Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g08172 Brassica carinata HOM05D004531 ORTHO05D005484 2.1e-121 439.1 229 100.0
BcaC02g10151 Brassica carinata HOM05D004531 ORTHO05D005484 5.6e-119 431.0 229 96.5
C04p32210 Brassica napus HOM05D004531 ORTHO05D005484 2.1e-118 429.1 229 96.1
BraA09t40693Z Brassica rapa HOM05D004531 ORTHO05D005484 8.1e-118 427.2 229 95.6
BolC8t51130H Brassica oleracea HOM05D004531 ORTHO05D005484 1.1e-117 426.8 229 95.6
A09p52640 Brassica napus HOM05D004531 ORTHO05D005484 2.4e-117 425.6 229 95.2
C08p35370 Brassica napus HOM05D004531 ORTHO05D005484 3.1e-117 425.2 229 95.2
A04p01660 Brassica napus HOM05D004531 ORTHO05D005484 4.0e-117 424.9 229 95.6
BcaC07g42771 Brassica carinata HOM05D004531 ORTHO05D005484 2.2e-115 419.1 229 94.3
Sp5g02860 Schrenkiella parvula HOM05D004531 ORTHO05D005484 3.2e-114 415.2 229 93.9
SpUn0080_0040 Schrenkiella parvula HOM05D004531 ORTHO05D005484 3.2e-114 415.2 229 93.9
Thhalv10006222m.g Eutrema salsugineum HOM05D004531 ORTHO05D005484 1.3e-107 393.3 229 89.5
Carub.0005s2711 Capsella rubella HOM05D004531 ORTHO05D005484 2.9e-107 392.1 229 88.2
AL5G42600 Arabidopsis lyrata HOM05D004531 ORTHO05D005484 2.1e-105 386.0 229 85.6
AT3G60360 Arabidopsis thaliana HOM05D004531 ORTHO05D005484 6.7e-104 380.9 229 83.8
CARHR170680 Cardamine hirsuta HOM05D004531 ORTHO05D005484 3.7e-102 375.2 229 83.4
Aa31LG3G11700 Aethionema arabicum HOM05D004531 ORTHO05D005484 4.3e-87 325.1 231 72.3
THA.LOC104820245 Tarenaya hassleriana HOM05D004531 ORTHO05D005484 2.2e-83 312.8 232 69.4
CSS0023033 Camellia sinensis var. sinensis HOM05D004531 ORTHO05D005484 2.9e-83 312.4 230 70.0
CAN.G641.37 Capsicum annuum HOM05D004531 ORTHO05D005484 4.2e-82 308.5 230 67.8
Atru.chr2.471 Acer truncatum HOM05D004531 ORTHO05D005484 2.1e-81 306.2 230 68.3
Manes.11G057800 Manihot esculenta HOM05D004531 ORTHO05D005484 2.1e-81 306.2 230 67.8
Eucgr.A02172 Eucalyptus grandis HOM05D004531 ORTHO05D005484 2.7e-81 305.8 229 66.4
Lalb_Chr13g0291551 Lupinus albus HOM05D004531 ORTHO05D005484 3.6e-81 305.4 230 67.0
PGR042G0151 Punica granatum HOM05D004531 ORTHO05D005484 4.7e-81 305.1 231 68.4
Glyma.08G077300 Glycine max HOM05D004531 ORTHO05D005484 1.4e-80 303.5 230 66.5
Nitab4.5_0010736g0010 Nicotiana tabacum HOM05D004531 ORTHO05D005484 1.8e-80 303.1 230 66.1
Potri.016G024300 Populus trichocarpa HOM05D004531 ORTHO05D005484 1.8e-80 303.1 230 66.1
Cc06_g18540 Coffea canephora HOM05D004531 ORTHO05D005484 6.7e-80 301.2 230 66.5
MELO3C008757.2 Cucumis melo HOM05D004531 ORTHO05D005484 6.7e-80 301.2 229 65.1
GSVIVG01029836001 Vitis vinifera HOM05D004531 ORTHO05D005484 6.7e-80 301.2 230 66.1
