D004778 3.4e-19 99.0 61 78.7
TPR.G23549 Trifolium pratense HOM05D004131 ORTHO05D004778 3.4e-19 99.0 61 78.7
Migut.N03052 Erythranthe guttata HOM05D004131 ORTHO05D004778 4.4e-19 98.6 145 55.9
BcaB05g25107 Brassica carinata HOM05D004131 ORTHO05D004778 7.5e-19 97.8 125 60.8
Sed0002263 Sechium edule HOM05D004131 ORTHO05D004778 9.8e-19 97.4 62 77.4
PGSC0003DMG400005367 Solanum tuberosum HOM05D004131 ORTHO05D004778 9.8e-19 97.4 63 74.6
BcaB02g07200 Brassica carinata HOM05D004131 ORTHO05D004778 1.3e-18 97.1 118 66.9
ECA130G0002 Erigeron canadensis HOM05D004131 ORTHO05D004778 1.7e-18 96.7 60 76.7
ECA233G3286 Erigeron canadensis HOM05D004131 ORTHO05D004778 1.7e-18 96.7 60 76.7
PSO675G2278 Papaver somniferum HOM05D004131 ORTHO05D004778 1.7e-18 96.7 62 74.2
Phvul.003G059400 Phaseolus vulgaris HOM05D004131 ORTHO05D004778 1.7e-18 96.7 61 77.0
TWI38G2196 Tripterygium wilfordii HOM05D004131 ORTHO05D004778 2.2e-18 96.3 155 51.6
Glyma.07G206100 Glycine max HOM05D004131 ORTHO05D004778 2.9e-18 95.9 61 75.4
Peaxi162Scf00483g00111 Petunia axillaris HOM05D004131 ORTHO05D004778 2.9e-18 95.9 58 79.3
Sopen12g009750 Solanum pennellii HOM05D004131 ORTHO05D004778 3.7e-18 95.5 63 73.0
Solyc12g019470.2 Solanum lycopersicum HOM05D004131 ORTHO05D004778 4.9e-18 95.1 155 51.6
Cc03_g14990 Coffea canephora HOM05D004131 ORTHO05D004778 6.4e-18 94.7 63 71.4
Dinv18309 Davidia involucrata HOM05D004131 ORTHO05D004778 6.4e-18 94.7 63 69.8
Lju470A13G17 Lonicera japonica HOM05D004131 ORTHO05D004778 6.4e-18 94.7 63 73.0
Lju470A13T20 Lonicera japonica HOM05D004131 ORTHO05D004778 6.4e-18 94.7 63 73.0
VMungo0251G3663 Vigna mungo HOM05D004131 ORTHO05D004778 6.4e-18 94.7 153 54.9
CSS0028329 Camellia sinensis var. sinensis HOM05D004131 ORTHO05D004778 8.3e-18 94.4 62 69.4
MELO3C022231.2 Cucumis melo HOM05D004131 ORTHO05D004778 8.3e-18 94.4 61 75.4
Duzib268G1863 Durio zibethinus HOM05D004131 ORTHO05D004778 8.3e-18 94.4 62 72.6
Lj4g0014155 Lotus japonicus HOM05D004131 ORTHO05D004778 8.3e-18 94.4 61 72.1
RcHm_v2.0_Chr2g0084981 Rosa chinensis HOM05D004131 ORTHO05D004778 8.3e-18 94.4 63 69.8
CAN.G448.4 Capsicum annuum HOM05D004131 ORTHO05D004778 1.1e-17 94.0 58 77.6
FAN23G0024 Fragaria x ananassa HOM05D004131 ORTHO05D004778 1.1e-17 94.0 63 68.3
FAN26G1335 Fragaria x ananassa HOM05D004131 ORTHO05D004778 1.1e-17 94.0 63 68.3
Glyma.02G138900 Glycine max HOM05D004131 ORTHO05D004778 1.1e-17 94.0 61 73.8
Prupe.7G267400 Prunus persica HOM05D004131 ORTHO05D004778 1.1e-17 94.0 63 69.8
PGR042G3815 Punica granatum HOM05D004131 ORTHO05D004778 1.1e-17 94.0 61 72.1
