Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g08143 Brassica carinata HOM05D000590 ORTHO05D006825 1.5e-200 702.6 349 100.0
BraA04t15812Z Brassica rapa HOM05D000590 ORTHO05D006825 7.9e-173 610.5 353 88.7
Thhalv10006430m.g Eutrema salsugineum HOM05D000590 ORTHO05D006825 1.0e-159 567.0 360 78.3
BolC6t37952H Brassica oleracea HOM05D000590 ORTHO05D006825 1.0e-156 557.0 363 77.4
A04p00950 Brassica napus HOM05D000590 ORTHO05D006825 3.0e-156 555.4 350 82.9
AL5G44280 Arabidopsis lyrata HOM05D000590 ORTHO05D006825 1.3e-154 550.1 360 75.8
CARHR172060 Cardamine hirsuta HOM05D000590 ORTHO05D006825 4.1e-153 545.0 360 76.1
AT3G61730 Arabidopsis thaliana HOM05D000590 ORTHO05D006825 5.5e-150 534.6 360 73.9
AT5G36000 Arabidopsis thaliana HOM05D000590 ORTHO05D006825 2.4e-145 519.2 356 71.6
BraA07t30209Z Brassica rapa HOM05D004730 ORTHO05D005705 2.7e-141 505.8 335 76.4
THA.LOC104817360 Tarenaya hassleriana HOM05D000590 ORTHO05D006825 3.0e-140 502.3 335 73.4
C06p27910 Brassica napus HOM05D000590 ORTHO05D006825 6.7e-140 501.1 357 71.7
Aa31LG10G15730 Aethionema arabicum HOM05D000590 ORTHO05D001713 5.7e-139 498.0 349 72.2
THA.LOC104802069 Tarenaya hassleriana HOM05D000590 ORTHO05D006825 1.0e-135 487.3 335 71.3
Sp5g01640 Schrenkiella parvula HOM05D000590 ORTHO05D006825 1.3e-135 486.9 360 70.8
C06p27850 Brassica napus HOM05D004730 ORTHO05D006825 4.2e-134 481.9 335 73.7
A07p25690 Brassica napus HOM05D004730 ORTHO05D005705 2.6e-131 472.6 330 74.2
BcaB02g08144 Brassica carinata HOM05D000590 ORTHO05D006825 4.5e-128 461.8 320 75.0
Carub.0005s2847 Capsella rubella HOM05D000590 ORTHO05D006825 1.6e-120 436.8 292 73.6
TWI14G0815 Tripterygium wilfordii HOM05D000590 ORTHO05D006825 1.5e-115 420.2 302 63.9
Haze_15659 Corylus avellana HOM05D000590 ORTHO05D006825 9.2e-113 411.0 323 61.9
TWI59G0780 Tripterygium wilfordii HOM05D000590 ORTHO05D006825 9.2e-113 411.0 293 64.2
Peaxi162Scf00786g00323 Petunia axillaris HOM05D000590 ORTHO05D006825 5.9e-112 408.3 290 63.1
Phvul.010G113800 Phaseolus vulgaris HOM05D000590 ORTHO05D006825 7.8e-112 407.9 322 59.6
Duzib133G1228 Durio zibethinus HOM05D000590 ORTHO05D006825 1.3e-111 407.1 314 61.1
Gohir.D08G044900 Gossypium hirsutum HOM05D000590 ORTHO05D006825 1.7e-111 406.8 311 61.1
Solyc01g095870.3 Solanum lycopersicum HOM05D000590 ORTHO05D006825 1.7e-111 406.8 293 63.5
Sopen01g039610 Solanum pennellii HOM05D000590 ORTHO05D006825 1.7e-111 406.8 293 63.5
Glyma.16G025000 Glycine max HOM05D000590 ORTHO05D006825 2.3e-111 406.4 314 60.8
Gorai.004G043900 Gossypium raimondii HOM05D000590 ORTHO05D006825 3.0e-111 406.0 311 60.8
