Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g07947 Brassica carinata HOM05D004963 ORTHO05D006638 0.0e+00 3544.6 1792 100.0
BcaC08g44458 Brassica carinata HOM05D004963 ORTHO05D006638 0.0e+00 3421.7 1792 96.3
BolC6t37108H Brassica oleracea HOM05D004963 ORTHO05D006638 0.0e+00 3402.8 1810 95.2
BraA07t29729Z Brassica rapa HOM05D004963 ORTHO05D006638 0.0e+00 3400.1 1800 95.7
C06p19070 Brassica napus HOM05D004963 ORTHO05D006638 0.0e+00 3397.4 1819 94.7
A07p20280 Brassica napus HOM05D004963 ORTHO05D006638 0.0e+00 3390.1 1820 94.6
Sp7g01430 Schrenkiella parvula HOM05D004963 ORTHO05D006638 0.0e+00 3231.8 1796 90.9
Thhalv10027618m.g Eutrema salsugineum HOM05D004963 ORTHO05D006638 0.0e+00 3169.8 1794 88.9
AL7G49340 Arabidopsis lyrata HOM05D004963 ORTHO05D006638 0.0e+00 3090.1 1806 86.7
CARHR261510 Cardamine hirsuta HOM05D004963 ORTHO05D006638 0.0e+00 3088.1 1794 87.2
AT5G40480 Arabidopsis thaliana HOM05D004963 ORTHO05D006638 0.0e+00 3061.9 1795 86.2
Carub.0007s3510 Capsella rubella HOM05D004963 ORTHO05D006638 0.0e+00 3056.5 1795 86.1
Aa31LG9G1130 Aethionema arabicum HOM05D004963 ORTHO05D006638 0.0e+00 2829.3 1841 77.9
THA.LOC104805370 Tarenaya hassleriana HOM05D004963 ORTHO05D006638 0.0e+00 2582.7 1803 72.1
Prupe.3G292000 Prunus persica HOM05D004963 ORTHO05D006638 0.0e+00 2031.5 1837 57.2
Dinv35107 Davidia involucrata HOM05D004963 ORTHO05D006638 0.0e+00 2030.8 1828 56.9
Cfa007367 Carpinus fangiana HOM05D004963 ORTHO05D006638 0.0e+00 2024.2 1841 57.3
MD17G1026700 Malus domestica HOM05D004963 ORTHO05D006638 0.0e+00 2019.2 1839 56.9
Thecc.04G017500 Theobroma cacao HOM05D004963 ORTHO05D006638 0.0e+00 2014.6 1824 56.9
GSVIVG01032403001 Vitis vinifera HOM05D004963 ORTHO05D006638 0.0e+00 2010.0 1835 56.8
Gohir.A09G029300 Gossypium hirsutum HOM05D004963 ORTHO05D006638 0.0e+00 2000.7 1800 56.4
CiPaw.03G043900 Carya illinoinensis HOM05D004963 ORTHO05D006638 0.0e+00 1994.2 1834 56.4
Potri.001G345100 Populus trichocarpa HOM05D004963 ORTHO05D006638 0.0e+00 1991.5 1826 57.0
Glyma.05G003500 Glycine max HOM05D004963 ORTHO05D006638 0.0e+00 1973.4 1831 56.3
Manes.17G112100 Manihot esculenta HOM05D004963 ORTHO05D006638 0.0e+00 1969.5 1821 56.1
TWI56G0249 Tripterygium wilfordii HOM05D004963 ORTHO05D006638 0.0e+00 1969.5 1831 56.0
TAR629G0020 Trochodendron aralioides HOM05D004963 ORTHO05D006638 0.0e+00 1964.5 1833 55.3
Haze_14742 Corylus avellana HOM05D004963 ORTHO05D006638 0.0e+00 1954.5 1856 55.8
RcHm_v2.0_Chr2g0173101 Rosa chinensis HOM05D004963 ORTHO05D006638 0.0e+00 1943.7 1828 55.4
CSS0016229 Camellia sinensis var. sinensis HOM05D004963 ORTHO05D006638 0.0e+00 1941.8 1891 53.9
PGR083G0595 Punica granatum HOM05D004963 ORTHO05D006638 0.0e+00 1941.0 1829 54.8
