Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g08195 Brassica carinata HOM05D004544 ORTHO05D005504 1.9e-273 945.3 483 100.0
BcaC02g10108 Brassica carinata HOM05D004544 ORTHO05D005504 2.2e-253 878.6 460 97.4
C04p32650 Brassica napus HOM05D004544 ORTHO05D005504 3.1e-252 874.8 460 97.2
BolC4t24833H Brassica oleracea HOM05D004544 ORTHO05D005504 1.2e-251 872.8 461 97.0
BraA04t15912Z Brassica rapa HOM05D004544 ORTHO05D005504 3.4e-251 871.3 460 96.5
A04p01890 Brassica napus HOM05D004544 ORTHO05D005504 1.7e-250 869.0 460 97.0
Thhalv10005961m.g Eutrema salsugineum HOM05D004544 ORTHO05D005504 1.3e-242 842.8 460 94.6
AT3G60070 Arabidopsis thaliana HOM05D004544 ORTHO05D005504 3.8e-242 841.3 460 93.5
Carub.0005s2680 Capsella rubella HOM05D004544 ORTHO05D005504 9.4e-241 836.6 460 92.8
AL5G42260 Arabidopsis lyrata HOM05D004544 ORTHO05D005504 3.6e-240 834.7 461 93.3
Sp5g03140 Schrenkiella parvula HOM05D004544 ORTHO05D005504 6.3e-237 823.9 460 92.4
Aa31LG10G14230 Aethionema arabicum HOM05D004544 ORTHO05D005504 1.3e-218 763.1 459 85.8
CARHR139460 Cardamine hirsuta HOM05D004544 ORTHO05D005504 7.5e-214 747.3 460 83.3
Sp4g26350 Schrenkiella parvula HOM05D004544 ORTHO05D005504 3.7e-213 745.0 461 82.4
Thhalv10001436m.g Eutrema salsugineum HOM05D004544 ORTHO05D005504 4.8e-213 744.6 461 82.6
AT2G44280 Arabidopsis thaliana HOM05D004544 ORTHO05D005504 4.1e-212 741.5 455 83.3
Carub.0004s2687 Capsella rubella HOM05D004544 ORTHO05D005504 1.6e-211 739.6 455 83.3
A05p04480 Brassica napus HOM05D004544 ORTHO05D005504 2.7e-211 738.8 461 82.2
AL4G43240 Arabidopsis lyrata HOM05D004544 ORTHO05D005504 4.5e-211 738.0 455 82.9
BcaB02g08807 Brassica carinata HOM05D004544 ORTHO05D005504 5.9e-211 737.6 461 82.2
BraA05t19424Z Brassica rapa HOM05D004544 ORTHO05D005504 5.9e-211 737.6 461 82.2
BcaNung06603 Brassica carinata HOM05D004544 ORTHO05D005504 1.7e-210 736.1 461 81.8
BolC4t22159H Brassica oleracea HOM05D004544 ORTHO05D005504 1.7e-210 736.1 461 81.8
THA.LOC104817137 Tarenaya hassleriana HOM05D004544 ORTHO05D005504 5.0e-210 734.6 455 82.2
C04p05190 Brassica napus HOM05D004544 ORTHO05D005504 3.3e-209 731.9 461 81.8
BolC4t28598H Brassica oleracea HOM05D004544 ORTHO05D005504 6.1e-208 727.6 461 80.9
A04p33250 Brassica napus HOM05D004544 ORTHO05D005504 6.8e-207 724.2 460 80.4
BraA04t18786Z Brassica rapa HOM05D004544 ORTHO05D005504 6.8e-207 724.2 460 80.4
Aa31LG1G25900 Aethionema arabicum HOM05D004544 ORTHO05D005504 2.6e-206 722.2 482 78.4
C04p70950 Brassica napus HOM05D004544 ORTHO05D005504 8.3e-205 717.2 488 76.4
BcaB06g29367 Brassica carinata HOM05D004544 ORTHO05D005504 1.8e-199 699.5 482 76.6
Atru.chr12.1432 Acer truncatum HOM05D004544 ORTHO05D005504 1.8e-183 646.4 455 71.6
