Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g08189 Brassica carinata HOM05D004886 ORTHO05D005868 5.7e-92 340.9 171 100.0
A04p01810 Brassica napus HOM05D004886 ORTHO05D005868 3.2e-87 325.1 169 96.4
BraA04t15905Z Brassica rapa HOM05D004886 ORTHO05D005868 3.2e-87 325.1 169 96.4
BcaC02g10116 Brassica carinata HOM05D004886 ORTHO05D005868 1.3e-83 313.2 161 96.3
C04p32550 Brassica napus HOM05D004886 ORTHO05D005868 1.3e-83 313.2 161 96.3
BolC4t24818H Brassica oleracea HOM05D004886 ORTHO05D005868 1.3e-83 313.2 161 96.3
AT3G60150 Arabidopsis thaliana HOM05D004886 ORTHO05D005868 1.6e-81 306.2 169 90.5
Thhalv10006276m.g Eutrema salsugineum HOM05D004886 ORTHO05D005868 4.5e-81 304.7 169 89.9
Sp5g03060 Schrenkiella parvula HOM05D004886 ORTHO05D005868 4.5e-81 304.7 168 90.5
Carub.0005s2688 Capsella rubella HOM05D004886 ORTHO05D005868 2.5e-79 298.9 170 88.2
Aa31LG1G26120 Aethionema arabicum HOM05D004886 ORTHO05D005868 9.5e-79 297.0 169 85.8
Carub.0004s2709 Capsella rubella HOM05D004886 ORTHO05D005868 1.6e-78 296.2 169 87.6
AT2G44525 Arabidopsis thaliana HOM05D004886 ORTHO05D005868 2.8e-78 295.4 169 86.4
AL4G43550 Arabidopsis lyrata HOM05D004886 ORTHO05D005868 3.6e-78 295.0 169 86.4
Sp4g26620 Schrenkiella parvula HOM05D004886 ORTHO05D005868 4.7e-78 294.7 169 86.4
CARHR139740 Cardamine hirsuta HOM05D004886 ORTHO05D005868 1.4e-77 293.1 169 85.8
Thhalv10001659m.g Eutrema salsugineum HOM05D004886 ORTHO05D005868 1.4e-77 293.1 169 85.8
BcaB02g08829 Brassica carinata HOM05D004886 ORTHO05D005868 1.8e-77 292.7 169 85.2
BolC4t22182H Brassica oleracea HOM05D004886 ORTHO05D005868 5.2e-77 291.2 169 84.6
BcaC02g12300 Brassica carinata HOM05D004886 ORTHO05D005868 1.5e-76 289.7 169 84.0
C04p05420 Brassica napus HOM05D004886 ORTHO05D005868 1.5e-76 289.7 169 84.0
BraA05t19444Z Brassica rapa HOM05D004886 ORTHO05D005868 1.5e-76 289.7 169 84.0
A05p04680 Brassica napus HOM05D004886 ORTHO05D005868 2.6e-76 288.9 169 83.4
THA.LOC104817165 Tarenaya hassleriana HOM05D004886 ORTHO05D005868 1.7e-75 286.2 168 83.9
Oeu002885.1 Olea europaea HOM05D004886 ORTHO05D005868 9.5e-71 270.4 169 77.5
MSTRG.28124 Avicennia marina HOM05D004886 ORTHO05D005868 1.8e-69 266.2 169 74.0
Atru.chr5.18 Acer truncatum HOM05D004886 ORTHO05D005868 3.4e-68 261.9 169 75.1
CiPaw.14G014400 Carya illinoinensis HOM05D004886 ORTHO05D005868 1.3e-67 260.0 170 75.9
MELO3C022467.2 Cucumis melo HOM05D004886 ORTHO05D005868 1.3e-67 260.0 170 75.3
Migut.N01703 Erythranthe guttata HOM05D004886 ORTHO05D005868 1.7e-67 259.6 171 75.4
Ciclev10022551m.g Citrus clementina HOM05D004886 ORTHO05D005868 2.9e-67 258.8 170 74.1