vmacro07599 Vaccinium macrocarpon HOM05D004531 ORTHO05D005484 8.8e-80 300.8 230 67.4
Nitab4.5_0000646g0260 Nicotiana tabacum HOM05D004531 ORTHO05D005484 1.1e-79 300.4 230 65.2
PGSC0003DMG400008162 Solanum tuberosum HOM05D004531 ORTHO05D005484 2.0e-79 299.7 230 65.2
Thecc.05G127100 Theobroma cacao HOM05D004531 ORTHO05D005484 2.0e-79 299.7 230 63.5
Nitab4.5_0000082g0350 Nicotiana tabacum HOM05D004531 ORTHO05D005484 2.6e-79 299.3 230 65.7
Sed0018245 Sechium edule HOM05D004531 ORTHO05D005484 2.6e-79 299.3 230 65.2
CsaV3_2G009570 Cucumis sativus L. HOM05D004531 ORTHO05D005484 3.3e-79 298.9 229 65.1
Ciclev10012657m.g Citrus clementina HOM05D004531 ORTHO05D005484 4.4e-79 298.5 230 67.4
Medtr4g094380 Medicago truncatula HOM05D004531 ORTHO05D005484 5.7e-79 298.1 230 64.8
Gohir.D10G227700 Gossypium hirsutum HOM05D004531 ORTHO05D005484 7.4e-79 297.7 231 65.8
Sabra16G0021800 Salix brachista HOM05D004531 ORTHO05D005484 9.7e-79 297.4 230 65.2
Prupe.4G200900 Prunus persica HOM05D004531 ORTHO05D005484 1.3e-78 297.0 229 64.6
VMungo0251G1523 Vigna mungo HOM05D004531 ORTHO05D005484 1.3e-78 297.0 230 64.8
Duzib248G1029 Durio zibethinus HOM05D004531 ORTHO05D005484 1.7e-78 296.6 230 64.8
Prupe.8G106900 Prunus persica HOM05D004531 ORTHO05D005484 1.7e-78 296.6 229 64.2
ClCG11G010890 Citrullus lanatus HOM05D004531 ORTHO05D005484 2.2e-78 296.2 229 63.8
Hma1.2p1_0341F.1_g130530 Hydrangea macrophylla HOM05D004531 ORTHO05D005484 2.2e-78 296.2 230 65.2
Migut.J01686 Erythranthe guttata HOM05D004531 ORTHO05D005484 4.8e-78 295.0 232 65.5
Lj7A661T48 Lonicera japonica HOM05D004531 ORTHO05D005484 4.8e-78 295.0 230 66.1
SalBow6G4182 Salvia bowleyana HOM05D004531 ORTHO05D005484 4.8e-78 295.0 230 67.0
TWI77G0822 Tripterygium wilfordii HOM05D004531 ORTHO05D005484 6.3e-78 294.7 230 64.8
DCAR_020613 Daucus carota HOM05D004531 ORTHO05D005484 1.1e-77 293.9 229 64.6
Phvul.002G203400 Phaseolus vulgaris HOM05D004531 ORTHO05D005484 1.1e-77 293.9 230 66.5
Solyc10g079430.2 Solanum lycopersicum HOM05D004531 ORTHO05D005484 1.1e-77 293.9 230 63.5
Dinv37065 Davidia involucrata HOM05D004531 ORTHO05D005484 1.4e-77 293.5 230 66.1
RcHm_v2.0_Chr5g0037141 Rosa chinensis HOM05D004531 ORTHO05D005484 1.4e-77 293.5 230 64.8
Gorai.011G260100 Gossypium raimondii HOM05D004531 ORTHO05D005484 3.1e-77 292.4 230 64.3
Glyma.05G122300 Glycine max HOM05D004531 ORTHO05D005484 5.3e-77 291.6 230 65.7
Gohir.A06G180300 Gossypium hirsutum HOM05D004531 ORTHO05D005484 7.0e-77 291.2 230 64.8
Ciclev10010418m.g Citrus clementina HOM05D004531 ORTHO05D005484 1.2e-76 290.4 230 64.3
MSTRG.6389 Avicennia marina HOM05D004531 ORTHO05D005484 4.5e-76 288.5 230 63.5
Nn5g28465 Nelumbo nucifera HOM05D004531 ORTHO05D005484 4.5e-76 288.5 230 61.7