Dinv35112 Davidia involucrata HOM05D000590 ORTHO05D006825 3.9e-111 405.6 289 63.7
Cfa003800 Carpinus fangiana HOM05D000590 ORTHO05D001713 1.1e-110 404.1 309 63.1
Oeu015362.1 Olea europaea HOM05D000590 ORTHO05D006825 1.1e-110 404.1 290 65.2
GSVIVG01027098001 Vitis vinifera HOM05D000590 ORTHO05D006825 1.5e-110 403.7 285 64.6
Gohir.A08G034400 Gossypium hirsutum HOM05D000590 ORTHO05D006825 2.5e-110 402.9 311 60.5
GSVIVG01027095001 Vitis vinifera HOM05D000590 ORTHO05D006825 2.5e-110 402.9 285 64.2
Prupe.2G187500 Prunus persica HOM05D000590 ORTHO05D006825 5.6e-110 401.7 321 58.9
MELO3C022415.2 Cucumis melo HOM05D000590 ORTHO05D006825 9.5e-110 401.0 334 58.1
MD01G1080100 Malus domestica HOM05D000590 ORTHO05D006825 9.5e-110 401.0 310 60.6
Lj3g0003332 Lotus japonicus HOM05D000590 ORTHO05D006825 1.2e-109 400.6 309 60.5
CsaV3_6G007130 Cucumis sativus L. HOM05D000590 ORTHO05D006825 1.6e-109 400.2 307 61.2
Migut.B01870 Erythranthe guttata HOM05D000590 ORTHO05D006825 2.1e-109 399.8 290 62.4
Nitab4.5_0004999g0020 Nicotiana tabacum HOM05D000590 ORTHO05D006825 6.2e-109 398.3 278 64.4
SalBow3G4091 Salvia bowleyana HOM05D000590 ORTHO05D006825 1.4e-108 397.1 295 61.0
Lj7A501T47 Lonicera japonica HOM05D000590 ORTHO05D006825 1.8e-108 396.7 273 64.8
CANSAT56G2355 Cannabis sativa HOM05D000590 ORTHO05D006825 2.3e-108 396.4 342 57.0
RcHm_v2.0_Chr1g0359371 Rosa chinensis HOM05D000590 ORTHO05D006825 3.1e-108 396.0 294 64.6
Psat4g160760 Pisum sativum HOM05D000590 ORTHO05D006825 1.2e-107 394.0 323 58.5
FAN06G0495 Fragaria x ananassa HOM05D000590 ORTHO05D006825 5.8e-107 391.7 294 62.9
FAN01G2486 Fragaria x ananassa HOM05D000590 ORTHO05D006825 1.7e-106 390.2 294 62.6
Nitab4.5_0000838g0230 Nicotiana tabacum HOM05D000590 ORTHO05D006825 1.7e-106 390.2 272 65.1
FAN06G0513 Fragaria x ananassa HOM05D000590 ORTHO05D006825 2.2e-106 389.8 294 62.6
AUR62004487 Chenopodium quinoa HOM05D000590 ORTHO05D006825 6.4e-106 388.3 292 62.3
FAN10G1076 Fragaria x ananassa HOM05D000590 ORTHO05D006825 6.4e-106 388.3 294 62.2
FAN10G3131 Fragaria x ananassa HOM05D000590 ORTHO05D006825 6.4e-106 388.3 294 61.9
C04p31120 Brassica napus HOM05D000590 ORTHO05D006825 1.1e-105 387.5 254 78.3
FvH4_7g16360 Fragaria vesca HOM05D000590 ORTHO05D006825 1.1e-105 387.5 294 62.9
QL04p061137 Quercus lobata HOM05D000590 ORTHO05D006825 2.4e-105 386.3 323 58.5
PGR031G1800 Punica granatum HOM05D000590 ORTHO05D006825 3.2e-105 386.0 290 62.1
AUR62023466 Chenopodium quinoa HOM05D000590 ORTHO05D006825 7.0e-105 384.8 291 61.9