Hma1.2p1_0021F.1_g014430 Hydrangea macrophylla HOM05D004886 ORTHO05D005868 2.9e-67 258.8 169 72.8
Nitab4.5_0001476g0110 Nicotiana tabacum HOM05D004886 ORTHO05D005868 3.7e-67 258.5 172 74.4
Nitab4.5_0004264g0010 Nicotiana tabacum HOM05D004886 ORTHO05D005868 8.3e-67 257.3 172 73.8
CiPaw.13G020500 Carya illinoinensis HOM05D004886 ORTHO05D005868 1.1e-66 256.9 171 75.4
ECA246G0884 Erigeron canadensis HOM05D004886 ORTHO05D005868 4.1e-66 255.0 169 74.0
Sed0007303 Sechium edule HOM05D004886 ORTHO05D005868 4.1e-66 255.0 170 74.1
Lsat_1_v5_gn_6_101400 Lactuca sativa HOM05D004886 ORTHO05D005868 7.0e-66 254.2 169 74.0
Potri.014G179500 Populus trichocarpa HOM05D004886 ORTHO05D005868 1.6e-65 253.1 167 74.9
Cc02_g25880 Coffea canephora HOM05D004886 ORTHO05D005868 2.0e-65 252.7 169 72.2
SalBow4G2359 Salvia bowleyana HOM05D004886 ORTHO05D005868 2.0e-65 252.7 167 71.9
Hund26556 Selenicereus undatus HOM05D004886 ORTHO05D005868 2.7e-65 252.3 171 73.1
unitig_85.g27219 Utricularia gibba HOM05D004886 ORTHO05D005868 2.7e-65 252.3 170 70.0
TWI59G0909 Tripterygium wilfordii HOM05D004886 ORTHO05D005868 3.5e-65 251.9 171 71.3
Gorai.012G082000 Gossypium raimondii HOM05D004886 ORTHO05D005868 1.0e-64 250.4 172 71.5
Rhsim07G0040800 Rhododendron simsii HOM05D004886 ORTHO05D005868 1.0e-64 250.4 171 71.9
Rhsim07G0041300 Rhododendron simsii HOM05D004886 ORTHO05D005868 1.0e-64 250.4 171 71.9
RhsimUnG0113600 Rhododendron simsii HOM05D004886 ORTHO05D005868 1.0e-64 250.4 171 71.9
HanXRQChr05g0162431 Helianthus annuus HOM05D004886 ORTHO05D005868 1.3e-64 250.0 169 71.6
Psat4g216480 Pisum sativum HOM05D004886 ORTHO05D005868 1.3e-64 250.0 172 72.1
Gohir.A05G333500 Gossypium hirsutum HOM05D004886 ORTHO05D005868 3.0e-64 248.8 172 70.3
Gohir.D04G073000 Gossypium hirsutum HOM05D004886 ORTHO05D005868 3.0e-64 248.8 172 71.5
GSVIVG01018384001 Vitis vinifera HOM05D004886 ORTHO05D005868 3.0e-64 248.8 169 71.0
Sopen01g035180 Solanum pennellii HOM05D004886 ORTHO05D005868 3.9e-64 248.4 170 70.6
vmacro13553 Vaccinium macrocarpon HOM05D004886 ORTHO05D005868 3.9e-64 248.4 171 71.3
CAN.G74.36 Capsicum annuum HOM05D004886 ORTHO05D005868 5.0e-64 248.1 169 71.6
Nn1g07674 Nelumbo nucifera HOM05D004886 ORTHO05D005868 5.0e-64 248.1 168 71.4
TWI14G0309 Tripterygium wilfordii HOM05D004886 ORTHO05D005868 5.0e-64 248.1 171 69.0
Actinidia05803 Actinidia chinensis HOM05D004886 ORTHO05D005868 6.6e-64 247.7 170 71.8
COL.COLO4_20817 Corchorus olitorius HOM05D004886 ORTHO05D005868 8.6e-64 247.3 173 70.5