TPR.G23804 Trifolium pratense HOM05D004531 ORTHO05D005484 5.9e-76 288.1 231 65.4
CANSAT56G3883 Cannabis sativa HOM05D004531 ORTHO05D005484 7.7e-76 287.7 230 63.0
COL.COLO4_07074 Corchorus olitorius HOM05D004531 ORTHO05D005484 1.3e-75 287.0 230 61.7
arahy.Tifrunner.gnm1.ann1.8UG22X Arachis hypogaea HOM05D004531 ORTHO05D005484 1.7e-75 286.6 232 62.5
ECA238G4589 Erigeron canadensis HOM05D004531 ORTHO05D005484 2.2e-75 286.2 229 62.9
Psat7g095600 Pisum sativum HOM05D004531 ORTHO05D005484 2.2e-75 286.2 230 64.3
arahy.Tifrunner.gnm1.ann1.35U2WI Arachis hypogaea HOM05D004531 ORTHO05D005484 2.9e-75 285.8 232 62.1
SGA_v2.0_scaffold69G23138 Striga asiatica HOM05D004531 ORTHO05D005484 2.9e-75 285.8 232 64.7
MD11G1228700 Malus domestica HOM05D004531 ORTHO05D005484 6.5e-75 284.6 228 63.6
Ca_18320_v3 Cicer arietinum L. HOM05D004531 ORTHO05D005484 8.5e-75 284.3 230 63.5
Lj6g0006960 Lotus japonicus HOM05D004531 ORTHO05D005484 8.5e-75 284.3 230 62.6
Os01g0810000 Oryza sativa ssp. japonica HOM05D004531 ORTHO05D005484 1.4e-74 283.5 230 61.7
MD15G1425000 Malus domestica HOM05D004531 ORTHO05D005484 1.9e-74 283.1 229 63.3
FvH4_3g21660 Fragaria vesca HOM05D004531 ORTHO05D005484 5.5e-74 281.6 230 62.6
MBI13_g30229_MAGBIO Magnolia biondii HOM05D004531 ORTHO05D005484 5.5e-74 281.6 238 61.3
RhsimUnG0021500 Rhododendron simsii HOM05D004531 ORTHO05D005484 5.5e-74 281.6 254 59.8
Sabra16G0030200 Salix brachista HOM05D004531 ORTHO05D005484 9.4e-74 280.8 220 64.5
HanXRQChr14g0437741 Helianthus annuus HOM05D004531 ORTHO05D005484 1.6e-73 280.0 230 62.2
CiPaw.08G117500 Carya illinoinensis HOM05D004531 ORTHO05D005484 2.1e-73 279.6 230 61.3
PSO210G4508 Papaver somniferum HOM05D004531 ORTHO05D005484 2.1e-73 279.6 229 64.2
Sc15g0002670 Simmondsia chinensis HOM05D004531 ORTHO05D005484 2.7e-73 279.3 230 60.9
Peaxi162Scf00002g10416 Petunia axillaris HOM05D004531 ORTHO05D005484 1.0e-72 277.3 263 57.0
unitig_746.g26802 Utricularia gibba HOM05D004531 ORTHO05D005484 1.8e-72 276.6 230 62.2
Aqoxy2G03324 Aquilegia oxysepala HOM05D004531 ORTHO05D005484 3.0e-72 275.8 230 63.0
HPP92_027481 Vanilla planifolia HOM05D004531 ORTHO05D005484 3.0e-72 275.8 230 62.6
AUR62022353 Chenopodium quinoa HOM05D004531 ORTHO05D005484 5.2e-72 275.0 230 59.1
arahy.Tifrunner.gnm1.ann1.JM9XLQ Arachis hypogaea HOM05D004531 ORTHO05D005484 8.8e-72 274.2 232 61.2
TAR374G0360 Trochodendron aralioides HOM05D004531 ORTHO05D005484 8.8e-72 274.2 231 60.6
PSO210G2223 Papaver somniferum HOM05D004531 ORTHO05D005484 1.5e-71 273.5 229 62.9
AUR62034356 Chenopodium quinoa HOM05D004531 ORTHO05D005484 2.0e-71 273.1 230 60.0
EL10Ac9g22646 Beta vulgaris HOM05D004531 ORTHO05D005484 5.7e-71 271.6 230 59.6
