Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g08069 Brassica carinata HOM05D006802 ORTHO05D008507 5.6e-175 617.5 302 100.0
BraA04t15733Z Brassica rapa HOM05D006802 ORTHO05D000675 2.0e-140 502.7 290 87.2
A04p00130 Brassica napus HOM05D006802 ORTHO05D008507 2.2e-139 499.2 290 86.9
C04p29940 Brassica napus HOM05D000738 ORTHO05D000675 3.8e-139 498.4 288 87.2
BolC4t24525H Brassica oleracea HOM05D006802 ORTHO05D000675 9.6e-135 483.8 285 85.3
Thhalv10006021m.g Eutrema salsugineum HOM05D006802 ORTHO05D008507 1.1e-117 427.2 298 74.5
AL5G46150 Arabidopsis lyrata HOM05D006802 ORTHO05D008507 8.8e-112 407.5 313 69.0
CARHR291660 Cardamine hirsuta HOM05D006802 ORTHO05D008507 1.7e-107 393.3 314 67.2
Carub.0005s2995 Capsella rubella HOM05D006802 ORTHO05D008507 1.1e-101 374.0 278 68.3
Aa31LG10G17140 Aethionema arabicum HOM05D000738 ORTHO05D000675 1.3e-91 340.5 335 57.3
THA.LOC104801985 Tarenaya hassleriana HOM05D006802 ORTHO05D008507 1.7e-91 340.1 304 59.5
ClCG09G007380 Citrullus lanatus HOM05D006802 ORTHO05D008507 3.2e-77 292.7 337 49.6
Cfa006184 Carpinus fangiana HOM05D006802 ORTHO05D008507 5.4e-77 292.0 354 46.9
Haze_04660 Corylus avellana HOM05D006802 ORTHO05D008507 2.7e-76 289.7 353 47.0
Prupe.8G235900 Prunus persica HOM05D006802 ORTHO05D008507 1.3e-75 287.3 333 49.8
Atru.chr5.1503 Acer truncatum HOM05D006802 ORTHO05D008507 2.3e-75 286.6 355 47.3
Gorai.008G002600 Gossypium raimondii HOM05D006802 ORTHO05D008507 2.9e-75 286.2 332 49.7
Duzib133G0133 Durio zibethinus HOM05D006802 ORTHO05D008507 5.6e-74 282.0 332 49.4
Hma1.2p1_1924F.1_g307690 Hydrangea macrophylla HOM05D006802 ORTHO05D008507 7.3e-74 281.6 325 50.5
Thecc.01G272900 Theobroma cacao HOM05D006802 ORTHO05D008507 2.1e-73 280.0 331 48.3
QL12p020415 Quercus lobata HOM05D006802 ORTHO05D008507 2.8e-73 279.6 343 48.4
RcHm_v2.0_Chr6g0290231 Rosa chinensis HOM05D006802 ORTHO05D008507 1.4e-72 277.3 311 50.2
CAN.G433.12 Capsicum annuum HOM05D006802 ORTHO05D008507 1.8e-72 276.9 334 47.6
FAN15G2517 Fragaria x ananassa HOM05D006802 ORTHO05D008507 3.1e-72 276.2 309 49.2
FAN15G2655 Fragaria x ananassa HOM05D006802 ORTHO05D008507 3.1e-72 276.2 309 49.2
Sp5g00240 Schrenkiella parvula HOM05D006802 ORTHO05D008507 2.0e-71 273.5 216 67.1
Potri.002G049300 Populus trichocarpa HOM05D006802 ORTHO05D008507 3.4e-71 272.7 350 45.1
Sed0009701 Sechium edule HOM05D006802 ORTHO05D008507 3.4e-71 272.7 340 47.1
vmacro14901 Vaccinium macrocarpon HOM05D006802 ORTHO05D008507 3.4e-71 272.7 335 47.8
MD03G1259400 Malus domestica HOM05D006802 ORTHO05D008507 5.8e-71 271.9 318 49.7
Gohir.A12G003100 Gossypium hirsutum HOM05D006802 ORTHO05D008507 7.5e-71 271.6 319 48.9
Sabra02G0040100 Salix brachista HOM05D006802 ORTHO05D008507 9.8e-71 271.2 349 45.8
Sopen09g027330 Solanum pennellii HOM05D006802 ORTHO05D008507 1.7e-70 270.4 338 45.9