Peaxi162Scf01124g00012 Petunia axillaris HOM05D004886 ORTHO05D005868 8.6e-64 247.3 168 70.8
Duzib128G0726 Durio zibethinus HOM05D004886 ORTHO05D005868 1.1e-63 246.9 172 72.1
Solyc01g088350.4 Solanum lycopersicum HOM05D004886 ORTHO05D005868 1.1e-63 246.9 170 70.0
Medtr8g009670 Medicago truncatula HOM05D004886 ORTHO05D005868 1.5e-63 246.5 176 70.5
Aqoxy3G02476 Aquilegia oxysepala HOM05D004886 ORTHO05D005868 1.9e-63 246.1 171 71.3
CsaV3_6G004620 Cucumis sativus L. HOM05D004886 ORTHO05D005868 1.9e-63 246.1 199 64.8
CANSAT21G0345 Cannabis sativa HOM05D004886 ORTHO05D005868 2.5e-63 245.7 179 68.2
CsaV3_6G021750 Cucumis sativus L. HOM05D004886 ORTHO05D005868 5.6e-63 244.6 199 64.3
CsaV3_6G037000 Cucumis sativus L. HOM05D004886 ORTHO05D005868 5.6e-63 244.6 199 64.3
TPR.G17348 Trifolium pratense HOM05D004886 ORTHO05D005868 7.3e-63 244.2 179 68.7
VMungo0331G0020 Vigna mungo HOM05D004886 ORTHO05D005868 9.5e-63 243.8 173 69.4
Glyma.03G100700 Glycine max HOM05D004886 ORTHO05D005868 1.6e-62 243.0 173 69.9
MD07G1082600 Malus domestica HOM05D004886 ORTHO05D005868 1.6e-62 243.0 171 69.0
Phvul.010G040200 Phaseolus vulgaris HOM05D004886 ORTHO05D005868 2.8e-62 242.3 171 69.6
CSS0044670 Camellia sinensis var. sinensis HOM05D004886 ORTHO05D005868 3.6e-62 241.9 176 68.8
QL04p024857 Quercus lobata HOM05D004886 ORTHO05D005868 3.6e-62 241.9 173 69.9
arahy.Tifrunner.gnm1.ann1.FT2T1Y Arachis hypogaea HOM05D004886 ORTHO05D005868 6.2e-62 241.1 171 69.6
Cfa011001 Carpinus fangiana HOM05D002067 ORTHO05D001060 6.2e-62 241.1 157 74.5
EL10Ac8g19580 Beta vulgaris HOM05D004886 ORTHO05D005868 1.8e-61 239.6 171 67.8
Lalb_Chr07g0194931 Lupinus albus HOM05D004886 ORTHO05D005868 2.3e-61 239.2 173 67.1
Eucgr.D01136 Eucalyptus grandis HOM05D004886 ORTHO05D005868 3.1e-61 238.8 173 69.9
TAR375G0952 Trochodendron aralioides HOM05D004886 ORTHO05D005868 4.0e-61 238.4 157 72.6
Prupe.2G110500 Prunus persica HOM05D004886 ORTHO05D005868 5.2e-61 238.0 163 70.6
DCAR_015764 Daucus carota HOM05D004886 ORTHO05D005868 8.9e-61 237.3 206 60.2
Manes.05G060800 Manihot esculenta HOM05D004886 ORTHO05D005868 8.9e-61 237.3 166 68.7
AUR62034033 Chenopodium quinoa HOM05D004886 ORTHO05D005868 1.2e-60 236.9 173 67.6
MBI04_g13864_MAGBIO Magnolia biondii HOM05D004886 ORTHO05D005868 1.5e-60 236.5 168 69.0
arahy.Tifrunner.gnm1.ann1.U68WY7 Arachis hypogaea HOM05D004886 ORTHO05D005868 2.0e-60 236.1 171 69.0
HPP92_003510 Vanilla planifolia HOM05D004886 ORTHO05D005868 2.6e-60 235.7 166 66.3
PGR044G2350 Punica granatum HOM05D004886 ORTHO05D005868 4.4e-60 235.0 161 72.0
Lj3g0025670 Lotus japonicus HOM05D004886 ORTHO05D005868 5.8e-60 234.6 161 70.2
