Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g08221 Brassica carinata HOM05D006244 ORTHO05D007401 1.3e-160 569.7 288 100.0
A04p02170 Brassica napus HOM05D006244 ORTHO05D007401 2.9e-144 515.4 290 90.0
BraA04t15944Z Brassica rapa HOM05D006244 ORTHO05D007401 6.8e-138 494.2 290 87.2
Sp5g03670 Schrenkiella parvula HOM05D006244 ORTHO05D007401 7.5e-137 490.7 294 85.4
C08p34500 Brassica napus HOM05D006244 ORTHO05D007401 2.4e-135 485.7 290 85.5
BolC8t51051H Brassica oleracea HOM05D006244 ORTHO05D007401 2.4e-135 485.7 290 85.5
BcaC07g40479 Brassica carinata HOM05D006244 ORTHO05D007401 3.2e-135 485.3 287 85.7
Thhalv10006132m.g Eutrema salsugineum HOM05D006244 ORTHO05D007401 3.5e-134 481.9 294 84.7
AT3G59490 Arabidopsis thaliana HOM05D006244 ORTHO05D007401 1.0e-133 480.3 294 83.3
AL5G41400 Arabidopsis lyrata HOM05D006244 ORTHO05D007401 2.3e-133 479.2 293 84.3
A09p51770 Brassica napus HOM05D006244 ORTHO05D007401 8.6e-133 477.2 290 84.5
Carub.0005s2622 Capsella rubella HOM05D006244 ORTHO05D007401 9.5e-132 473.8 294 83.0
BcaNung05942 Brassica carinata HOM05D006244 ORTHO05D007401 6.2e-131 471.1 276 86.2
BcaC07g40478 Brassica carinata HOM05D006244 ORTHO05D007401 1.2e-129 466.8 287 82.2
CARHR169870 Cardamine hirsuta HOM05D006244 ORTHO05D007401 4.9e-128 461.5 294 81.0
BraA09t40612Z Brassica rapa HOM05D006244 ORTHO05D007401 2.7e-126 455.7 285 80.7
BolC4t24903H Brassica oleracea HOM05D006244 ORTHO05D007401 1.9e-119 433.0 290 77.9
Aa31LG10G13810 Aethionema arabicum HOM05D006244 ORTHO05D007401 2.1e-115 419.5 295 75.6
THA.LOC104803749 Tarenaya hassleriana HOM05D006244 ORTHO05D007401 4.4e-113 411.8 304 70.7
C04p33420 Brassica napus HOM05D006244 ORTHO05D007401 3.2e-103 379.0 290 71.7
QL05p011148 Quercus lobata HOM05D006244 ORTHO05D007401 1.4e-95 353.6 305 62.0
QL10p050150 Quercus lobata HOM05D006244 ORTHO05D007401 3.2e-95 352.4 305 61.3
Cpa.g.sc9.298 Carica papaya HOM05D006244 ORTHO05D007401 5.5e-95 351.7 306 62.4
TAR636G2962 Trochodendron aralioides HOM05D006244 ORTHO05D007401 7.1e-95 351.3 306 58.8
Cfa020094 Carpinus fangiana HOM05D006244 ORTHO05D007401 7.4e-92 341.3 306 59.8
Atru.chr4.1240 Acer truncatum HOM05D006244 ORTHO05D007401 2.1e-91 339.7 293 62.1
Dinv22748 Davidia involucrata HOM05D006244 ORTHO05D007401 4.8e-91 338.6 293 61.1
Duzib175G0007 Durio zibethinus HOM05D006244 ORTHO05D007401 5.3e-90 335.1 305 59.3
COL.COLO4_12977 Corchorus olitorius HOM05D006244 ORTHO05D007401 2.0e-89 333.2 329 56.5
Gorai.011G141500 Gossypium raimondii HOM05D006244 ORTHO05D007401 2.0e-89 333.2 305 58.7
Actinidia11297 Actinidia chinensis HOM05D006244 ORTHO05D007401 2.6e-89 332.8 299 59.5
Hma1.2p1_0324F.1_g125510 Hydrangea macrophylla HOM05D006244 ORTHO05D007401 3.4e-89 332.4 294 59.9