PGSC0003DMG400019349 Solanum tuberosum HOM05D006802 ORTHO05D008507 2.2e-70 270.0 337 46.3
Rhsim01G0272400 Rhododendron simsii HOM05D006802 ORTHO05D008507 2.9e-70 269.6 341 46.9
Cpa.g.sc52.110 Carica papaya HOM05D006802 ORTHO05D008507 3.7e-70 269.2 353 43.9
Lalb_Chr02g0142571 Lupinus albus HOM05D006802 ORTHO05D008507 3.7e-70 269.2 339 46.0
Cc01_g19110 Coffea canephora HOM05D006802 ORTHO05D008507 4.9e-70 268.9 325 47.7
CsaV3_7G027850 Cucumis sativus L. HOM05D006802 ORTHO05D008507 6.4e-70 268.5 350 45.7
Oeu023625.1 Olea europaea HOM05D006802 ORTHO05D008507 6.4e-70 268.5 304 49.7
COL.COLO4_09049 Corchorus olitorius HOM05D006802 ORTHO05D008507 2.4e-69 266.5 334 49.1
CSS0013542 Camellia sinensis var. sinensis HOM05D006802 ORTHO05D008507 3.2e-69 266.2 340 46.8
CSS0022180 Camellia sinensis var. sinensis HOM05D006802 ORTHO05D008507 7.0e-69 265.0 340 46.8
Lj1A51G14 Lonicera japonica HOM05D006802 ORTHO05D008507 7.0e-69 265.0 337 45.7
EL10Ac5g10508 Beta vulgaris HOM05D006802 ORTHO05D008507 1.6e-68 263.8 347 43.8
TWI75G0310 Tripterygium wilfordii HOM05D006802 ORTHO05D008507 2.7e-68 263.1 346 47.4
AT3G63290 Arabidopsis thaliana HOM05D006802 ORTHO05D008507 3.5e-68 262.7 210 63.8
FAN20G1382 Fragaria x ananassa HOM05D006802 ORTHO05D008507 6.0e-68 261.9 313 48.2
PSO170G3117 Papaver somniferum HOM05D006802 ORTHO05D008507 7.8e-68 261.5 351 44.2
HanXRQChr04g0115321 Helianthus annuus HOM05D006802 ORTHO05D008507 1.3e-67 260.8 310 47.7
Lsat_1_v5_gn_8_57120 Lactuca sativa HOM05D006802 ORTHO05D008507 5.0e-67 258.8 304 47.0
Aqoxy2G03446 Aquilegia oxysepala HOM05D006802 ORTHO05D008507 1.5e-66 257.3 359 42.3
ECA236G2804 Erigeron canadensis HOM05D006802 ORTHO05D008507 2.5e-66 256.5 311 47.6
Eucgr.K03337 Eucalyptus grandis HOM05D006802 ORTHO05D008507 3.3e-66 256.1 353 42.8
FAN27G1711 Fragaria x ananassa HOM05D006802 ORTHO05D008507 4.3e-66 255.8 309 47.6
FAN27G2418 Fragaria x ananassa HOM05D006802 ORTHO05D008507 4.3e-66 255.8 309 47.6
FAN24G3569 Fragaria x ananassa HOM05D006802 ORTHO05D008507 9.5e-66 254.6 302 48.3
Manes.01G204700 Manihot esculenta HOM05D006802 ORTHO05D008507 2.1e-65 253.4 356 43.3
Ah.11g050290 Amaranthus hybridus HOM05D006802 ORTHO05D008507 2.8e-65 253.1 350 43.7
Hund02858 Selenicereus undatus HOM05D006802 ORTHO05D008507 4.7e-65 252.3 362 44.2
MELO3C015801.2 Cucumis melo HOM05D006802 ORTHO05D008507 8.1e-65 251.5 351 43.6
FvH4_2g23081 Fragaria vesca HOM05D006802 ORTHO05D008507 1.4e-64 250.8 309 47.6
Ciclev10023787m.g Citrus clementina HOM05D006802 ORTHO05D008507 7.5e-63 245.0 304 46.7
DCAR_005859 Daucus carota HOM05D006802 ORTHO05D008507 7.5e-63 245.0 359 44.3
SalBow4G3164 Salvia bowleyana HOM05D006802 ORTHO05D008507 2.2e-62 243.4 306 47.1
SGA_v2.0_scaffold138G35303 Striga asiatica HOM05D006802 ORTHO05D008507 2.2e-62 243.4 297 46.8
Ca_09735_v3 Cicer arietinum L. HOM05D000738 ORTHO05D000675 6.4e-62 241.9 304 46.1