TPR.G15352 Trifolium pratense HOM05D000590 ORTHO05D006825 7.0e-105 384.8 274 63.9
Nn2g14772 Nelumbo nucifera HOM05D000590 ORTHO05D006825 6.0e-104 381.7 294 58.2
Eucgr.D02371 Eucalyptus grandis HOM05D000590 ORTHO05D006825 1.0e-103 380.9 295 61.4
Migut.N01547 Erythranthe guttata HOM05D000590 ORTHO05D006825 1.3e-103 380.6 290 59.3
Potri.014G098300 Populus trichocarpa HOM05D000590 ORTHO05D006825 1.7e-103 380.2 315 55.9
CAN.G986.8 Capsicum annuum HOM05D000590 ORTHO05D006825 3.0e-103 379.4 271 63.1
Ciclev10023676m.g Citrus clementina HOM05D000590 ORTHO05D006825 8.6e-103 377.9 273 62.3
Manes.01G246600 Manihot esculenta HOM05D000590 ORTHO05D006825 1.5e-102 377.1 296 59.1
Cc02_g39290 Coffea canephora HOM05D000590 ORTHO05D006825 1.9e-102 376.7 295 58.3
Duzib138G1692 Durio zibethinus HOM05D000590 ORTHO05D006825 1.9e-102 376.7 278 61.9
Rhsim01G0172200 Rhododendron simsii HOM05D000590 ORTHO05D006825 5.6e-102 375.2 273 62.6
FAN03G1068 Fragaria x ananassa HOM05D000590 ORTHO05D006825 7.3e-102 374.8 283 61.5
Lsat_1_v5_gn_7_1240 Lactuca sativa HOM05D000590 ORTHO05D006825 9.5e-102 374.4 275 62.2
HanXRQChr04g0120221 Helianthus annuus HOM05D000590 ORTHO05D006825 2.1e-101 373.2 297 57.9
Actinidia28121 Actinidia chinensis HOM05D000590 ORTHO05D006825 4.0e-100 369.0 277 61.7
Atru.chr5.661 Acer truncatum HOM05D000590 ORTHO05D006825 1.3e-98 364.0 291 56.7
Medtr8g027735 Medicago truncatula HOM05D000590 ORTHO05D006825 2.9e-98 362.8 278 60.4
Ca_23539_v3 Cicer arietinum L. HOM05D000590 ORTHO05D006825 6.4e-98 361.7 278 61.2
EL10Ac1g00275 Beta vulgaris HOM05D000590 ORTHO05D006825 1.2e-96 357.5 270 61.5
SGA_v2.0_scaffold5G03015 Striga asiatica HOM05D000590 ORTHO05D006825 6.0e-96 355.1 312 55.8
CiPaw.02G040500 Carya illinoinensis HOM05D000590 ORTHO05D006825 7.8e-96 354.8 308 57.1
Ah.05g179600 Amaranthus hybridus HOM05D000590 ORTHO05D006825 3.3e-94 349.4 270 60.0
Sed0003230 Sechium edule HOM05D000590 ORTHO05D006825 4.7e-93 345.5 297 56.9
ATR0602G065 Amborella trichopoda HOM05D000590 ORTHO05D006825 6.2e-93 345.1 301 53.5
PSO478G0645 Papaver somniferum HOM05D000590 ORTHO05D006825 8.9e-92 341.3 281 55.5
PSO782G3674 Papaver somniferum HOM05D000590 ORTHO05D006825 1.5e-91 340.5 353 50.4
Aqoxy5G04231 Aquilegia oxysepala HOM05D000590 ORTHO05D006825 2.0e-91 340.1 263 60.5
vmacro12678 Vaccinium macrocarpon HOM05D000590 ORTHO05D001713 2.6e-91 339.7 335 50.1
ECA236G1053 Erigeron canadensis HOM05D000590 ORTHO05D001713 1.6e-88 330.5 244 60.7
Sabra14G0072100 Salix brachista HOM05D000590 ORTHO05D001713 1.6e-88 330.5 283 54.4