MD11G1228500 Malus domestica HOM05D004531 ORTHO05D005484 5.7e-71 271.6 249 57.8
FAN11G1137 Fragaria x ananassa HOM05D004531 ORTHO05D005484 7.4e-71 271.2 252 57.5
EL10Ac1g01672 Beta vulgaris HOM05D004531 ORTHO05D005484 1.7e-70 270.0 230 59.6
Lsat_1_v5_gn_2_52561 Lactuca sativa HOM05D004531 ORTHO05D005484 3.7e-70 268.9 220 62.7
Cpa.g.sc115.24 Carica papaya HOM05D004531 ORTHO05D005484 9.1e-69 264.2 233 58.8
MELO3C023654.2 Cucumis melo HOM05D004531 ORTHO05D005484 7.7e-68 261.2 236 58.1
ClCG09G010350 Citrullus lanatus HOM05D004531 ORTHO05D005484 8.5e-67 257.7 220 60.9
Gohir.A08G129500 Gossypium hirsutum HOM05D004531 ORTHO05D005484 5.5e-66 255.0 230 59.6
Carub.0007s2695 Capsella rubella HOM05D004531 ORTHO05D005484 3.6e-65 252.3 175 76.0
BraA04t15890Z Brassica rapa HOM05D004531 ORTHO05D005484 8.0e-65 251.1 138 94.2
Haze_23723 Corylus avellana HOM05D004531 ORTHO05D005484 2.6e-63 246.1 307 47.9
SGA_v2.0_scaffold105G30334 Striga asiatica HOM05D004531 ORTHO05D005484 7.5e-63 244.6 199 61.3
RhsimUnG0117400 Rhododendron simsii HOM05D004531 ORTHO05D005484 1.7e-62 243.4 318 46.5
Zm00001eb369240 Zea mays HOM05D004531 ORTHO05D005484 1.1e-61 240.7 214 57.9
QL09p051267 Quercus lobata HOM05D004531 ORTHO05D005484 4.1e-61 238.8 360 41.7
CsaV3_7G024290 Cucumis sativus L. HOM05D004531 ORTHO05D005484 3.8e-59 232.3 230 55.2
Mapoly0074s0052 Marchantia polymorpha HOM05D004531 ORTHO05D005484 1.7e-54 216.9 229 54.6
CDE07G2032 Ceratophyllum demersum HOM05D004531 ORTHO05D005484 8.3e-54 214.5 179 60.3
SMO367G0994 Selaginella moellendorffii HOM05D004531 ORTHO05D005484 1.4e-53 213.8 230 48.7
TAR636G0629 Trochodendron aralioides HOM05D004531 ORTHO05D005484 3.1e-53 212.6 181 60.2
AagrBONN_evm.TU.Sc2ySwM_228.1021 Anthoceros agrestis HOM05D004531 ORTHO05D005484 2.7e-52 209.5 231 49.8
Duzib052G0496 Durio zibethinus HOM05D004531 ORTHO05D005484 5.0e-51 205.3 166 61.4
Nitab4.5_0002805g0150 Nicotiana tabacum HOM05D004531 ORTHO05D005484 9.5e-50 201.1 164 61.6
Ah.13g077510 Amaranthus hybridus HOM05D004531 ORTHO05D005484 1.8e-48 196.8 228 50.4
Sopen10g030070 Solanum pennellii HOM05D004531 ORTHO05D005484 4.0e-48 195.7 164 59.8
Pp3c3_27620 Physcomitrium patens HOM05D004531 ORTHO05D005484 8.3e-46 188.0 234 46.6
Hund15691 Selenicereus undatus HOM05D004531 ORTHO05D005484 5.4e-45 185.3 141 63.1
FAN16G0044 Fragaria x ananassa HOM05D004531 ORTHO05D005484 7.0e-45 184.9 164 57.9
Cfa002196 Carpinus fangiana HOM05D004531 ORTHO05D005484 9.2e-45 184.5 140 64.3
ATR1096G053 Amborella trichopoda HOM05D004531 ORTHO05D005484 1.0e-43 181.0 138 64.5
Hund22289 Selenicereus undatus HOM05D004531 ORTHO05D005484 1.0e-43 181.0 282 39.0