Lj5g0013924 Lotus japonicus HOM05D006802 ORTHO05D008507 8.3e-62 241.5 306 46.1
unitig_8.g3726 Utricularia gibba HOM05D006802 ORTHO05D008507 1.1e-61 241.1 301 45.2
CiPaw.07G088100 Carya illinoinensis HOM05D006802 ORTHO05D008507 5.4e-61 238.8 300 46.7
CANSAT25G2646 Cannabis sativa HOM05D006802 ORTHO05D008507 7.1e-61 238.4 324 44.4
Glyma.02G144900 Glycine max HOM05D006802 ORTHO05D008507 1.6e-60 237.3 317 43.8
Medtr1g071470 Medicago truncatula HOM05D006802 ORTHO05D008507 1.6e-60 237.3 314 45.2
Sc05g0001260 Simmondsia chinensis HOM05D006802 ORTHO05D008507 2.7e-60 236.5 348 41.1
TPR.G25699 Trifolium pratense HOM05D006802 ORTHO05D008507 2.7e-60 236.5 316 44.3
VMungo0720G2797 Vigna mungo HOM05D006802 ORTHO05D008507 1.7e-59 233.8 317 42.9
PGR044G0137 Punica granatum HOM05D006802 ORTHO05D008507 1.1e-58 231.1 336 41.7
PGR047G0003 Punica granatum HOM05D006802 ORTHO05D008507 1.1e-58 231.1 336 41.7
AUR62011982 Chenopodium quinoa HOM05D006802 ORTHO05D008507 2.8e-57 226.5 345 40.9
Migut.D00338 Erythranthe guttata HOM05D006802 ORTHO05D008507 1.8e-56 223.8 300 46.0
ATR0665G117 Amborella trichopoda HOM05D006802 ORTHO05D008507 2.3e-56 223.4 318 42.5
AUR62032294 Chenopodium quinoa HOM05D006802 ORTHO05D008507 1.2e-55 221.1 343 40.2
Phvul.007G174300 Phaseolus vulgaris HOM05D006802 ORTHO05D008507 1.5e-55 220.7 321 41.7
Solyc09g065580.4 Solanum lycopersicum HOM05D006802 ORTHO05D008507 2.3e-51 206.8 301 41.5
Peaxi162Scf00230g00716 Petunia axillaris HOM05D006802 ORTHO05D008507 8.6e-51 204.9 299 41.5
GSVIVG01001200001 Vitis vinifera HOM05D006802 ORTHO05D008507 7.3e-50 201.8 229 49.3
SalBow4G0867 Salvia bowleyana HOM05D006802 ORTHO05D008507 1.1e-48 198.0 306 41.2
Nitab4.5_0000252g0180 Nicotiana tabacum HOM05D006802 ORTHO05D008507 1.4e-48 197.6 298 40.3
Nitab4.5_0000678g0020 Nicotiana tabacum HOM05D006802 ORTHO05D008507 2.0e-47 193.7 302 40.1
Mapoly0127s0046 Marchantia polymorpha HOM05D006802 ORTHO05D008507 3.2e-45 186.4 315 38.4
Zm00001eb202090 Zea mays HOM05D006802 ORTHO05D008507 2.1e-44 183.7 351 36.5
Dinv32894 Davidia involucrata HOM05D000738 ORTHO05D000675 1.3e-43 181.0 243 45.3
Hma1.2p1_1924F.1_g307700 Hydrangea macrophylla HOM05D006802 ORTHO05D008507 3.9e-43 179.5 188 51.1
MBI11_g04239_MAGBIO Magnolia biondii HOM05D006802 ORTHO05D008507 6.6e-43 178.7 303 38.3
arahy.Tifrunner.gnm1.ann1.BH5QN1 Arachis hypogaea HOM05D006802 ORTHO05D008507 8.7e-43 178.3 262 40.8
AagrBONN_evm.TU.Sc2ySwM_368.2173 Anthoceros agrestis HOM05D006802 ORTHO05D008507 1.3e-41 174.5 314 36.3
arahy.Tifrunner.gnm1.ann1.M4INHU Arachis hypogaea HOM05D006802 ORTHO05D008507 2.8e-41 173.3 248 40.7
Os10g0208500 Oryza sativa ssp. japonica HOM05D006802 ORTHO05D008507 3.6e-41 172.9 351 35.6
Actinidia21140 Actinidia chinensis HOM05D006802 ORTHO05D008507 1.7e-38 164.1 302 39.1
Gohir.D12G002800 Gossypium hirsutum HOM05D006802 ORTHO05D008507 3.8e-38 162.9 182 48.9