Atru.chr4.1513 Acer truncatum HOM05D004131 ORTHO05D004778 1.4e-17 93.6 166 50.0
CDE08G0022 Ceratophyllum demersum HOM05D004131 ORTHO05D004778 1.4e-17 93.6 158 50.6
Gohir.A10G146200 Gossypium hirsutum HOM05D004131 ORTHO05D004778 1.4e-17 93.6 62 71.0
Gorai.011G132700 Gossypium raimondii HOM05D004131 ORTHO05D004778 1.4e-17 93.6 62 71.0
Manes.01G017500 Manihot esculenta HOM05D004131 ORTHO05D004778 1.4e-17 93.6 63 69.8
PSO017G4173 Papaver somniferum HOM05D004131 ORTHO05D004778 1.4e-17 93.6 180 46.1
FvH4_1g00470 Fragaria vesca HOM05D004131 ORTHO05D004778 1.9e-17 93.2 61 70.5
FAN28G1052 Fragaria x ananassa HOM05D004131 ORTHO05D004778 1.9e-17 93.2 61 70.5
MD15G1147200 Malus domestica HOM05D004131 ORTHO05D004778 1.9e-17 93.2 61 72.1
GSVIVG01038193001 Vitis vinifera HOM05D004131 ORTHO05D004778 1.9e-17 93.2 62 71.0
Actinidia18408 Actinidia chinensis HOM05D004131 ORTHO05D004778 2.4e-17 92.8 153 52.3
MSTRG.24561 Avicennia marina HOM05D004131 ORTHO05D004778 2.4e-17 92.8 153 50.3
CSS0004184 Camellia sinensis var. sinensis HOM05D004131 ORTHO05D004778 2.4e-17 92.8 150 52.0
Dinv33225 Davidia involucrata HOM05D004131 ORTHO05D004778 2.4e-17 92.8 60 71.7
Lsat_1_v5_gn_7_67880 Lactuca sativa HOM05D004131 ORTHO05D004778 2.4e-17 92.8 161 48.4
MBI07_g36705_MAGBIO Magnolia biondii HOM05D004131 ORTHO05D004778 2.4e-17 92.8 60 75.0
MD02G1003900 Malus domestica HOM05D004131 ORTHO05D004778 2.4e-17 92.8 156 50.6
COL.COLO4_04655 Corchorus olitorius HOM05D004131 ORTHO05D004778 3.2e-17 92.4 63 69.8
Duzib212G0438 Durio zibethinus HOM05D004131 ORTHO05D004778 3.2e-17 92.4 62 71.0
Migut.G00833 Erythranthe guttata HOM05D004131 ORTHO05D004778 3.2e-17 92.4 62 69.4
Gohir.D10G120800 Gossypium hirsutum HOM05D004131 ORTHO05D004778 3.2e-17 92.4 62 69.4
HanXRQChr02g0059071 Helianthus annuus HOM05D004131 ORTHO05D004778 3.2e-17 92.4 57 77.2
Potri.007G139900 Populus trichocarpa HOM05D004131 ORTHO05D004778 3.2e-17 92.4 165 47.9
Carub.0005s2652 Capsella rubella HOM05D004131 ORTHO05D004778 4.1e-17 92.0 121 64.5
Cfa021469 Carpinus fangiana HOM05D004131 ORTHO05D004778 4.1e-17 92.0 62 71.0
Sabra07G0117600 Salix brachista HOM05D004131 ORTHO05D004778 4.1e-17 92.0 62 69.4
SalBow6G7192 Salvia bowleyana HOM05D004131 ORTHO05D004778 4.1e-17 92.0 155 51.0
CANSAT56G2001 Cannabis sativa HOM05D004131 ORTHO05D004778 5.4e-17 91.7 57 75.4
Lalb_Chr05g0218801 Lupinus albus HOM05D004131 ORTHO05D004778 5.4e-17 91.7 61 70.5
Sabra07G0113200 Salix brachista HOM05D004131 ORTHO05D004778 5.4e-17 91.7 166 47.0