FvH4_6g51430 Fragaria vesca HOM05D004963 ORTHO05D006638 0.0e+00 1938.3 1829 55.2
Phvul.004G006800 Phaseolus vulgaris HOM05D004963 ORTHO05D006638 0.0e+00 1937.9 1830 55.6
Lj2g0007459 Lotus japonicus HOM05D004963 ORTHO05D006638 0.0e+00 1913.3 1838 54.5
Lju41A42T102 Lonicera japonica HOM05D004963 ORTHO05D006638 0.0e+00 1906.7 1816 55.0
Ca_04160_v3 Cicer arietinum L. HOM05D004963 ORTHO05D006638 0.0e+00 1895.2 1834 54.4
Psat1g054400 Pisum sativum HOM05D004963 ORTHO05D006638 0.0e+00 1894.4 1840 54.1
TPR.G33247 Trifolium pratense HOM05D004963 ORTHO05D006638 0.0e+00 1889.4 1836 54.0
CANSAT64G0570 Cannabis sativa HOM05D004963 ORTHO05D006638 0.0e+00 1888.2 1826 54.4
Lalb_Chr06g0175731 Lupinus albus HOM05D004963 ORTHO05D006638 0.0e+00 1885.5 1809 54.6
Medtr6g004840 Medicago truncatula HOM05D004963 ORTHO05D006638 0.0e+00 1879.0 1831 53.9
Sabra16G0224100 Salix brachista HOM05D004963 ORTHO05D006638 0.0e+00 1869.7 2032 50.3
MELO3C026582.2 Cucumis melo HOM05D004963 ORTHO05D006638 0.0e+00 1856.6 1830 52.8
arahy.Tifrunner.gnm1.ann1.8578L4 Arachis hypogaea HOM05D004963 ORTHO05D006638 0.0e+00 1850.1 1844 53.8
Nn4g22627 Nelumbo nucifera HOM05D004963 ORTHO05D006638 0.0e+00 1845.9 1721 55.3
Nitab4.5_0001040g0180 Nicotiana tabacum HOM05D004963 ORTHO05D006638 0.0e+00 1844.7 1835 52.6
COL.COLO4_29124 Corchorus olitorius HOM05D004963 ORTHO05D006638 0.0e+00 1841.6 1819 53.8
CsaV3_3G042810 Cucumis sativus L. HOM05D004963 ORTHO05D006638 0.0e+00 1837.4 1830 52.6
vmacro05867 Vaccinium macrocarpon HOM05D004963 ORTHO05D006638 0.0e+00 1828.9 1904 52.0
CAN.G257.2 Capsicum annuum HOM05D004963 ORTHO05D006638 0.0e+00 1827.4 1836 52.3
Nitab4.5_0001655g0190 Nicotiana tabacum HOM05D004963 ORTHO05D006638 0.0e+00 1812.7 1850 51.8
Rhsim10G0016800 Rhododendron simsii HOM05D004963 ORTHO05D006638 0.0e+00 1812.3 2038 48.8
Sed0022939 Sechium edule HOM05D004963 ORTHO05D006638 0.0e+00 1808.1 1829 52.0
Sopen02g019920 Solanum pennellii HOM05D004963 ORTHO05D006638 0.0e+00 1801.9 1838 52.1
VMungo0464G1605 Vigna mungo HOM05D004963 ORTHO05D006638 0.0e+00 1801.6 2132 47.1
PGSC0003DMG400008314 Solanum tuberosum HOM05D004963 ORTHO05D006638 0.0e+00 1800.8 1837 51.9
Rhsim10G0015700 Rhododendron simsii HOM05D004963 ORTHO05D006638 0.0e+00 1792.7 1862 51.8
Duzib147G0997 Durio zibethinus HOM05D004963 ORTHO05D006638 0.0e+00 1791.5 1821 51.7
Cc07_g01650 Coffea canephora HOM05D004963 ORTHO05D006638 0.0e+00 1787.7 1839 52.3
Sc03g0007420 Simmondsia chinensis HOM05D004963 ORTHO05D006638 0.0e+00 1787.7 1703 54.1
Solyc02g070810.4 Solanum lycopersicum HOM05D004963 ORTHO05D006638 0.0e+00 1786.5 1839 51.8
