Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g08092 Brassica carinata HOM05D007613 ORTHO05D009344 3.4e-71 271.6 138 100.0
BraA04t15767Z Brassica rapa HOM05D007613 ORTHO05D009344 6.1e-68 260.8 138 94.2
C04p30380 Brassica napus HOM05D007613 ORTHO05D009344 9.7e-66 253.4 135 94.1
BolC4t24569H Brassica oleracea HOM05D007613 ORTHO05D009344 9.7e-66 253.4 135 94.1
Sp5g00640 Schrenkiella parvula HOM05D007613 ORTHO05D009344 4.7e-60 234.6 135 85.2
Thhalv10006304m.g Eutrema salsugineum HOM05D007613 ORTHO05D009344 3.0e-59 231.9 133 85.7
AL5G45650 Arabidopsis lyrata HOM05D007613 ORTHO05D009344 1.5e-55 219.5 134 80.6
A04p00480 Brassica napus HOM05D007613 ORTHO05D009344 2.0e-55 219.2 126 85.7
CARHR173140 Cardamine hirsuta HOM05D007613 ORTHO05D009344 4.5e-55 218.0 133 79.7
AT3G62880 Arabidopsis thaliana HOM05D007613 ORTHO05D009344 1.1e-53 213.4 130 80.0
Aa31LG10G16510 Aethionema arabicum HOM05D007613 ORTHO05D009344 1.2e-52 209.9 130 78.5
THA.LOC104798831 Tarenaya hassleriana HOM05D007613 ORTHO05D009344 9.1e-48 193.7 130 70.0
Potri.014G128900 Populus trichocarpa HOM05D007613 ORTHO05D009344 2.2e-41 172.6 129 63.6
CiPaw.07G109200 Carya illinoinensis HOM05D007613 ORTHO05D009344 4.8e-41 171.4 129 61.2
Ciclev10022836m.g Citrus clementina HOM05D007613 ORTHO05D009344 1.4e-40 169.9 130 58.5
Eucgr.H01109 Eucalyptus grandis HOM05D007613 ORTHO05D009344 4.1e-40 168.3 130 60.0
MELO3C016000.2 Cucumis melo HOM05D007613 ORTHO05D009344 9.1e-40 167.2 129 62.0
Cpa.g.sc9.260 Carica papaya HOM05D000286 ORTHO05D000170 1.2e-39 166.8 116 65.5
Duzib133G0913 Durio zibethinus HOM05D007613 ORTHO05D009344 1.2e-39 166.8 130 61.5
Manes.01G219200 Manihot esculenta HOM05D007613 ORTHO05D009344 1.2e-39 166.8 129 61.2
CsaV3_7G029280 Cucumis sativus L. HOM05D007613 ORTHO05D009344 1.0e-38 163.7 129 59.7
QL12p028448 Quercus lobata HOM05D007613 ORTHO05D009344 6.5e-38 161.0 129 56.6
Thecc.01G300700 Theobroma cacao HOM05D007613 ORTHO05D009344 2.5e-37 159.1 108 67.6
BcaC02g10319 Brassica carinata HOM05D007613 ORTHO05D009344 3.2e-37 158.7 83 92.8
VMungo0720G1265 Vigna mungo HOM05D007613 ORTHO05D009344 3.2e-37 158.7 129 55.0
vmacro15014 Vaccinium macrocarpon HOM05D007613 ORTHO05D009344 4.2e-37 158.3 135 54.8
Actinidia24821 Actinidia chinensis HOM05D007613 ORTHO05D009344 5.5e-37 157.9 130 54.6
Phvul.007G146700 Phaseolus vulgaris HOM05D007613 ORTHO05D009344 2.7e-36 155.6 129 54.3
PGR119G2478 Punica granatum HOM05D007613 ORTHO05D009344 2.7e-36 155.6 122 59.0