CiPaw.01G198800 Carya illinoinensis HOM05D004131 ORTHO05D004778 7.1e-17 91.3 60 73.3
Lj6C265T11 Lonicera japonica HOM05D004131 ORTHO05D004778 7.1e-17 91.3 63 71.4
SalBow3G2571 Salvia bowleyana HOM05D004131 ORTHO05D004778 7.1e-17 91.3 58 75.9
TAR362G1052 Trochodendron aralioides HOM05D004131 ORTHO05D004778 7.1e-17 91.3 62 69.4
unitig_8.g3637 Utricularia gibba HOM05D004131 ORTHO05D004778 7.1e-17 91.3 61 70.5
Aqoxy2G04165 Aquilegia oxysepala HOM05D004131 ORTHO05D004778 9.2e-17 90.9 62 69.4
CSS0000211 Camellia sinensis var. sinensis HOM05D004131 ORTHO05D004778 9.2e-17 90.9 58 72.4
CSS0046112 Camellia sinensis var. sinensis HOM05D004131 ORTHO05D004778 9.2e-17 90.9 58 72.4
Ciclev10022332m.g Citrus clementina HOM05D004131 ORTHO05D004778 9.2e-17 90.9 155 49.0
Haze_11173 Corylus avellana HOM05D004131 ORTHO05D004778 9.2e-17 90.9 62 69.4
Haze_11178 Corylus avellana HOM05D004131 ORTHO05D004778 9.2e-17 90.9 62 69.4
Actinidia28972 Actinidia chinensis HOM05D004131 ORTHO05D004778 1.2e-16 90.5 57 71.9
C08p34760 Brassica napus HOM05D004131 ORTHO05D004778 1.2e-16 90.5 131 48.1
BolC8t51078H Brassica oleracea HOM05D004131 ORTHO05D004778 1.2e-16 90.5 131 48.1
Ah.07g202990 Amaranthus hybridus HOM05D004131 ORTHO05D004778 1.6e-16 90.1 61 70.5
CsaV3_5G040580 Cucumis sativus L. HOM05D004131 ORTHO05D004778 1.6e-16 90.1 156 52.6
Potri.017G010100 Populus trichocarpa HOM05D004131 ORTHO05D004778 1.6e-16 90.1 153 51.0
HPP92_023727 Vanilla planifolia HOM05D004131 ORTHO05D004778 2.1e-16 89.7 61 70.5
ATR0743G176 Amborella trichopoda HOM05D004131 ORTHO05D004778 2.7e-16 89.4 62 69.4
Nn7g37517 Nelumbo nucifera HOM05D004131 ORTHO05D004778 2.7e-16 89.4 155 49.0
Zm00001eb425720 Zea mays HOM05D004131 ORTHO05D004778 7.8e-16 87.8 57 73.7
Hund12374 Selenicereus undatus HOM05D004131 ORTHO05D004778 1.7e-15 86.7 58 70.7
Ah.13g073340 Amaranthus hybridus HOM05D004131 ORTHO05D004778 2.3e-15 86.3 61 67.2
Aqoxy604s001 Aquilegia oxysepala HOM05D004131 ORTHO05D004778 2.3e-15 86.3 60 66.7
Sc13g0007290 Simmondsia chinensis HOM05D004131 ORTHO05D004778 3.0e-15 85.9 56 71.4
AUR62002422 Chenopodium quinoa HOM05D004131 ORTHO05D004778 5.1e-15 85.1 64 64.1
CiPaw.02G123300 Carya illinoinensis HOM05D004131 ORTHO05D004778 6.6e-15 84.7 57 71.9
AUR62023766 Chenopodium quinoa HOM05D004131 ORTHO05D004778 6.6e-15 84.7 61 67.2
Lj6C255T9 Lonicera japonica HOM05D004131 ORTHO05D004778 8.6e-15 84.3 57 71.9
Sabra17G0009400 Salix brachista HOM05D004131 ORTHO05D004778 8.6e-15 84.3 61 63.9
BcaC07g40452 Brassica carinata HOM05D004131 ORTHO05D004778 1.1e-14 84.0 127 59.8