Glyma.10G029100 Glycine max HOM05D006802 ORTHO05D008507 1.2e-36 157.9 240 40.4
SMO358G0716 Selaginella moellendorffii HOM05D006802 ORTHO05D008507 3.5e-36 156.4 259 39.8
CDE05G0787 Ceratophyllum demersum HOM05D006802 ORTHO05D008507 1.3e-35 154.5 174 47.7
Pp3c22_5720 Physcomitrium patens HOM05D006802 ORTHO05D008507 6.6e-35 152.1 233 39.9
Psat6g059280 Pisum sativum HOM05D006802 ORTHO05D008507 1.1e-34 151.4 239 39.3
MBI11_g35085_MAGBIO Magnolia biondii HOM05D006802 ORTHO05D008507 2.8e-25 120.2 219 37.9
SEGI_17080 Sequoiadendron giganteum HOM05D006802 ORTHO05D008507 5.8e-23 112.5 200 35.0
SEGI_40565 Sequoiadendron giganteum HOM05D006802 ORTHO05D008507 5.8e-23 112.5 200 35.0
MBI11_g35086_MAGBIO Magnolia biondii HOM05D006802 ORTHO05D008507 7.4e-18 95.5 101 49.5
CiPaw.03G235100 Carya illinoinensis HOM05D005850 ORTHO05D007405 1.1e-16 91.7 306 29.1
CSS0027687 Camellia sinensis var. sinensis HOM05D005850 ORTHO05D007405 3.1e-16 90.1 304 27.6
CSS0006300 Camellia sinensis var. sinensis HOM05D005850 ORTHO05D007405 5.3e-16 89.4 321 27.1
FAN26G3074 Fragaria x ananassa HOM05D005850 ORTHO05D007405 1.5e-15 87.8 306 26.1
Os05g0556000 Oryza sativa ssp. japonica HOM05D005850 ORTHO05D007405 1.5e-15 87.8 300 29.7
Zm00001eb343200 Zea mays HOM05D005850 ORTHO05D007405 2.0e-15 87.4 290 30.7
RcHm_v2.0_Chr2g0091051 Rosa chinensis HOM05D005850 ORTHO05D007405 2.6e-15 87.0 300 25.7
Sp7g10960 Schrenkiella parvula HOM05D005850 ORTHO05D007405 5.9e-15 85.9 300 28.0
BcaB03g16095 Brassica carinata HOM05D005850 ORTHO05D007405 1.3e-14 84.7 286 28.3
A04p08720 Brassica napus HOM05D005850 ORTHO05D007405 1.3e-14 84.7 300 28.3
FAN26G0510 Fragaria x ananassa HOM05D005850 ORTHO05D007405 1.3e-14 84.7 306 26.1
BraA04t16569Z Brassica rapa HOM05D005850 ORTHO05D007405 3.8e-14 83.2 299 28.1
FAN19G1578 Fragaria x ananassa HOM05D005850 ORTHO05D007405 3.8e-14 83.2 306 25.5
CSS0015458 Camellia sinensis var. sinensis HOM05D005850 ORTHO05D007405 5.0e-14 82.8 304 27.0
Aqoxy7G01830 Aquilegia oxysepala HOM05D005850 ORTHO05D007405 6.5e-14 82.4 295 27.8
Glyma.09G227900 Glycine max HOM05D005850 ORTHO05D007405 6.5e-14 82.4 305 26.9
Glyma.12G008700 Glycine max HOM05D005850 ORTHO05D007405 6.5e-14 82.4 305 26.9
FvH4_1g05370 Fragaria vesca HOM05D005850 ORTHO05D007405 1.4e-13 81.3 306 25.2
Eucgr.C04135 Eucalyptus grandis HOM05D005850 ORTHO05D007405 1.9e-13 80.9 305 26.9
QL02p086096 Quercus lobata HOM05D005850 ORTHO05D007405 2.5e-13 80.5 294 27.6
Prupe.7G227200 Prunus persica HOM05D005850 ORTHO05D007405 3.2e-13 80.1 304 27.3
Lj3g0026332 Lotus japonicus HOM05D005850 ORTHO05D007405 4.2e-13 79.7 305 26.9
Gohir.A06G060700 Gossypium hirsutum HOM05D005850 ORTHO05D007405 5.5e-13 79.3 285 28.8
VMungo1127G0399 Vigna mungo HOM05D005850 ORTHO05D007405 7.2e-13 79.0 302 27.8
Gohir.D06G059100 Gossypium hirsutum HOM05D005850 ORTHO05D007405 9.3e-13 78.6 276 29.7