Oeu004946.1 Olea europaea HOM05D000590 ORTHO05D006825 1.7e-87 327.0 270 57.8
DCAR_006973 Daucus carota HOM05D000590 ORTHO05D006825 2.3e-87 326.6 298 51.3
Cpa.g.sc96.9 Carica papaya HOM05D000590 ORTHO05D006825 1.9e-86 323.6 331 51.1
BcaC02g10247 Brassica carinata HOM05D000590 ORTHO05D006825 3.6e-85 319.3 190 85.8
PGSC0003DMG400000222 Solanum tuberosum HOM05D000590 ORTHO05D006825 3.2e-81 306.2 239 61.1
ClCG06G001200 Citrullus lanatus HOM05D000590 ORTHO05D006825 3.3e-78 296.2 314 48.7
Thecc.01G343200 Theobroma cacao HOM05D000590 ORTHO05D006825 3.1e-76 289.7 213 59.2
COL.COLO4_06291 Corchorus olitorius HOM05D000590 ORTHO05D000717 1.1e-73 281.2 278 50.4
MBI06_g08454_MAGBIO Magnolia biondii HOM05D000590 ORTHO05D006825 1.8e-71 273.9 216 59.3
MSTRG.17339 Avicennia marina HOM05D000590 ORTHO05D006825 3.1e-68 263.1 190 64.7
SEGI_08329 Sequoiadendron giganteum HOM05D000590 ORTHO05D006825 1.7e-66 257.3 271 48.3
BolC4t24651H Brassica oleracea HOM05D000590 ORTHO05D006825 2.2e-66 256.9 188 72.3
VMungo0331G1406 Vigna mungo HOM05D000590 ORTHO05D000717 4.9e-66 255.8 189 63.0
Lalb_Chr10g0100491 Lupinus albus HOM05D000590 ORTHO05D006825 6.0e-64 248.8 190 62.1
Pp3c6_8570 Physcomitrium patens HOM05D000590 ORTHO05D006825 9.6e-62 241.5 275 43.6
TAR375G0589 Trochodendron aralioides HOM05D000590 ORTHO05D006825 4.8e-61 239.2 179 61.5
Os01g0219200 Oryza sativa ssp. japonica HOM05D000590 ORTHO05D006825 3.1e-60 236.5 305 41.0
HPP92_002828 Vanilla planifolia HOM05D000590 ORTHO05D006825 2.9e-58 229.9 313 40.6
SMO164G0232 Selaginella moellendorffii HOM05D000590 ORTHO05D006825 2.7e-56 223.4 281 41.3
AagrBONN_evm.TU.Sc2ySwM_344.2724 Anthoceros agrestis HOM05D000590 ORTHO05D006825 1.1e-54 218.0 263 43.7
Glyma.07G056100 Glycine max HOM05D000590 ORTHO05D006825 2.8e-53 213.4 190 51.6
SMO200G0118 Selaginella moellendorffii HOM05D000590 ORTHO05D006825 2.8e-53 213.4 283 39.9
AT3G62500 Arabidopsis thaliana HOM05D000590 ORTHO05D006825 4.8e-53 212.6 164 70.1
GSVIVG01027114001 Vitis vinifera HOM05D000590 ORTHO05D006825 5.3e-52 209.1 172 54.7
Sc26g0000660 Simmondsia chinensis HOM05D000590 ORTHO05D006825 3.8e-50 203.0 204 50.5
arahy.Tifrunner.gnm1.ann1.0G81PD Arachis hypogaea HOM05D000590 ORTHO05D006825 7.2e-49 198.7 207 52.7
CBR_g49078 Chara braunii HOM05D000590 ORTHO05D006825 4.6e-48 196.1 309 35.0
CBR_g71803 Chara braunii HOM05D000590 ORTHO05D006825 1.0e-47 194.9 317 35.0
CDE02G2715 Ceratophyllum demersum HOM05D000590 ORTHO05D006825 2.8e-45 186.8 192 49.5
arahy.Tifrunner.gnm1.ann1.AM6JUY Arachis hypogaea HOM05D000590 ORTHO05D006825 8.2e-45 185.3 126 67.5
