Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g08045 Brassica carinata HOM05D009566 ORTHO05D007629 5.9e-147 524.2 277 100.0
Sp7g06100 Schrenkiella parvula HOM05D009566 ORTHO05D007629 6.9e-87 324.7 292 65.8
BcaC02g09508 Brassica carinata HOM05D009566 ORTHO05D007629 3.2e-76 289.3 302 61.3
Thhalv10005424m.g Eutrema salsugineum HOM05D009566 ORTHO05D007629 1.6e-75 287.0 285 63.2
BcaB06g27006 Brassica carinata HOM05D009566 ORTHO05D007629 2.7e-75 286.2 302 62.3
A04p10080 Brassica napus HOM05D009566 ORTHO05D007629 1.0e-74 284.3 296 60.8
BolC4t25935H Brassica oleracea HOM05D009566 ORTHO05D007629 3.9e-74 282.3 303 60.7
BraA04t16670Z Brassica rapa HOM05D009566 ORTHO05D007629 5.1e-74 282.0 303 60.7
C04p43550 Brassica napus HOM05D009566 ORTHO05D007629 2.1e-72 276.6 302 59.9
CARHR216660 Cardamine hirsuta HOM05D009566 ORTHO05D007629 3.4e-70 269.2 273 61.5
Carub.0007s3177 Capsella rubella HOM05D009566 ORTHO05D007629 3.2e-68 262.7 272 61.8
AT5G36100 Arabidopsis thaliana HOM05D009566 ORTHO05D007629 2.5e-65 253.1 278 59.7
C02p21140 Brassica napus HOM05D009566 ORTHO05D007629 1.1e-41 174.5 270 46.7
A02p13020 Brassica napus HOM05D009566 ORTHO05D007629 4.1e-39 166.0 266 45.5
AL2G19730 Arabidopsis lyrata HOM05D009566 ORTHO05D007629 7.0e-39 165.2 296 42.9
BcaC03g14675 Brassica carinata HOM05D009566 ORTHO05D007629 1.6e-38 164.1 308 41.2
AT1G65090 Arabidopsis thaliana HOM05D009566 ORTHO05D007629 7.7e-38 161.8 276 46.7
BolC2t08254H Brassica oleracea HOM05D009566 ORTHO05D007629 3.8e-37 159.5 309 41.1
BraA02t06358Z Brassica rapa HOM05D009566 ORTHO05D007629 1.9e-36 157.1 320 41.2
Aa31LG9G17880 Aethionema arabicum HOM05D009566 ORTHO05D007629 4.2e-36 156.0 333 38.7
THA.LOC104823805 Tarenaya hassleriana HOM05D009566 ORTHO05D007629 5.5e-36 155.6 339 36.6
BcaB05g24082 Brassica carinata HOM05D009566 ORTHO05D007629 2.3e-34 150.2 295 38.3
Aa31LG2G2280 Aethionema arabicum HOM05D009566 ORTHO05D007629 8.8e-34 148.3 270 39.3
AL7G45070 Arabidopsis lyrata HOM05D009566 ORTHO05D007629 3.8e-29 132.9 136 58.8
Sp5g19730 Schrenkiella parvula HOM05D009566 ORTHO05D007629 1.5e-20 104.4 186 43.0
Thhalv10022484m.g Eutrema salsugineum HOM05D009566 ORTHO05D007629 6.8e-18 95.5 280 37.9
Manes.08G105000 Manihot esculenta HOM05D007504 ORTHO05D007629 2.8e-16 90.1 353 27.8
Carub.0002s1043 Capsella rubella HOM05D009566 ORTHO05D007629 4.5e-14 82.8 197 39.6
CARHR056580 Cardamine hirsuta HOM05D009566 ORTHO05D007629 1.0e-13 81.6 191 37.2
SalBow6G5451 Salvia bowleyana HOM05D007504 ORTHO05D007629 2.3e-13 80.5 280 30.7
THA.LOC104821804 Tarenaya hassleriana HOM05D009566 ORTHO05D007629 5.0e-13 79.3 250 31.2
CDE05G2205 Ceratophyllum demersum HOM05D007504 ORTHO05D007629 1.9e-12 77.4 272 26.1
Cpa.g.sc123.14 Carica papaya HOM05D007504 ORTHO05D007629 2.5e-12 77.0 74 52.7
Lalb_Chr21g0311381 Lupinus albus HOM05D007504 ORTHO05D007629 2.5e-12 77.0 367 27.0
FAN09G1848 Fragaria x ananassa HOM05D007504 ORTHO05D007629 4.3e-12 76.3 78 52.6