CiPaw.13G000600 Carya illinoinensis HOM05D004544 ORTHO05D005504 6.8e-183 644.4 455 71.6
Duzib068G1099 Durio zibethinus HOM05D004544 ORTHO05D005504 2.6e-182 642.5 460 71.5
Thecc.08G193200 Theobroma cacao HOM05D004544 ORTHO05D005504 1.3e-181 640.2 460 72.2
Ciclev10031412m.g Citrus clementina HOM05D004544 ORTHO05D005504 1.9e-180 636.3 467 68.5
CANSAT11G0055 Cannabis sativa HOM05D004544 ORTHO05D005504 2.4e-180 636.0 458 71.6
Potri.001G232100 Populus trichocarpa HOM05D004544 ORTHO05D005504 2.7e-179 632.5 455 70.3
RcHm_v2.0_Chr1g0313141 Rosa chinensis HOM05D004544 ORTHO05D005504 3.5e-179 632.1 453 71.5
Cfa010700 Carpinus fangiana HOM05D004544 ORTHO05D005504 1.0e-178 630.6 455 70.8
Cpa.g.c29747 Carica papaya HOM05D004544 ORTHO05D005504 1.3e-178 630.2 392 80.6
Eucgr.E04336 Eucalyptus grandis HOM05D004544 ORTHO05D005504 1.3e-178 630.2 455 69.2
Potri.009G024600 Populus trichocarpa HOM05D004544 ORTHO05D005504 1.7e-178 629.8 455 69.9
TWI09G1596 Tripterygium wilfordii HOM05D004544 ORTHO05D005504 3.0e-178 629.0 460 69.6
PGR031G1320 Punica granatum HOM05D004544 ORTHO05D005504 8.6e-178 627.5 460 69.3
Gohir.D08G037000 Gossypium hirsutum HOM05D004544 ORTHO05D005504 1.1e-177 627.1 460 70.2
Gorai.004G035000 Gossypium raimondii HOM05D004544 ORTHO05D005504 1.1e-177 627.1 460 70.2
FvH4_c5g00010 Fragaria vesca HOM05D004544 ORTHO05D005504 7.3e-177 624.4 453 70.4
FAN01G0284 Fragaria x ananassa HOM05D004544 ORTHO05D005504 1.4e-175 620.2 453 69.8
Lj3g0003623 Lotus japonicus HOM05D004544 ORTHO05D005504 4.0e-175 618.6 449 70.8
CsaV3_7G031530 Cucumis sativus L. HOM05D004544 ORTHO05D005504 8.9e-175 617.5 452 69.9
Glyma.15G267700 Glycine max HOM05D004544 ORTHO05D005504 8.9e-175 617.5 448 70.5
Glyma.08G158600 Glycine max HOM05D004544 ORTHO05D005504 2.0e-174 616.3 448 70.8
arahy.Tifrunner.gnm1.ann1.HLF3VC Arachis hypogaea HOM05D004544 ORTHO05D005504 2.6e-174 615.9 501 65.1
MD02G1320400 Malus domestica HOM05D004544 ORTHO05D005504 2.6e-174 615.9 458 69.2
Medtr2g062270 Medicago truncatula HOM05D004544 ORTHO05D005504 4.4e-174 615.1 449 68.8
Lalb_Chr25g0283741 Lupinus albus HOM05D004544 ORTHO05D005504 5.8e-174 614.8 449 70.2
arahy.Tifrunner.gnm1.ann1.ZSC88Q Arachis hypogaea HOM05D004544 ORTHO05D005504 2.2e-173 612.8 477 67.3
Rhsim07G0049300 Rhododendron simsii HOM05D004544 ORTHO05D005504 2.9e-173 612.5 453 68.2
TPR.G16160 Trifolium pratense HOM05D004544 ORTHO05D005504 4.2e-172 608.6 449 68.2
GSVIVG01001349001 Vitis vinifera HOM05D004544 ORTHO05D005504 1.2e-171 607.1 456 67.5
Phvul.005G042600 Phaseolus vulgaris HOM05D004544 ORTHO05D005504 4.6e-171 605.1 448 69.2
VMungo1080G0174 Vigna mungo HOM05D004544 ORTHO05D005504 4.6e-171 605.1 448 68.8