Peaxi162Scf00796g00213 Petunia axillaris HOM05D004963 ORTHO05D006638 0.0e+00 1784.2 1835 51.2
PSO063G6295 Papaver somniferum HOM05D004963 ORTHO05D006638 0.0e+00 1773.1 1842 50.8
Ah.03g137060 Amaranthus hybridus HOM05D004963 ORTHO05D006638 0.0e+00 1770.0 1820 51.3
Aqoxy5G03770 Aquilegia oxysepala HOM05D004963 ORTHO05D006638 0.0e+00 1760.0 1830 51.1
DCAR_001439 Daucus carota HOM05D004963 ORTHO05D006638 0.0e+00 1757.7 1831 52.3
PSO067G0032 Papaver somniferum HOM05D004963 ORTHO05D006638 0.0e+00 1754.2 1839 50.5
MSTRG.3144 Avicennia marina HOM05D004963 ORTHO05D006638 0.0e+00 1718.0 1830 50.5
AUR62043498 Chenopodium quinoa HOM05D004963 ORTHO05D006638 0.0e+00 1716.4 1821 50.9
Atru.chr6.2399 Acer truncatum HOM05D004963 ORTHO05D006638 0.0e+00 1691.8 1466 59.1
SalBow1G1005 Salvia bowleyana HOM05D004963 ORTHO05D006638 0.0e+00 1684.8 1823 49.9
SGA_v2.0_scaffold18G08276 Striga asiatica HOM05D004963 ORTHO05D006638 0.0e+00 1673.7 1835 49.9
Migut.H00075 Erythranthe guttata HOM05D004963 ORTHO05D006638 0.0e+00 1654.0 1812 49.6
AUR62028465 Chenopodium quinoa HOM05D004963 ORTHO05D006638 0.0e+00 1641.7 1857 48.7
FAN14G4225 Fragaria x ananassa HOM05D004963 ORTHO05D006638 0.0e+00 1631.7 1818 49.3
EL10Ac6g14083 Beta vulgaris HOM05D004963 ORTHO05D006638 0.0e+00 1619.4 1812 47.6
ATR0824G203 Amborella trichopoda HOM05D004963 ORTHO05D006638 0.0e+00 1566.6 1862 45.9
Eucgr.J02245 Eucalyptus grandis HOM05D004963 ORTHO05D006638 0.0e+00 1361.3 1276 54.9
Zm00001eb096130 Zea mays HOM05D004963 ORTHO05D006638 0.0e+00 1358.2 1825 41.4
Ciclev10018026m.g Citrus clementina HOM05D004963 ORTHO05D006638 0.0e+00 1307.7 1050 62.4
Oeu046826.1 Olea europaea HOM05D004963 ORTHO05D006638 0.0e+00 1218.8 1147 54.8
unitig_748.g6983 Utricularia gibba HOM05D004963 ORTHO05D006638 0.0e+00 1109.0 1431 44.7
Gohir.D09G029000 Gossypium hirsutum HOM05D004963 ORTHO05D006638 0.0e+00 1091.3 991 56.4
Mapoly0043s0050 Marchantia polymorpha HOM05D004963 ORTHO05D006638 6.1e-311 1071.6 1921 35.3
SMO145G0002 Selaginella moellendorffii HOM05D004963 ORTHO05D006638 1.5e-310 1070.5 1854 36.6
ClCG10G013880 Citrullus lanatus HOM05D004963 ORTHO05D006638 1.4e-286 990.7 943 54.8
Pp3c27_1470 Physcomitrium patens HOM05D004963 ORTHO05D006638 3.0e-284 983.0 1897 33.7
CBR_g4853 Chara braunii HOM05D004963 ORTHO05D006638 1.9e-254 884.0 1991 31.6
Migut.J01521 Erythranthe guttata HOM05D004963 ORTHO05D006638 5.2e-252 875.9 1035 47.4
Cpa.g.sc108.69 Carica papaya HOM05D004963 ORTHO05D006638 8.3e-250 868.6 1104 45.5
Ciclev10014326m.g Citrus clementina HOM05D004963 ORTHO05D006638 1.1e-212 745.3 785 51.8
ClCG10G013870 Citrullus lanatus HOM05D004963 ORTHO05D006638 1.2e-211 741.9 886 46.7
Gorai.006G033800 Gossypium raimondii HOM05D004963 ORTHO05D006638 1.2e-192 678.7 645 54.1