Duzib151G0743 Durio zibethinus HOM05D006244 ORTHO05D007401 1.3e-88 330.5 305 58.7
Manes.04G043800 Manihot esculenta HOM05D006244 ORTHO05D007401 1.3e-88 330.5 307 58.3
Potri.017G028900 Populus trichocarpa HOM05D006244 ORTHO05D007401 2.2e-88 329.7 300 58.7
Hund03170 Selenicereus undatus HOM05D006244 ORTHO05D007401 2.2e-88 329.7 299 56.9
FAN07G2433 Fragaria x ananassa HOM05D006244 ORTHO05D007401 1.1e-87 327.4 304 56.2
Gohir.D10G128300 Gossypium hirsutum HOM05D006244 ORTHO05D007401 1.9e-87 326.6 305 57.7
Ciclev10021382m.g Citrus clementina HOM05D006244 ORTHO05D007401 4.2e-87 325.5 299 58.2
CSS0032343 Camellia sinensis var. sinensis HOM05D006244 ORTHO05D007401 7.1e-87 324.7 306 55.6
Sc19g0002910 Simmondsia chinensis HOM05D006244 ORTHO05D007401 7.1e-87 324.7 306 54.2
PSO732G0675 Papaver somniferum HOM05D006244 ORTHO05D007401 9.3e-87 324.3 299 57.2
PSO675G8539 Papaver somniferum HOM05D006244 ORTHO05D007401 1.6e-86 323.6 312 56.1
Aqoxy2G04144 Aquilegia oxysepala HOM05D006244 ORTHO05D007401 2.7e-86 322.8 292 57.2
FvH4_4g10850 Fragaria vesca HOM05D006244 ORTHO05D007401 7.9e-86 321.2 301 56.1
FAN12G2117 Fragaria x ananassa HOM05D006244 ORTHO05D007401 7.9e-86 321.2 301 56.1
CANSAT78G1025 Cannabis sativa HOM05D006244 ORTHO05D007401 1.8e-85 320.1 305 56.1
CiPaw.02G053900 Carya illinoinensis HOM05D006244 ORTHO05D007401 1.8e-85 320.1 306 56.9
Gohir.A10G138500 Gossypium hirsutum HOM05D006244 ORTHO05D007401 3.0e-85 319.3 305 56.7
RcHm_v2.0_Chr4g0406631 Rosa chinensis HOM05D006244 ORTHO05D007401 8.7e-85 317.8 304 54.9
AUR62023861 Chenopodium quinoa HOM05D006244 ORTHO05D007401 1.1e-84 317.4 303 56.8
Thecc.04G177000 Theobroma cacao HOM05D006244 ORTHO05D007401 1.1e-84 317.4 303 56.4
Eucgr.H00368 Eucalyptus grandis HOM05D006244 ORTHO05D007401 1.5e-84 317.0 309 55.0
Sabra17G0017500 Salix brachista HOM05D006244 ORTHO05D007401 3.3e-84 315.8 300 57.3
MELO3C009823.2 Cucumis melo HOM05D006244 ORTHO05D007401 9.6e-84 314.3 304 56.2
Nitab4.5_0008822g0040 Nicotiana tabacum HOM05D006244 ORTHO05D007401 1.3e-83 313.9 305 55.4
EL10Ac3g05981 Beta vulgaris HOM05D006244 ORTHO05D007401 2.1e-83 313.2 303 55.4
HanXRQChr11g0343701 Helianthus annuus HOM05D006244 ORTHO05D007401 4.8e-83 312.0 294 55.8
Peaxi162Scf00126g00623 Petunia axillaris HOM05D006244 ORTHO05D007401 1.1e-82 310.8 308 54.2
ECA248G0275 Erigeron canadensis HOM05D006244 ORTHO05D007401 1.4e-82 310.5 305 54.4
GSVIVG01010791001 Vitis vinifera HOM05D006244 ORTHO05D007401 1.4e-82 310.5 296 55.1
CsaV3_3G040880 Cucumis sativus L. HOM05D006244 ORTHO05D007401 1.8e-82 310.1 304 55.3
Nitab4.5_0004117g0020 Nicotiana tabacum HOM05D006244 ORTHO05D007401 4.1e-82 308.9 305 54.8