TAR636G2501 Trochodendron aralioides HOM05D007613 ORTHO05D009344 4.7e-36 154.8 129 54.3
Gohir.D12G134100 Gossypium hirsutum HOM05D007613 ORTHO05D009344 8.0e-36 154.1 125 60.0
Gorai.008G145100 Gossypium raimondii HOM05D007613 ORTHO05D009344 1.4e-35 153.3 125 59.2
Psat6g165400 Pisum sativum HOM05D007613 ORTHO05D009344 3.0e-35 152.1 129 53.5
Atru.chr5.1146 Acer truncatum HOM05D007613 ORTHO05D009344 6.8e-35 151.0 125 58.4
TPR.G33996 Trifolium pratense HOM05D007613 ORTHO05D009344 6.8e-35 151.0 129 55.0
arahy.Tifrunner.gnm1.ann1.BW40YJ Arachis hypogaea HOM05D007613 ORTHO05D009344 2.0e-34 149.4 129 51.2
MD03G1288400 Malus domestica HOM05D007613 ORTHO05D009344 2.0e-34 149.4 128 57.0
Prupe.8G261600 Prunus persica HOM05D007613 ORTHO05D009344 2.0e-34 149.4 129 56.6
arahy.Tifrunner.gnm1.ann1.7MAL8N Arachis hypogaea HOM05D007613 ORTHO05D009344 1.3e-33 146.7 129 50.4
ECA248G1192 Erigeron canadensis HOM05D007613 ORTHO05D009344 1.3e-33 146.7 127 54.3
Medtr1g088460 Medicago truncatula HOM05D007613 ORTHO05D009344 2.8e-33 145.6 129 53.5
Nitab4.5_0002820g0060 Nicotiana tabacum HOM05D007613 ORTHO05D009344 1.4e-32 143.3 128 53.1
Nitab4.5_0019054g0010 Nicotiana tabacum HOM05D007613 ORTHO05D009344 2.4e-32 142.5 128 53.1
Solyc06g084550.3 Solanum lycopersicum HOM05D007613 ORTHO05D009344 3.1e-32 142.1 128 51.6
HanXRQChr13g0413041 Helianthus annuus HOM05D007613 ORTHO05D009344 4.1e-32 141.7 125 52.0
Sopen06g035930 Solanum pennellii HOM05D007613 ORTHO05D009344 5.4e-32 141.4 128 52.3
Lalb_Chr06g0166471 Lupinus albus HOM05D007613 ORTHO05D009344 7.0e-32 141.0 126 50.8
GSVIVG01028017001 Vitis vinifera HOM05D007613 ORTHO05D009344 7.0e-32 141.0 125 52.8
Glyma.10G018300 Glycine max HOM05D007613 ORTHO05D009344 1.2e-31 140.2 131 51.1
Lsat_1_v5_gn_5_191040 Lactuca sativa HOM05D007613 ORTHO05D009344 1.2e-31 140.2 127 50.4
Lj5g0017580 Lotus japonicus HOM05D007613 ORTHO05D009344 1.2e-31 140.2 131 49.6
Peaxi162Scf00140g01222 Petunia axillaris HOM05D007613 ORTHO05D009344 3.5e-31 138.7 128 51.6
Ca_10334_v3 Cicer arietinum L. HOM05D007613 ORTHO05D009344 5.9e-31 137.9 129 51.2
DCAR_018332 Daucus carota HOM05D007613 ORTHO05D009344 1.3e-30 136.7 126 51.6
TWI59G0030 Tripterygium wilfordii HOM05D007613 ORTHO05D009344 1.7e-30 136.3 125 54.4
Migut.D00222 Erythranthe guttata HOM05D007613 ORTHO05D009344 2.3e-30 136.0 127 49.6
MSTRG.18147 Avicennia marina HOM05D007613 ORTHO05D009344 5.0e-30 134.8 129 48.8