Cfa006286 Carpinus fangiana HOM05D007504 ORTHO05D007629 1.6e-11 74.3 136 39.0
CDE05G0344 Ceratophyllum demersum HOM05D007504 ORTHO05D007629 1.6e-11 74.3 295 26.4
Haze_04521 Corylus avellana HOM05D007504 ORTHO05D007629 1.6e-11 74.3 89 46.1
FAN14G3522 Fragaria x ananassa HOM05D007504 ORTHO05D007629 2.8e-11 73.6 111 43.2
Atru.chr12.1547 Acer truncatum HOM05D007504 ORTHO05D007629 4.7e-11 72.8 111 45.0
FvH4_6g00830 Fragaria vesca HOM05D007504 ORTHO05D007629 4.7e-11 72.8 111 43.2
Duzib177G0136 Durio zibethinus HOM05D007504 ORTHO05D007629 6.1e-11 72.4 113 41.6
Thecc.05G204700 Theobroma cacao HOM05D007504 ORTHO05D007629 8.0e-11 72.0 83 47.0
GSVIVG01019149001 Vitis vinifera HOM05D007504 ORTHO05D007629 8.0e-11 72.0 84 48.8
Glyma.20G219900 Glycine max HOM05D007504 ORTHO05D007629 1.0e-10 71.6 94 47.9
QL01p050471 Quercus lobata HOM05D007504 ORTHO05D007629 1.0e-10 71.6 73 47.9
TPR.G14656 Trifolium pratense HOM05D007504 ORTHO05D007629 1.0e-10 71.6 95 43.2
Sed0012429 Sechium edule HOM05D007504 ORTHO05D007629 2.3e-10 70.5 335 26.3
TWI59G0549 Tripterygium wilfordii HOM05D007504 ORTHO05D007629 2.3e-10 70.5 235 32.3
MELO3C021807.2 Cucumis melo HOM05D007504 ORTHO05D007629 3.0e-10 70.1 346 26.6
Sabra19G0056400 Salix brachista HOM05D007504 ORTHO05D007629 3.0e-10 70.1 344 25.9
CSS0029071 Camellia sinensis var. sinensis HOM05D007504 ORTHO05D007629 4.0e-10 69.7 78 46.2
Ca_09972_v3 Cicer arietinum L. HOM05D007504 ORTHO05D007629 5.2e-10 69.3 177 34.5
RcHm_v2.0_Chr3g0448301 Rosa chinensis HOM05D007504 ORTHO05D007629 5.2e-10 69.3 212 33.5
Aqoxy2G03947 Aquilegia oxysepala HOM05D007504 ORTHO05D007629 6.8e-10 68.9 108 34.3
DCAR_029902 Daucus carota HOM05D007504 ORTHO05D007629 6.8e-10 68.9 75 50.7
PSO017G3378 Papaver somniferum HOM05D007504 ORTHO05D007629 8.9e-10 68.6 119 41.2
CSS0023929 Camellia sinensis var. sinensis HOM05D007504 ORTHO05D007629 1.2e-09 68.2 87 44.8
Lj7A601T114 Lonicera japonica HOM05D007504 ORTHO05D007629 1.2e-09 68.2 147 36.1
Potri.019G052300 Populus trichocarpa HOM05D007504 ORTHO05D007629 1.2e-09 68.2 118 37.3
Rhsim09G0131100 Rhododendron simsii HOM05D007504 ORTHO05D007629 1.2e-09 68.2 136 36.8
MD12G1258000 Malus domestica HOM05D007504 ORTHO05D007629 1.5e-09 67.8 96 44.8
MBI07_g00623_MAGBIO Magnolia biondii HOM05D007504 ORTHO05D007629 2.0e-09 67.4 85 43.5
EL10Ac4g09412 Beta vulgaris HOM05D007504 ORTHO05D007629 2.6e-09 67.0 154 32.5
TWI14G0943 Tripterygium wilfordii HOM05D007504 ORTHO05D007629 2.6e-09 67.0 119 37.8
Ciclev10011923m.g Citrus clementina HOM05D007504 ORTHO05D007629 3.4e-09 66.6 75 46.7
CiPaw.07G074500 Carya illinoinensis HOM05D007504 ORTHO05D007629 4.4e-09 66.2 182 34.6
COL.COLO4_06844 Corchorus olitorius HOM05D007504 ORTHO05D007629 5.7e-09 65.9 168 34.5
Dinv02913 Davidia involucrata HOM05D007504 ORTHO05D007629 5.7e-09 65.9 123 35.8
Oeu008540.1 Olea europaea HOM05D007504 ORTHO05D007629 5.7e-09 65.9 84 47.6