Lalb_Chr22g0352091 Lupinus albus HOM05D006244 ORTHO05D007401 1.5e-81 307.0 305 54.8
Ah.07g202200 Amaranthus hybridus HOM05D006244 ORTHO05D007401 3.4e-81 305.8 302 53.0
Psat5g289400 Pisum sativum HOM05D006244 ORTHO05D007401 4.5e-81 305.4 298 53.7
SalBow3G2237 Salvia bowleyana HOM05D006244 ORTHO05D007401 4.5e-81 305.4 301 53.2
Sopen11g020640 Solanum pennellii HOM05D006244 ORTHO05D007401 5.9e-81 305.1 307 53.1
MD04G1042500 Malus domestica HOM05D006244 ORTHO05D007401 7.6e-81 304.7 303 54.1
Prupe.1G196900 Prunus persica HOM05D006244 ORTHO05D007401 7.6e-81 304.7 305 55.1
Lsat_1_v5_gn_1_77900 Lactuca sativa HOM05D006244 ORTHO05D007401 1.0e-80 304.3 295 55.6
Lj3g0008901 Lotus japonicus HOM05D006244 ORTHO05D007401 2.2e-80 303.1 304 53.3
Solyc11g045210.2 Solanum lycopersicum HOM05D006244 ORTHO05D007401 2.9e-80 302.8 307 53.4
Medtr2g098960 Medicago truncatula HOM05D006244 ORTHO05D007401 5.0e-80 302.0 298 53.4
Rhsim09G0025200 Rhododendron simsii HOM05D006244 ORTHO05D007401 5.0e-80 302.0 363 46.0
PGSC0003DMG400022864 Solanum tuberosum HOM05D006244 ORTHO05D007401 8.5e-80 301.2 308 52.6
MSTRG.9759 Avicennia marina HOM05D006244 ORTHO05D007401 1.4e-79 300.4 302 53.3
AUR62002326 Chenopodium quinoa HOM05D006244 ORTHO05D007401 3.2e-79 299.3 303 54.1
ClCG10G015550 Citrullus lanatus HOM05D006244 ORTHO05D007401 4.2e-79 298.9 303 53.5
PGR142G0422 Punica granatum HOM05D006244 ORTHO05D007401 7.2e-79 298.1 303 53.8
TWI38G0370 Tripterygium wilfordii HOM05D006244 ORTHO05D007401 1.6e-78 297.0 307 52.1
CAN.G31.8 Capsicum annuum HOM05D006244 ORTHO05D007401 2.7e-78 296.2 308 53.6
Cc07_g21300 Coffea canephora HOM05D006244 ORTHO05D007401 2.7e-78 296.2 299 54.2
unitig_0.g2404 Utricularia gibba HOM05D006244 ORTHO05D007401 2.7e-78 296.2 294 51.7
TPR.G18836 Trifolium pratense HOM05D006244 ORTHO05D007401 6.1e-78 295.0 298 52.0
Migut.G01000 Erythranthe guttata HOM05D006244 ORTHO05D007401 6.7e-77 291.6 290 51.7
Glyma.15G029700 Glycine max HOM05D006244 ORTHO05D007401 5.7e-76 288.5 304 52.3
arahy.Tifrunner.gnm1.ann1.LPC3IP Arachis hypogaea HOM05D006244 ORTHO05D007401 2.4e-74 283.1 305 50.8
MBI08_g33169_MAGBIO Magnolia biondii HOM05D006244 ORTHO05D007401 5.3e-74 282.0 312 51.9
HPP92_001264 Vanilla planifolia HOM05D006244 ORTHO05D007401 8.5e-72 274.6 313 47.0
HPP92_001248 Vanilla planifolia HOM05D006244 ORTHO05D007401 1.4e-71 273.9 313 47.0
ATR0743G009 Amborella trichopoda HOM05D006244 ORTHO05D007401 3.2e-71 272.7 298 49.3
arahy.Tifrunner.gnm1.ann1.IE55HN Arachis hypogaea HOM05D006244 ORTHO05D007401 3.0e-69 266.2 294 49.3
Nn3g18564 Nelumbo nucifera HOM05D006244 ORTHO05D007401 4.8e-67 258.8 302 47.4