CDE08G0198 Ceratophyllum demersum HOM05D007613 ORTHO05D009344 6.6e-30 134.4 125 50.4
RcHm_v2.0_Chr6g0294031 Rosa chinensis HOM05D007613 ORTHO05D009344 6.6e-30 134.4 131 46.6
EL10Ac7g17473 Beta vulgaris HOM05D007613 ORTHO05D009344 8.6e-30 134.0 129 51.9
Lalb_Chr02g0146351 Lupinus albus HOM05D007613 ORTHO05D009344 1.1e-29 133.7 124 49.2
CAN.G1209.25 Capsicum annuum HOM05D007613 ORTHO05D009344 3.3e-29 132.1 128 50.0
COL.COLO4_23344 Corchorus olitorius HOM05D007613 ORTHO05D009344 4.2e-29 131.7 92 62.0
PSO170G2016 Papaver somniferum HOM05D007613 ORTHO05D009344 1.2e-28 130.2 129 49.6
Oeu048336.2 Olea europaea HOM05D007613 ORTHO05D009344 2.8e-28 129.0 129 47.3
Sed0015913 Sechium edule HOM05D007613 ORTHO05D009344 3.0e-27 125.6 97 60.8
Ah.08g213430 Amaranthus hybridus HOM05D000286 ORTHO05D000170 4.0e-27 125.2 119 50.4
Cc01_g20860 Coffea canephora HOM05D007613 ORTHO05D009344 5.2e-27 124.8 117 51.3
Hma1.2p1_0491F.1_g164570 Hydrangea macrophylla HOM05D007613 ORTHO05D009344 1.2e-26 123.6 130 46.9
ClCG09G005860 Citrullus lanatus HOM05D007613 ORTHO05D009344 8.3e-25 117.5 137 49.6
Haze_04939 Corylus avellana HOM05D007613 ORTHO05D009344 3.2e-24 115.5 105 51.4
FvH4_2g25740 Fragaria vesca HOM05D007613 ORTHO05D009344 4.1e-24 115.2 130 40.0
Migut.B01150 Erythranthe guttata HOM05D007613 ORTHO05D009344 5.4e-24 114.8 108 48.1
CSS0026666 Camellia sinensis var. sinensis HOM05D007613 ORTHO05D009344 1.2e-23 113.6 87 57.5
Nn3g21498 Nelumbo nucifera HOM05D007613 ORTHO05D009344 2.9e-22 109.0 86 58.1
Aqoxy2G02939 Aquilegia oxysepala HOM05D007613 ORTHO05D009344 1.4e-19 100.1 95 45.3
FAN20G1450 Fragaria x ananassa HOM05D007613 ORTHO05D009344 2.3e-19 99.4 150 34.0
Sabra14G0095700 Salix brachista HOM05D007613 ORTHO05D009344 3.1e-19 99.0 129 45.0
Rhsim01G0285300 Rhododendron simsii HOM05D007613 ORTHO05D009344 1.5e-18 96.7 97 47.4
ATR0706G141 Amborella trichopoda HOM05D007613 ORTHO05D009344 1.4e-16 90.1 119 36.1
HanXRQChr13g0413071 Helianthus annuus HOM05D007613 ORTHO05D009344 4.1e-16 88.6 74 54.1
Carub.0005s2952 Capsella rubella HOM05D001675 ORTHO05D001808 9.2e-16 87.4 47 85.1
FAN27G2766 Fragaria x ananassa HOM05D007613 ORTHO05D009344 2.7e-15 85.9 87 42.5
Pp3c19_22480 Physcomitrium patens HOM05D007613 ORTHO05D009344 3.5e-15 85.5 122 40.2
PGSC0003DMG400024046 Solanum tuberosum HOM05D007613 ORTHO05D009344 4.6e-15 85.1 151 35.1
SMO347G0100 Selaginella moellendorffii HOM05D007613 ORTHO05D009344 1.7e-14 83.2 91 44.0