CSS0044763 Camellia sinensis var. sinensis HOM05D004544 ORTHO05D005504 1.3e-170 603.6 455 67.3
Ca_03221_v3 Cicer arietinum L. HOM05D004544 ORTHO05D005504 1.7e-170 603.2 450 67.8
Dinv43503 Davidia involucrata HOM05D004544 ORTHO05D005504 5.1e-170 601.7 453 67.3
Sopen01g033220 Solanum pennellii HOM05D004544 ORTHO05D005504 1.1e-169 600.5 459 65.1
Solyc01g073660.3 Solanum lycopersicum HOM05D004544 ORTHO05D005504 1.5e-169 600.1 459 65.1
Actinidia05839 Actinidia chinensis HOM05D004544 ORTHO05D005504 2.5e-169 599.4 453 68.2
CAN.G1361.5 Capsicum annuum HOM05D004544 ORTHO05D005504 2.5e-169 599.4 453 65.6
TAR633G2617 Trochodendron aralioides HOM05D004544 ORTHO05D005504 5.6e-169 598.2 453 66.9
ClCG09G003650 Citrullus lanatus HOM05D004544 ORTHO05D005504 7.3e-169 597.8 494 63.8
Nn7g35919 Nelumbo nucifera HOM05D004544 ORTHO05D005504 2.1e-168 596.3 456 67.3
Aqoxy1G00422 Aquilegia oxysepala HOM05D004544 ORTHO05D005504 3.6e-168 595.5 458 65.3
Psat1g129360 Pisum sativum HOM05D004544 ORTHO05D005504 3.6e-168 595.5 449 67.3
PSO170G0355 Papaver somniferum HOM05D004544 ORTHO05D005504 6.2e-168 594.7 457 67.6
Sed0009480 Sechium edule HOM05D004544 ORTHO05D005504 6.2e-168 594.7 452 67.0
Cc02_g26820 Coffea canephora HOM05D004544 ORTHO05D005504 2.4e-167 592.8 453 67.3
MBI01_g14445_MAGBIO Magnolia biondii HOM05D004544 ORTHO05D005504 3.1e-167 592.4 463 66.5
vmacro22467 Vaccinium macrocarpon HOM05D004544 ORTHO05D005504 6.9e-167 591.3 469 65.2
EL10Ac1g02232 Beta vulgaris HOM05D004544 ORTHO05D005504 1.2e-166 590.5 449 65.3
EL10Ac1g02233 Beta vulgaris HOM05D004544 ORTHO05D005504 1.2e-166 590.5 449 65.3
Hma1.2p1_0128F.1_g059850 Hydrangea macrophylla HOM05D004544 ORTHO05D005504 2.0e-166 589.7 429 68.5
Oeu060709.1 Olea europaea HOM05D004544 ORTHO05D005504 2.6e-166 589.3 453 66.7
PSO063G0048 Papaver somniferum HOM05D004544 ORTHO05D005504 2.6e-166 589.3 457 67.2
AUR62035404 Chenopodium quinoa HOM05D004544 ORTHO05D005504 4.4e-166 588.6 455 65.7
Manes.10G153000 Manihot esculenta HOM05D004544 ORTHO05D005504 1.4e-164 583.6 400 73.8
Gohir.A08G026600 Gossypium hirsutum HOM05D004544 ORTHO05D005504 3.2e-164 582.4 460 66.3
DCAR_024995 Daucus carota HOM05D004544 ORTHO05D005504 1.2e-163 580.5 458 66.6
SGA_v2.0_scaffold260G45890 Striga asiatica HOM05D004544 ORTHO05D005504 1.6e-163 580.1 486 61.7
Nn2g15791 Nelumbo nucifera HOM05D004544 ORTHO05D005504 1.7e-162 576.6 456 65.6
ECA236G1315 Erigeron canadensis HOM05D004544 ORTHO05D005504 7.3e-161 571.2 442 64.5
Sc03g0003850 Simmondsia chinensis HOM05D004544 ORTHO05D005504 1.3e-160 570.5 453 64.9
HanXRQChr04g0117441 Helianthus annuus HOM05D004544 ORTHO05D005504 1.6e-160 570.1 450 64.2
Nn2g15790 Nelumbo nucifera HOM05D004544 ORTHO05D005504 4.8e-160 568.5 445 65.8