Medtr1g078420 Medicago truncatula HOM05D007504 ORTHO05D007629 7.5e-09 65.5 95 38.9
Phvul.010G077946 Phaseolus vulgaris HOM05D007504 ORTHO05D007629 7.5e-09 65.5 74 43.2
Peaxi162Scf00994g00026 Petunia axillaris HOM05D007504 ORTHO05D007629 9.8e-09 65.1 138 32.6
Solyc04g051280.4 Solanum lycopersicum HOM05D007504 ORTHO05D007629 9.8e-09 65.1 109 40.4
CAN.G29.22 Capsicum annuum HOM05D007504 ORTHO05D007629 1.3e-08 64.7 115 37.4
Nitab4.5_0000456g0090 Nicotiana tabacum HOM05D007504 ORTHO05D007629 1.3e-08 64.7 151 31.8
CsaV3_1G037800 Cucumis sativus L. HOM05D007504 ORTHO05D007629 1.7e-08 64.3 350 27.1
Sc09g0001640 Simmondsia chinensis HOM05D007504 ORTHO05D007629 1.7e-08 64.3 166 30.1
ATR0609G092 Amborella trichopoda HOM05D007504 ORTHO05D007629 2.2e-08 63.9 73 46.6
Nitab4.5_0000276g0060 Nicotiana tabacum HOM05D007504 ORTHO05D007629 2.9e-08 63.5 151 31.8
TAR636G3585 Trochodendron aralioides HOM05D007504 ORTHO05D007629 2.9e-08 63.5 142 33.1
Hund21875 Selenicereus undatus HOM05D007504 ORTHO05D007629 3.7e-08 63.2 436 23.2
Ah.06g195770 Amaranthus hybridus HOM05D007504 ORTHO05D007629 4.9e-08 62.8 103 36.9
arahy.Tifrunner.gnm1.ann1.V3BTAU Arachis hypogaea HOM05D007504 ORTHO05D007629 4.9e-08 62.8 159 31.4
Eucgr.H01377 Eucalyptus grandis HOM05D007504 ORTHO05D007629 4.9e-08 62.8 153 33.3
Psat6g051960 Pisum sativum HOM05D007504 ORTHO05D007629 4.9e-08 62.8 177 28.2
arahy.Tifrunner.gnm1.ann1.DN7JE5 Arachis hypogaea HOM05D007504 ORTHO05D007629 6.4e-08 62.4 159 30.2
ClCG01G008930 Citrullus lanatus HOM05D007504 ORTHO05D007629 6.4e-08 62.4 362 25.1
Migut.F01885 Erythranthe guttata HOM05D007504 ORTHO05D007629 6.4e-08 62.4 125 33.6
AUR62000366 Chenopodium quinoa HOM05D007504 ORTHO05D007629 8.3e-08 62.0 78 43.6
AUR62006721 Chenopodium quinoa HOM05D007504 ORTHO05D007629 8.3e-08 62.0 93 39.8
VMungo0720G1881 Vigna mungo HOM05D007504 ORTHO05D007629 8.3e-08 62.0 475 21.7
Lj5g0006161 Lotus japonicus HOM05D007504 ORTHO05D007629 1.1e-07 61.6 94 39.4
MD04G1241000 Malus domestica HOM05D007504 ORTHO05D007629 1.4e-07 61.2 163 33.7
Cc09_g03320 Coffea canephora HOM05D007504 ORTHO05D007629 2.4e-07 60.5 85 41.2
Gorai.002G147900 Gossypium raimondii HOM05D007504 ORTHO05D007629 2.4e-07 60.5 177 32.2
Lsat_1_v5_gn_8_3001 Lactuca sativa HOM05D007504 ORTHO05D007629 2.4e-07 60.5 147 33.3
Gohir.D13G093400 Gossypium hirsutum HOM05D007504 ORTHO05D007629 7.0e-07 58.9 177 31.6
SEGI_35581 Sequoiadendron giganteum HOM05D007504 ORTHO05D007629 7.0e-07 58.9 68 45.6
PGSC0003DMG400016931 Solanum tuberosum HOM05D007504 ORTHO05D007629 7.0e-07 58.9 151 32.5
Actinidia38910 Actinidia chinensis HOM05D007504 ORTHO05D007629 2.0e-06 57.4 180 32.2
PGR031G1611 Punica granatum HOM05D007504 ORTHO05D007629 2.0e-06 57.4 69 43.5
Gohir.A13G089900 Gossypium hirsutum HOM05D007504 ORTHO05D007629 2.7e-06 57.0 186 32.3


User provided reference genes

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