MD11G1309700 Malus domestica HOM05D007613 ORTHO05D009344 3.0e-14 82.4 65 58.5
SGA_v2.0_scaffold1G00364 Striga asiatica HOM05D001636 ORTHO05D003817 3.0e-14 82.4 72 47.2
AUR62008666 Chenopodium quinoa HOM05D007613 ORTHO05D009344 2.5e-13 79.3 77 46.8
SalBow3G3757 Salvia bowleyana HOM05D007613 ORTHO05D009344 4.7e-12 75.1 63 55.6
Actinidia21047 Actinidia chinensis HOM05D007613 ORTHO05D009344 1.4e-11 73.6 55 56.4
Gohir.A12G130300 Gossypium hirsutum HOM05D007613 ORTHO05D009344 2.3e-11 72.8 125 40.0
Cfa005911 Carpinus fangiana HOM05D007613 ORTHO05D009344 2.0e-10 69.7 129 40.3
Mapoly0048s0107 Marchantia polymorpha HOM05D007613 ORTHO05D009344 2.0e-10 69.7 95 37.9
SHI15147 Sapria himalayana HOM05D007613 ORTHO05D009344 2.6e-10 69.3 63 50.8
FAN24G3183 Fragaria x ananassa HOM05D007613 ORTHO05D009344 5.8e-10 68.2 68 39.7
SEGI_00670 Sequoiadendron giganteum HOM05D002174 ORTHO05D005941 1.3e-09 67.0 129 34.1
FAN15G1907 Fragaria x ananassa HOM05D007613 ORTHO05D009344 4.9e-09 65.1 107 32.7
Hund18170 Selenicereus undatus HOM05D007613 ORTHO05D009344 8.3e-09 64.3 68 39.7
Os01g0303300 Oryza sativa ssp. japonica HOM05D002174 ORTHO05D005447 7.1e-08 61.2 124 37.9
AagrBONN_evm.TU.Sc2ySwM_228.3892 Anthoceros agrestis HOM05D002174 ORTHO05D005941 1.2e-07 60.5 101 30.7
Pp3c3_28050 Physcomitrium patens HOM05D002174 ORTHO05D005941 7.8e-07 57.8 102 33.3
SMO358G0166 Selaginella moellendorffii HOM05D002174 ORTHO05D005941 7.8e-07 57.8 103 32.0
AagrBONN_evm.TU.Sc2ySwM_117.346 Anthoceros agrestis HOM05D001717 ORTHO05D007217 1.0e-06 57.4 114 31.6
SMO358G0445 Selaginella moellendorffii HOM05D002174 ORTHO05D005941 1.0e-06 57.4 105 33.3
Ah.12g058520 Amaranthus hybridus HOM05D002174 ORTHO05D005941 2.3e-06 56.2 108 31.5
CDE01G0513 Ceratophyllum demersum HOM05D002174 ORTHO05D005447 2.3e-06 56.2 124 28.2
Lalb_Chr07g0182101 Lupinus albus HOM05D002174 ORTHO05D005447 2.3e-06 56.2 116 35.3
Mapoly0133s0032 Marchantia polymorpha HOM05D002174 ORTHO05D005941 2.3e-06 56.2 113 30.1
SEGI_11453 Sequoiadendron giganteum HOM05D002174 ORTHO05D005941 2.3e-06 56.2 109 31.2
Medtr4g121900 Medicago truncatula HOM05D002174 ORTHO05D005447 3.0e-06 55.8 91 33.0
Pp3c12_16880 Physcomitrium patens HOM05D002174 ORTHO05D005941 5.1e-06 55.1 102 32.4
Pp3c10_18330 Physcomitrium patens HOM05D002174 ORTHO05D005447 6.6e-06 54.7 97 35.1
Pp3c1_40570 Physcomitrium patens HOM05D002174 ORTHO05D005941 8.6e-06 54.3 124 25.8


User provided reference genes

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