Oeu020249.1 Olea europaea HOM05D004531 ORTHO05D005484 1.0e-40 171.0 110 74.5
Dinv14546 Davidia involucrata HOM05D004531 ORTHO05D005484 1.4e-40 170.6 117 69.2
FAN21G3808 Fragaria x ananassa HOM05D004531 ORTHO05D005484 2.3e-40 169.9 166 53.0
MCO16G699 Micromonas commoda HOM05D004531 ORTHO05D005484 5.8e-39 165.2 241 44.0
CBR_g26482 Chara braunii HOM05D004531 ORTHO05D005484 9.2e-37 157.9 243 41.2
CDE07G0548 Ceratophyllum demersum HOM05D004531 ORTHO05D005484 9.5e-34 147.9 139 51.8
PRCOL_00003072 Prasinoderma coloniale HOM05D004531 ORTHO05D005484 6.8e-32 141.7 266 38.7
Pp3s222_10 Physcomitrium patens HOM05D004531 ORTHO05D005484 4.4e-31 139.0 156 48.7
Ca_08745_v3 Cicer arietinum L. HOM05D004531 ORTHO05D005484 2.9e-30 136.3 216 38.9
Cre13.g573050 Chlamydomonas reinhardtii HOM05D004531 ORTHO05D005484 1.4e-29 134.0 292 34.9
FAN25G0149 Fragaria x ananassa HOM05D004531 ORTHO05D005484 7.3e-26 121.7 135 48.1
Potri.006G026002 Populus trichocarpa HOM05D004531 ORTHO05D005484 1.4e-24 117.5 90 63.3
MD11G1228400 Malus domestica HOM05D004531 ORTHO05D005484 2.9e-22 109.8 125 49.6
Psat3g051800 Pisum sativum HOM05D004531 ORTHO05D005484 2.9e-22 109.8 110 50.0
THA.LOC104802556 Tarenaya hassleriana HOM05D004531 ORTHO05D005484 4.6e-20 102.4 71 67.6
CSS0027948 Camellia sinensis var. sinensis HOM05D004531 ORTHO05D005484 1.1e-18 97.8 102 55.9
Zm00001eb262530 Zea mays HOM05D000031 ORTHO05D445172 2.4e-16 90.1 71 54.9
Zm00001eb180730 Zea mays HOM05D004531 ORTHO05D005484 5.2e-16 89.0 63 61.9
PSO210G0815 Papaver somniferum HOM05D004531 ORTHO05D005484 8.9e-16 88.2 80 62.5
CDE07G1261 Ceratophyllum demersum HOM05D004531 ORTHO05D005484 5.8e-15 85.5 66 57.6
TWI38G0613 Tripterygium wilfordii HOM05D004531 ORTHO05D005484 3.2e-13 79.7 105 47.6
CARHR037650 Cardamine hirsuta HOM05D004531 ORTHO05D005484 1.2e-12 77.8 53 73.6
Cfa023089 Carpinus fangiana HOM05D004531 ORTHO05D005484 1.2e-12 77.8 137 37.2
SalBow8G3341 Salvia bowleyana HOM05D004531 ORTHO05D005484 2.7e-12 76.6 87 52.9
ATR1096G046 Amborella trichopoda HOM05D004531 ORTHO05D005484 3.5e-12 76.3 65 55.4
Gohir.A06G180400 Gossypium hirsutum HOM05D004531 ORTHO05D005484 3.5e-12 76.3 54 66.7
Haze_26248 Corylus avellana HOM05D004531 ORTHO05D005484 3.9e-11 72.8 116 38.8
ECA238G1549 Erigeron canadensis HOM05D004531 ORTHO05D005484 3.9e-11 72.8 58 56.9
Oeu059360.1 Olea europaea HOM05D004531 ORTHO05D005484 3.1e-08 63.2 91 38.5
Oeu059364.1 Olea europaea HOM05D004531 ORTHO05D290784 7.6e-07 58.5 61 45.9
BcaB01g06120 Brassica carinata HOM05D006996 ORTHO05D008961 1.7e-06 57.4 58 56.9
Oeu059357.1 Olea europaea HOM05D004531 ORTHO05D005484 6.4e-06 55.5 41 63.4


User provided reference genes

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