COL.COLO4_34934 Corchorus olitorius HOM05D005850 ORTHO05D007405 1.2e-12 78.2 294 28.2
Gorai.010G068900 Gossypium raimondii HOM05D005850 ORTHO05D007405 2.1e-12 77.4 286 28.0
Pp3c22_5780 Physcomitrium patens HOM05D006802 ORTHO05D008507 2.7e-12 77.0 108 41.7
Sc07g0007400 Simmondsia chinensis HOM05D005850 ORTHO05D007405 2.7e-12 77.0 274 27.4
ECA234G3981 Erigeron canadensis HOM05D005850 ORTHO05D007405 3.5e-12 76.6 286 26.6
Migut.J01174 Erythranthe guttata HOM05D005850 ORTHO05D007405 3.5e-12 76.6 282 28.0
Nn6g34147 Nelumbo nucifera HOM05D006802 ORTHO05D008507 3.5e-12 76.6 93 48.4
Phvul.011G012400 Phaseolus vulgaris HOM05D005850 ORTHO05D007405 3.5e-12 76.6 307 27.0
EL10Ac8g18542 Beta vulgaris HOM05D005850 ORTHO05D007405 4.6e-12 76.3 291 26.1
CBR_g56394 Chara braunii HOM05D006802 ORTHO05D008507 4.6e-12 76.3 74 48.6
Medtr0314s0030 Medicago truncatula HOM05D005850 ORTHO05D007405 4.6e-12 76.3 299 27.8
MELO3C004544.2 Cucumis melo HOM05D005850 ORTHO05D007405 6.1e-12 75.9 300 26.3
CsaV3_2G002440 Cucumis sativus L. HOM05D005850 ORTHO05D007405 7.9e-12 75.5 300 26.0
FAN28G1812 Fragaria x ananassa HOM05D005850 ORTHO05D007405 1.0e-11 75.1 306 24.5
HPP92_023543 Vanilla planifolia HOM05D006802 ORTHO05D008507 1.0e-11 75.1 90 47.8
CANSAT56G0565 Cannabis sativa HOM05D005850 ORTHO05D007405 1.3e-11 74.7 300 26.7
Nitab4.5_0004979g0100 Nicotiana tabacum HOM05D005850 ORTHO05D007405 2.3e-11 73.9 301 26.2
Mapoly0029s0010 Marchantia polymorpha HOM05D005850 ORTHO05D007405 3.0e-11 73.6 295 24.1
Nitab4.5_0010299g0010 Nicotiana tabacum HOM05D005850 ORTHO05D007405 3.0e-11 73.6 301 27.2
CDE05G1612 Ceratophyllum demersum HOM05D006802 ORTHO05D008507 3.9e-11 73.2 91 45.1
Ca_14665_v3 Cicer arietinum L. HOM05D005850 ORTHO05D007405 3.9e-11 73.2 300 27.3
TPR.G30190 Trifolium pratense HOM05D005850 ORTHO05D007405 3.9e-11 73.2 302 27.2
DCAR_028730 Daucus carota HOM05D005850 ORTHO05D007405 6.7e-11 72.4 275 27.3
unitig_22.g6630 Utricularia gibba HOM05D005850 ORTHO05D007405 1.9e-10 70.9 271 28.8
HPP92_003437 Vanilla planifolia HOM05D005850 ORTHO05D007405 3.3e-10 70.1 280 24.3
HanXRQChr12g0355831 Helianthus annuus HOM05D005850 ORTHO05D007405 4.3e-10 69.7 287 25.1
Psat0s3467g0080 Pisum sativum HOM05D005850 ORTHO05D007405 5.7e-10 69.3 304 26.6
Thecc.09G114700 Theobroma cacao HOM05D005850 ORTHO05D007405 1.6e-09 67.8 306 26.1
CBR_g37310 Chara braunii HOM05D005850 ORTHO05D007405 2.2e-09 67.4 261 26.1
FAN23G2543 Fragaria x ananassa HOM05D005850 ORTHO05D007405 2.2e-09 67.4 307 23.8
SEGI_00902 Sequoiadendron giganteum HOM05D006802 ORTHO05D008507 5.9e-07 59.3 68 51.5
SEGI_14182 Sequoiadendron giganteum HOM05D006802 ORTHO05D008507 5.9e-07 59.3 68 51.5
TAR636G0790 Trochodendron aralioides HOM05D005850 ORTHO05D007405 2.2e-06 57.4 156 30.1


User provided reference genes

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