PGSC0003DMG400031131 Solanum tuberosum HOM05D004544 ORTHO05D005504 2.0e-158 563.1 478 60.9
CDE04G3336 Ceratophyllum demersum HOM05D004544 ORTHO05D005504 9.9e-158 560.8 449 64.6
unitig_749.g13487 Utricularia gibba HOM05D004544 ORTHO05D005504 2.9e-157 559.3 462 61.5
Peaxi162Scf00402g00941 Petunia axillaris HOM05D004544 ORTHO05D005504 6.4e-157 558.1 453 62.3
HPP92_012523 Vanilla planifolia HOM05D004544 ORTHO05D005504 6.4e-157 558.1 445 63.1
SalBow5G3691 Salvia bowleyana HOM05D004544 ORTHO05D005504 2.1e-155 553.1 474 61.2
AUR62041888 Chenopodium quinoa HOM05D004544 ORTHO05D005504 2.5e-153 546.2 548 53.6
Lsat_1_v5_gn_7_33840 Lactuca sativa HOM05D004544 ORTHO05D005504 5.6e-153 545.0 395 67.1
TAR633G0112 Trochodendron aralioides HOM05D004544 ORTHO05D005504 7.4e-153 544.7 421 67.2
Os07g0578200 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 6.9e-151 538.1 459 61.4
Haze_03276 Corylus avellana HOM05D004544 ORTHO05D005504 5.8e-150 535.0 396 68.7
Zm00001eb325500 Zea mays HOM05D004544 ORTHO05D005504 1.4e-148 530.4 476 59.7
ATR0001G054 Amborella trichopoda HOM05D004544 ORTHO05D005504 2.1e-147 526.6 397 67.0
CDE05G1716 Ceratophyllum demersum HOM05D004544 ORTHO05D005504 3.9e-146 522.3 479 56.6
Os03g0168000 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 8.7e-146 521.2 447 58.8
Zm00001eb402450 Zea mays HOM05D004544 ORTHO05D005504 1.9e-140 503.4 446 57.0
CARHR170380 Cardamine hirsuta HOM05D004544 ORTHO05D005504 1.0e-138 497.7 290 89.3
Nitab4.5_0000468g0180 Nicotiana tabacum HOM05D004544 ORTHO05D005504 3.3e-137 492.7 405 61.5
Peaxi162Scf00245g00710 Petunia axillaris HOM05D004544 ORTHO05D005504 1.3e-136 490.7 454 55.7
Mapoly0020s0019 Marchantia polymorpha HOM05D004544 ORTHO05D005504 1.8e-135 486.9 449 57.0
Nitab4.5_0004502g0040 Nicotiana tabacum HOM05D004544 ORTHO05D005504 2.2e-133 479.9 384 63.0
CAN.G928.1 Capsicum annuum HOM05D004544 ORTHO05D005504 2.9e-133 479.6 433 55.4
Sopen10g026790 Solanum pennellii HOM05D004544 ORTHO05D005504 1.1e-132 477.6 448 53.6
FAN01G3148 Fragaria x ananassa HOM05D004544 ORTHO05D005504 2.8e-128 463.0 350 68.0
Pp3c17_11410 Physcomitrium patens HOM05D004544 ORTHO05D005504 3.1e-127 459.5 472 51.5
AagrBONN_evm.TU.Sc2ySwM_368.1671 Anthoceros agrestis HOM05D004544 ORTHO05D005504 4.1e-127 459.1 455 50.8
CAN.G1361.4 Capsicum annuum HOM05D004544 ORTHO05D005504 1.1e-121 441.0 458 50.2
Sopen01g033230 Solanum pennellii HOM05D004544 ORTHO05D005504 4.4e-121 439.1 461 50.1
Solyc01g073670.3 Solanum lycopersicum HOM05D004544 ORTHO05D005504 9.7e-121 438.0 461 49.9
SMO353G0186 Selaginella moellendorffii HOM05D004544 ORTHO05D005504 3.7e-120 436.0 397 55.4
FAN01G0042 Fragaria x ananassa HOM05D004544 ORTHO05D005504 2.4e-119 433.3 441 56.2