Actinidia27645 Actinidia chinensis HOM05D006244 ORTHO05D007401 8.8e-61 238.0 213 61.0
C04p32460 Brassica napus HOM05D006244 ORTHO05D007401 1.5e-60 237.3 192 67.2
VMungo1080G0762 Vigna mungo HOM05D006244 ORTHO05D007401 6.3e-59 231.9 261 49.0
Phvul.005G153400 Phaseolus vulgaris HOM05D006244 ORTHO05D007401 1.9e-55 220.3 305 43.9
Sed0026513 Sechium edule HOM05D006244 ORTHO05D007401 6.1e-54 215.3 234 53.0
DCAR_028445 Daucus carota HOM05D006244 ORTHO05D007401 4.0e-53 212.6 230 49.1
FAN17G1708 Fragaria x ananassa HOM05D006244 ORTHO05D007401 2.4e-50 203.4 199 53.8
Lju337A6T20 Lonicera japonica HOM05D006244 ORTHO05D007401 1.2e-49 201.1 264 45.8
vmacro00644 Vaccinium macrocarpon HOM05D006244 ORTHO05D007401 1.7e-48 197.2 201 52.2
Zm00001eb318410 Zea mays HOM05D006244 ORTHO05D007401 4.5e-41 172.6 242 42.6
Cfa015178 Carpinus fangiana HOM05D006244 ORTHO05D007401 3.6e-38 162.9 170 56.5
MBI08_g09972_MAGBIO Magnolia biondii HOM05D006244 ORTHO05D007401 5.7e-36 155.6 197 46.2
BcaC02g10138 Brassica carinata HOM05D006244 ORTHO05D007401 3.1e-34 149.8 243 44.4
vmacro00645 Vaccinium macrocarpon HOM05D006244 ORTHO05D007401 6.6e-32 142.1 105 62.9
Psat5g289440 Pisum sativum HOM05D006244 ORTHO05D007401 2.9e-27 126.7 119 55.5
Pp3c9_3600 Physcomitrium patens HOM05D006244 ORTHO05D007401 6.4e-27 125.6 305 30.5
Os09g0515300 Oryza sativa ssp. japonica HOM05D006244 ORTHO05D007401 2.0e-20 104.0 111 50.5
Lj6A77G23 Lonicera japonica HOM05D006244 ORTHO05D007401 3.4e-20 103.2 94 57.4
Sabra17G0062000 Salix brachista HOM05D006244 ORTHO05D007401 1.3e-19 101.3 120 51.7
Peaxi162Scf01193g00009 Petunia axillaris HOM05D006244 ORTHO05D007401 5.4e-18 95.9 131 42.7
Peaxi162Scf00533g00611 Petunia axillaris HOM05D006244 ORTHO05D007401 1.2e-17 94.7 131 42.7
SMO364G0376 Selaginella moellendorffii HOM05D006244 ORTHO05D007401 1.2e-17 94.7 268 28.0
Peaxi162Scf00066g02019 Petunia axillaris HOM05D006244 ORTHO05D007401 2.7e-17 93.6 131 42.0
Lj6C77T3 Lonicera japonica HOM05D006244 ORTHO05D007401 3.0e-16 90.1 65 63.1
Lju337A6G22 Lonicera japonica HOM05D006244 ORTHO05D007401 3.9e-16 89.7 65 61.5
Peaxi162Scf00272g00041 Petunia axillaris HOM05D006244 ORTHO05D007401 4.3e-15 86.3 120 40.8
Peaxi162Scf00627g00001 Petunia axillaris HOM05D006244 ORTHO05D007401 6.2e-14 82.4 120 40.0
Zm00001eb239190 Zea mays HOM05D001072 ORTHO05D007401 1.8e-13 80.9 79 48.1
Glyma.13G344600 Glycine max HOM05D006244 ORTHO05D007401 5.2e-13 79.3 58 60.3
Peaxi162Scf00404g00815 Petunia axillaris HOM05D006244 ORTHO05D007401 5.2e-13 79.3 134 39.6
AagrBONN_evm.TU.Sc2ySwM_228.3866 Anthoceros agrestis HOM05D006244 ORTHO05D007401 5.1e-08 62.8 112 36.6


User provided reference genes

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