SEGI_19244 Sequoiadendron giganteum HOM05D004963 ORTHO05D006638 3.3e-190 670.6 876 42.9
Migut.J01523 Erythranthe guttata HOM05D004963 ORTHO05D006638 2.1e-189 667.9 842 45.7
CDE07G0232 Ceratophyllum demersum HOM05D004963 ORTHO05D006638 1.6e-181 641.7 780 46.2
CARHR149540 Cardamine hirsuta HOM05D004963 ORTHO05D006638 7.4e-166 589.7 413 75.3
arahy.Tifrunner.gnm1.ann1.WBLX3G Arachis hypogaea HOM05D004963 ORTHO05D006638 7.9e-160 569.7 656 48.5
Hma1.2p1_0999F.1_g246170 Hydrangea macrophylla HOM05D004963 ORTHO05D006638 6.3e-141 506.9 532 50.8
Os09g0565500 Oryza sativa ssp. japonica HOM05D004963 ORTHO05D006638 3.6e-128 464.5 659 41.6
Gohir.D09G029066 Gossypium hirsutum HOM05D004963 ORTHO05D006638 1.5e-121 442.6 453 48.8
Gorai.006G033900 Gossypium raimondii HOM05D004963 ORTHO05D006638 1.8e-116 425.6 435 48.7
DCAR_003836 Daucus carota HOM05D004963 ORTHO05D006638 1.9e-113 415.6 415 50.6
HPP92_013426 Vanilla planifolia HOM05D004963 ORTHO05D006638 6.0e-107 394.0 863 32.2
unitig_748.g6984 Utricularia gibba HOM05D004963 ORTHO05D006638 3.0e-106 391.7 361 56.8
Carub.0007s0778 Capsella rubella HOM05D004963 ORTHO05D006638 3.1e-103 381.7 289 69.2
CDE07G2050 Ceratophyllum demersum HOM05D004963 ORTHO05D006638 1.4e-84 319.7 380 45.8
Atru.chr6.2400 Acer truncatum HOM05D004963 ORTHO05D006638 8.7e-82 310.5 341 50.4
MBI06_g10159_MAGBIO Magnolia biondii HOM05D004963 ORTHO05D006638 5.3e-71 274.6 281 52.7
Psat5g189920 Pisum sativum HOM05D004963 ORTHO05D006638 1.9e-68 266.2 195 67.2
FAN11G1562 Fragaria x ananassa HOM05D004963 ORTHO05D006638 2.2e-61 242.7 227 53.3
CDE07G1094 Ceratophyllum demersum HOM05D004963 ORTHO05D006638 1.3e-53 216.9 315 41.3
Cpa.g.sc108.68 Carica papaya HOM05D004963 ORTHO05D006638 2.9e-53 215.7 145 71.7
FvH4_3g31750 Fragaria vesca HOM05D004963 ORTHO05D006638 2.1e-51 209.5 192 53.6
FvH4_4g00580 Fragaria vesca HOM05D004963 ORTHO05D006638 3.6e-51 208.8 192 52.6
VMungo1383G2035 Vigna mungo HOM05D004963 ORTHO05D006638 2.4e-47 196.1 288 42.7
CBR_g4854 Chara braunii HOM05D004963 ORTHO05D006638 1.5e-46 193.4 514 29.2
FAN09G2859 Fragaria x ananassa HOM05D004963 ORTHO05D006638 8.5e-45 187.6 239 47.7
CSS0027009 Camellia sinensis var. sinensis HOM05D004963 ORTHO05D006638 2.1e-43 183.0 335 37.0
Psat2g110360 Pisum sativum HOM05D002628 ORTHO05D002785 4.4e-41 175.3 281 39.1
SEGI_28921 Sequoiadendron giganteum HOM05D004963 ORTHO05D006638 1.7e-40 173.3 295 34.9
C06p05800 Brassica napus HOM05D004963 ORTHO05D021908 1.0e-37 164.1 145 62.1
C06p05790 Brassica napus HOM05D004963 ORTHO05D021908 1.1e-36 160.6 125 65.6
Os09g0565450 Oryza sativa ssp. japonica HOM05D004963 ORTHO05D006638 1.6e-35 156.8 147 55.8