Atru.chr11.2714 Acer truncatum HOM05D004544 ORTHO05D005504 2.1e-115 420.2 462 52.4
QL04p001964 Quercus lobata HOM05D004544 ORTHO05D005504 4.7e-115 419.1 310 68.4
Peaxi162Scf00402g00940 Petunia axillaris HOM05D004544 ORTHO05D005504 1.4e-114 417.5 453 48.8
Prupe.2G001700 Prunus persica HOM05D004544 ORTHO05D005504 2.6e-110 403.3 321 65.7
PGSC0003DMG400007701 Solanum tuberosum HOM05D004544 ORTHO05D005504 2.1e-99 367.1 451 44.3
PGSC0003DMG400023279 Solanum tuberosum HOM05D004544 ORTHO05D005504 4.1e-95 352.8 392 49.5
SEGI_30614 Sequoiadendron giganteum HOM05D004544 ORTHO05D005504 2.0e-94 350.5 256 67.6
FAN06G4582 Fragaria x ananassa HOM05D004544 ORTHO05D005504 2.3e-85 320.5 265 63.0
PGSC0003DMG400028978 Solanum tuberosum HOM05D004544 ORTHO05D005504 3.1e-82 310.1 455 39.8
Sabra09G0016300 Salix brachista HOM05D004544 ORTHO05D005504 3.9e-77 293.1 318 53.8
MELO3C023501.2 Cucumis melo HOM05D004544 ORTHO05D005504 3.7e-72 276.6 452 40.0
Zm00001eb107640 Zea mays HOM05D004544 ORTHO05D005504 4.6e-70 269.6 195 67.7
QL04p001975 Quercus lobata HOM05D004544 ORTHO05D005504 3.1e-58 230.3 178 67.4
Migut.B01408 Erythranthe guttata HOM05D004544 ORTHO05D005504 2.1e-54 217.6 159 69.8
Migut.B01407 Erythranthe guttata HOM05D004544 ORTHO05D005504 2.5e-52 210.7 129 76.0
SEGI_18579 Sequoiadendron giganteum HOM05D004544 ORTHO05D005504 4.6e-46 189.9 195 50.8
Actinidia31716 Actinidia chinensis HOM05D004544 ORTHO05D005504 2.3e-45 187.6 152 60.5
Psat2g024040 Pisum sativum HOM05D004544 ORTHO05D005504 2.4e-39 167.5 126 65.9
MELO3C000237.2 Cucumis melo HOM05D004544 ORTHO05D005504 3.2e-39 167.2 122 70.5
Solyc01g089990.3 Solanum lycopersicum HOM05D004544 ORTHO05D005504 4.6e-30 136.7 94 70.2
Migut.B01409 Erythranthe guttata HOM05D004544 ORTHO05D005504 1.1e-28 132.1 137 54.0
Actinidia31717 Actinidia chinensis HOM05D004544 ORTHO05D005504 7.4e-28 129.4 120 60.8
Lj7A562T25 Lonicera japonica HOM05D004544 ORTHO05D005504 7.6e-25 119.4 112 53.6
Hund18992 Selenicereus undatus HOM05D004544 ORTHO05D005504 7.6e-25 119.4 74 70.3
QL04p001512 Quercus lobata HOM05D004544 ORTHO05D001929 1.3e-21 108.6 82 65.9
Os06g0628032 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 2.5e-20 104.4 99 50.5
Glyma.20G091501 Glycine max HOM05D004544 ORTHO05D005504 4.2e-15 87.0 58 75.9
QL04p001505 Quercus lobata HOM05D004544 ORTHO05D005504 6.7e-13 79.7 58 63.8
CAN.G913.7 Capsicum annuum HOM05D004544 ORTHO05D005504 4.3e-12 77.0 72 55.6
Haze_14723 Corylus avellana HOM05D004544 ORTHO05D005504 3.7e-11 73.9 44 79.5
Nitab4.5_0006570g0020 Nicotiana tabacum HOM05D004544 ORTHO05D005504 8.5e-08 62.8 42 71.4


User provided reference genes

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