FvH4_1g27010 Fragaria vesca HOM05D004886 ORTHO05D005868 9.8e-60 233.8 159 72.3
RcHm_v2.0_Chr3g0487321 Rosa chinensis HOM05D004886 ORTHO05D005868 9.8e-60 233.8 159 71.1
FAN28G1372 Fragaria x ananassa HOM05D004886 ORTHO05D005868 1.3e-59 233.4 159 71.1
Prupe.3G009000 Prunus persica HOM05D004886 ORTHO05D005868 1.3e-59 233.4 170 67.6
FAN23G1419 Fragaria x ananassa HOM05D004886 ORTHO05D005868 1.7e-59 233.0 159 70.4
Thecc.10G000600 Theobroma cacao HOM05D004886 ORTHO05D005868 2.2e-59 232.6 194 63.4
FAN26G2919 Fragaria x ananassa HOM05D004886 ORTHO05D005868 4.9e-59 231.5 159 70.4
MD09G1285000 Malus domestica HOM05D004886 ORTHO05D005868 1.4e-58 229.9 181 64.6
SGA_v2.0_scaffold77G25231 Striga asiatica HOM05D000012 ORTHO05D001060 4.1e-58 228.4 225 52.4
PSO782G3769 Papaver somniferum HOM05D004886 ORTHO05D005868 1.0e-56 223.8 171 64.3
Haze_02935 Corylus avellana HOM05D004886 ORTHO05D005868 1.7e-56 223.0 174 64.9
Zm00001eb024270 Zea mays HOM05D004886 ORTHO05D005868 1.7e-56 223.0 172 62.2
FAN19G1058 Fragaria x ananassa HOM05D004886 ORTHO05D005868 3.0e-56 222.2 159 70.4
PSO063G1771 Papaver somniferum HOM05D004886 ORTHO05D005868 8.6e-56 220.7 171 63.7
Zm00001eb390620 Zea mays HOM05D004886 ORTHO05D005868 8.6e-56 220.7 171 62.0
CDE11G0764 Ceratophyllum demersum HOM05D004886 ORTHO05D005868 7.3e-55 217.6 167 63.5
CsaV3_6G006530 Cucumis sativus L. HOM05D004886 ORTHO05D005868 7.3e-55 217.6 137 74.5
Sed0018381 Sechium edule HOM05D004886 ORTHO05D005868 1.6e-54 216.5 187 63.1
Dinv44001 Davidia involucrata HOM05D004886 ORTHO05D005868 6.2e-54 214.5 142 73.2
vmacro21096 Vaccinium macrocarpon HOM05D004886 ORTHO05D005868 8.1e-54 214.2 217 55.3
CsaV3_UNG176370 Cucumis sativus L. HOM05D004886 ORTHO05D005868 2.3e-53 212.6 208 56.7
Sabra14G0137800 Salix brachista HOM05D004886 ORTHO05D005868 2.2e-51 206.1 260 45.4
Lj9C547T8 Lonicera japonica HOM05D004886 ORTHO05D005868 7.8e-49 197.6 184 59.8
Ah.09g232340 Amaranthus hybridus HOM05D004886 ORTHO05D005868 8.6e-48 194.1 170 61.8
Actinidia30969 Actinidia chinensis HOM05D004886 ORTHO05D005868 1.5e-44 183.3 118 71.2
HPP92_003514 Vanilla planifolia HOM05D004886 ORTHO05D005868 4.4e-44 181.8 166 53.6
ClCG06G000740 Citrullus lanatus HOM05D004886 ORTHO05D005868 2.9e-43 179.1 170 58.2
CAN.G1480.6 Capsicum annuum HOM05D004886 ORTHO05D005868 9.3e-42 174.1 110 70.9
Aa31LG10G14300 Aethionema arabicum HOM05D004886 ORTHO05D005868 3.3e-39 165.6 116 75.9
Cpa.g.sc587.3 Carica papaya HOM05D004886 ORTHO05D005868 1.1e-37 160.6 107 72.9
Nn1g07677 Nelumbo nucifera HOM05D004886 ORTHO05D005868 2.2e-35 152.9 107 70.1