Psat2g063360 Pisum sativum HOM05D004963 ORTHO05D006638 2.1e-35 156.4 164 47.6
SEGI_35499 Sequoiadendron giganteum HOM05D004963 ORTHO05D006638 5.3e-31 141.7 141 48.9
Psat5g059840 Pisum sativum HOM05D000434 ORTHO05D007220 2.9e-29 136.0 584 25.2
BcaC08g43235 Brassica carinata HOM05D004963 ORTHO05D021908 3.8e-29 135.6 104 68.3
Psat5g189840 Pisum sativum HOM05D001849 ORTHO05D004075 1.8e-26 126.7 93 67.7
Psat5g059720 Pisum sativum HOM05D000434 ORTHO05D007220 4.0e-26 125.6 191 39.8
Glyma.15G246500 Glycine max HOM05D004963 ORTHO05D006638 1.7e-24 120.2 221 35.3
Ca_06838_v3 Cicer arietinum L. HOM05D004963 ORTHO05D006638 1.8e-23 116.7 291 30.2
RcHm_v2.0_Chr5g0056391 Rosa chinensis HOM05D004963 ORTHO05D006638 1.2e-22 114.0 107 53.3
FvH4_1g22462 Fragaria vesca HOM05D004963 ORTHO05D006638 3.5e-22 112.5 94 58.5
A02p14020 Brassica napus HOM05D015603 ORTHO05D017573 5.9e-22 111.7 120 49.2
BraA02t06462Z Brassica rapa HOM05D015603 ORTHO05D017573 7.7e-22 111.3 118 49.2
FAN02G1996 Fragaria x ananassa HOM05D004963 ORTHO05D006638 5.5e-20 105.1 143 46.2
C02p22570 Brassica napus HOM05D015603 ORTHO05D017573 7.2e-20 104.8 116 51.7
BolC2t08411H Brassica oleracea HOM05D015603 ORTHO05D017573 7.2e-20 104.8 116 51.7
CDE07G0302 Ceratophyllum demersum HOM05D004963 ORTHO05D006638 1.0e-18 100.9 165 41.2
Thhalv10017260m.g Eutrema salsugineum HOM05D015603 ORTHO05D017573 1.4e-18 100.5 89 55.1
Thhalv10017271m.g Eutrema salsugineum HOM05D015603 ORTHO05D017573 1.4e-18 100.5 89 55.1
Thhalv10017254m.g Eutrema salsugineum HOM05D015603 ORTHO05D017573 3.0e-18 99.4 89 53.9
Aqoxy5G03772 Aquilegia oxysepala HOM05D004963 ORTHO05D006638 8.8e-18 97.8 145 44.8
PGR083G1349 Punica granatum HOM05D004963 ORTHO05D006638 1.2e-17 97.4 140 41.4
Carub.0006s0908 Capsella rubella HOM05D004963 ORTHO05D021908 2.8e-16 92.8 131 43.5
Zm00001eb027130 Zea mays HOM05D004963 ORTHO05D006638 1.8e-15 90.1 208 29.3
Zm00001eb387740 Zea mays HOM05D004963 ORTHO05D006638 2.5e-12 79.7 88 44.3
Hund10088 Selenicereus undatus HOM05D004963 ORTHO05D006638 1.2e-11 77.4 95 42.1
BcaC08g43232 Brassica carinata HOM05D004963 ORTHO05D039387 3.0e-10 72.8 56 67.9
Zm00001eb119700 Zea mays HOM05D004963 ORTHO05D006638 5.2e-10 72.0 86 40.7
Actinidia36871 Actinidia chinensis HOM05D004963 ORTHO05D006638 8.9e-10 71.2 88 44.3
Psat0s4196g0080 Pisum sativum HOM05D004963 ORTHO05D006638 4.4e-09 68.9 51 58.8
Psat3g009720 Pisum sativum HOM05D003492 ORTHO05D005540 5.7e-09 68.6 126 34.9
FvH4_3g30141 Fragaria vesca HOM05D002675 ORTHO05D022630 1.6e-06 60.5 139 30.2
Zm00001eb150600 Zea mays HOM05D004963 ORTHO05D006638 3.5e-06 59.3 93 37.6


User provided reference genes

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