Eucgr.G01598 Eucalyptus grandis HOM05D004131 ORTHO05D004778 1.9e-14 83.2 56 67.9
Eucgr.L00027 Eucalyptus grandis HOM05D004131 ORTHO05D004778 1.9e-14 83.2 56 67.9
Oeu050314.3 Olea europaea HOM05D004131 ORTHO05D004778 2.5e-14 82.8 177 45.2
EL10Ac3g06119 Beta vulgaris HOM05D004131 ORTHO05D004778 3.3e-14 82.4 58 69.0
BcaB05g25110 Brassica carinata HOM05D004131 ORTHO05D004778 3.3e-14 82.4 115 61.7
BcaB05g25109 Brassica carinata HOM05D004131 ORTHO05D004778 4.3e-14 82.0 115 61.7
arahy.Tifrunner.gnm1.ann1.GY80IK Arachis hypogaea HOM05D004131 ORTHO05D004778 1.2e-13 80.5 85 52.9
AagrBONN_evm.TU.Sc2ySwM_344.2765 Anthoceros agrestis HOM05D004131 ORTHO05D004778 2.1e-13 79.7 63 65.1
SEGI_19170 Sequoiadendron giganteum HOM05D004131 ORTHO05D004778 8.1e-13 77.8 68 60.3
SMO364G0381 Selaginella moellendorffii HOM05D004131 ORTHO05D004778 2.3e-12 76.3 63 60.3
Mapoly0055s0100 Marchantia polymorpha HOM05D004131 ORTHO05D004778 4.0e-12 75.5 63 60.3
Pp3c3_18840 Physcomitrium patens HOM05D004131 ORTHO05D004778 6.8e-12 74.7 58 63.8
CBR_g6538 Chara braunii HOM05D004131 ORTHO05D004778 1.7e-10 70.1 63 58.7
BcaB02g07199 Brassica carinata HOM05D004131 ORTHO05D004778 8.4e-10 67.8 39 87.2
QL10p059329 Quercus lobata HOM05D004131 ORTHO05D004778 1.4e-09 67.0 175 41.7
BcaB05g25113 Brassica carinata HOM05D004131 ORTHO05D004778 2.4e-09 66.2 95 65.3
vmacro15701 Vaccinium macrocarpon HOM05D004131 ORTHO05D004778 2.4e-09 66.2 119 37.0
BcaC07g40508 Brassica carinata HOM05D004131 ORTHO05D004778 4.1e-09 65.5 70 54.3
QL10p058544 Quercus lobata HOM05D004131 ORTHO05D004778 5.4e-09 65.1 82 46.3
Thecc.04G162100 Theobroma cacao HOM05D004131 ORTHO05D004778 5.4e-09 65.1 48 66.7
Rhsim02G0086100 Rhododendron simsii HOM05D004131 ORTHO05D004778 1.2e-08 63.9 47 63.8
RhsimUnG0015600 Rhododendron simsii HOM05D004131 ORTHO05D004778 1.2e-08 63.9 47 63.8
ClCG08G000030 Citrullus lanatus HOM05D004131 ORTHO05D004778 2.1e-08 63.2 43 72.1
BcaNung06582 Brassica carinata HOM05D004131 ORTHO05D004778 2.7e-08 62.8 41 78.0
BcaB05g25106 Brassica carinata HOM05D004131 ORTHO05D004778 4.6e-08 62.0 37 81.1
BcaB05g25118 Brassica carinata HOM05D004131 ORTHO05D004778 1.3e-07 60.5 58 63.8
Lju470A13T22 Lonicera japonica HOM05D004131 ORTHO05D004778 1.5e-06 57.0 44 63.6
BcaB05g25117 Brassica carinata HOM05D004131 ORTHO05D004778 3.3e-06 55.8 46 67.4
BraA09t40640Z Brassica rapa HOM05D004131 ORTHO05D004778 5.6e-06 55.1 37 73.0


User provided reference genes

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