Dinv43568 Davidia involucrata HOM05D004886 ORTHO05D005868 4.2e-34 148.7 96 76.0
Sabra14G0139700 Salix brachista HOM05D004886 ORTHO05D005868 7.1e-34 147.9 103 68.9
Pp3c12_4990 Physcomitrium patens HOM05D004886 ORTHO05D005868 2.1e-33 146.4 141 46.8
SGA_v2.0_scaffold95G28731 Striga asiatica HOM05D004886 ORTHO05D005868 2.1e-33 146.4 113 58.4
SHI13674 Sapria himalayana HOM05D004886 ORTHO05D005868 2.7e-33 146.0 113 56.6
Sc23g0004110 Simmondsia chinensis HOM05D004886 ORTHO05D005868 2.7e-33 146.0 119 65.5
Mapoly0033s0133 Marchantia polymorpha HOM05D004886 ORTHO05D005868 1.6e-30 136.7 140 45.0
CARHR170460 Cardamine hirsuta HOM05D004886 ORTHO05D005868 2.8e-30 136.0 82 86.6
BraA05t19447Z Brassica rapa HOM05D004886 ORTHO05D005868 1.8e-29 133.3 77 81.8
BraA05t19448Z Brassica rapa HOM05D004886 ORTHO05D005868 1.8e-29 133.3 77 81.8
Os10g0571100 Oryza sativa ssp. japonica HOM05D004886 ORTHO05D005868 4.0e-29 132.1 117 59.0
AUR62038597 Chenopodium quinoa HOM05D004886 ORTHO05D005868 9.9e-28 127.5 100 65.0
MD04G1140000 Malus domestica HOM05D004886 ORTHO05D005868 4.6e-25 118.6 105 61.0
A05p04700 Brassica napus HOM05D004886 ORTHO05D005868 2.1e-22 109.8 62 83.9
Sabra14G0139800 Salix brachista HOM05D004886 ORTHO05D005868 2.6e-20 102.8 61 72.1
Cpa.g.c35192.2 Carica papaya HOM05D004886 ORTHO05D005868 5.8e-20 101.7 61 75.4
CsaV3_5G024660 Cucumis sativus L. HOM05D004886 ORTHO05D005868 1.3e-19 100.5 96 56.2
Cre12.g496800 Chlamydomonas reinhardtii HOM05D004886 ORTHO05D005868 3.8e-19 99.0 101 42.6
AagrBONN_evm.TU.Sc2ySwM_344.1568 Anthoceros agrestis HOM05D004886 ORTHO05D005868 6.5e-19 98.2 112 37.5
Os03g0590700 Oryza sativa ssp. japonica HOM05D004886 ORTHO05D005868 8.4e-19 97.8 62 71.0
SMO364G0857 Selaginella moellendorffii HOM05D004886 ORTHO05D005868 8.4e-19 97.8 104 41.3
CsaV3_3G022410 Cucumis sativus L. HOM05D004886 ORTHO05D005868 2.5e-18 96.3 93 54.8
ATR0049G020 Amborella trichopoda HOM05D004886 ORTHO05D005868 4.6e-17 92.0 62 62.9
SEGI_24442 Sequoiadendron giganteum HOM05D004886 ORTHO05D005868 5.7e-15 85.1 88 50.0
MCO06G183 Micromonas commoda HOM05D004886 ORTHO05D005868 3.7e-14 82.4 106 37.7
PRCOL_00001209 Prasinoderma coloniale HOM05D004886 ORTHO05D005868 5.3e-13 78.6 136 36.0
Cc04_g01570 Coffea canephora HOM05D004886 ORTHO05D005868 1.2e-12 77.4 50 66.0
FAN10G0867 Fragaria x ananassa HOM05D004886 ORTHO05D005868 1.7e-11 73.6 104 41.3
SalBow2G0716 Salvia bowleyana HOM05D000282 ORTHO05D000272 1.6e-06 57.0 32 84.4


User provided reference genes

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