SMO338G0043 Selaginella moellendorffii HOM05D004142 ORTHO05D005411 6.9e-44 182.2 298 34.9
Mapoly0251s0003 Marchantia polymorpha HOM05D000590 ORTHO05D006825 9.1e-44 181.8 290 35.9
CSS0003243 Camellia sinensis var. sinensis HOM05D000590 ORTHO05D006825 6.5e-42 175.6 134 60.4
CSS0016052 Camellia sinensis var. sinensis HOM05D000590 ORTHO05D006825 2.6e-38 163.7 117 63.2
HanXRQChr09g0243571 Helianthus annuus HOM05D000590 ORTHO05D006825 9.7e-38 161.8 123 56.1
Zm00001eb338700 Zea mays HOM05D000590 ORTHO05D006825 3.4e-35 153.3 252 32.5
Rhsim02G0230200 Rhododendron simsii HOM05D000590 ORTHO05D006825 3.6e-32 143.3 219 36.5
Sc26g0000670 Simmondsia chinensis HOM05D000590 ORTHO05D006825 6.1e-32 142.5 119 57.1
CDE02G3030 Ceratophyllum demersum HOM05D000590 ORTHO05D006825 1.0e-31 141.7 119 56.3
PSO063G6641 Papaver somniferum HOM05D000590 ORTHO05D006825 3.3e-30 136.7 123 54.5
TPR.G3009 Trifolium pratense HOM05D000590 ORTHO05D006825 5.7e-30 136.0 106 59.4
SEGI_01413 Sequoiadendron giganteum HOM05D000590 ORTHO05D006825 9.7e-30 135.2 119 53.8
VMungo0331G1881 Vigna mungo HOM05D000590 ORTHO05D006825 1.6e-27 127.9 124 50.0
CARHR055570 Cardamine hirsuta HOM05D000590 ORTHO05D006825 4.2e-25 119.8 78 69.2
Lalb_Chr10g0100501 Lupinus albus HOM05D000590 ORTHO05D006825 2.1e-24 117.5 93 53.8
BcaC02g10248 Brassica carinata HOM05D000590 ORTHO05D006825 4.4e-22 109.8 56 83.9
GSVIVG01027101001 Vitis vinifera HOM05D000590 ORTHO05D006825 1.3e-21 108.2 78 56.4
SHI13292 Sapria himalayana HOM05D000590 ORTHO05D006825 4.2e-17 93.2 73 58.9
arahy.Tifrunner.gnm1.ann1.06LZL4 Arachis hypogaea HOM05D000590 ORTHO05D006825 1.4e-15 88.2 62 67.7
GSVIVG01027108001 Vitis vinifera HOM05D000590 ORTHO05D006825 1.4e-15 88.2 64 59.4
Sabra02G0141900 Salix brachista HOM05D000590 ORTHO05D006825 3.0e-15 87.0 174 35.1
BcaC08g45153 Brassica carinata HOM05D000590 ORTHO05D032951 5.2e-15 86.3 89 57.3
SHI13291 Sapria himalayana HOM05D000590 ORTHO05D006825 6.8e-15 85.9 63 65.1
C06p27710 Brassica napus HOM05D000590 ORTHO05D032951 6.3e-13 79.3 89 55.1
C06p27870 Brassica napus HOM05D000590 ORTHO05D032951 6.3e-13 79.3 89 55.1
Zm00001eb197190 Zea mays HOM05D002169 ORTHO05D023180 3.1e-12 77.0 154 30.5
unitig_747.g21341 Utricularia gibba HOM05D000590 ORTHO05D006825 2.0e-11 74.3 50 62.0
Zm00001eb119810 Zea mays HOM05D000590 ORTHO05D006825 3.3e-09 67.0 77 37.7
PSO210G5020 Papaver somniferum HOM05D001459 ORTHO05D003498 4.4e-06 56.6 53 49.1


User provided reference genes

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