Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g07945 Brassica carinata HOM05D005844 ORTHO05D007203 2.1e-155 552.4 282 100.0
C04p47350 Brassica napus HOM05D005844 ORTHO05D007203 5.3e-135 484.6 290 88.6
Sp7g01340 Schrenkiella parvula HOM05D005844 ORTHO05D007203 2.5e-132 475.7 290 86.9
A04p13570 Brassica napus HOM05D005844 ORTHO05D007203 3.2e-132 475.3 290 87.2
Thhalv10027875m.g Eutrema salsugineum HOM05D005844 ORTHO05D007203 8.2e-128 460.7 290 84.1
BcaB06g27527 Brassica carinata HOM05D005844 ORTHO05D007203 2.4e-127 459.1 285 85.6
Carub.0007s3499 Capsella rubella HOM05D005844 ORTHO05D007203 3.4e-118 428.7 285 79.3
AT5G40530 Arabidopsis thaliana HOM05D005844 ORTHO05D007203 3.8e-117 425.2 285 80.4
BraA04t17017Z Brassica rapa HOM05D005844 ORTHO05D007203 2.7e-115 419.1 271 83.4
BolC4t26336H Brassica oleracea HOM05D005844 ORTHO05D007203 3.9e-114 415.2 271 83.0
AL7G49290 Arabidopsis lyrata HOM05D005844 ORTHO05D007203 3.3e-113 412.1 233 88.4
THA.LOC104823955 Tarenaya hassleriana HOM05D005844 ORTHO05D007203 2.2e-112 409.5 290 75.2
Aa31LG9G1090 Aethionema arabicum HOM05D005844 ORTHO05D007203 4.5e-110 401.7 288 72.9
THA.LOC104805364 Tarenaya hassleriana HOM05D005844 ORTHO05D007203 5.5e-108 394.8 291 72.9
Potri.001G344000 Populus trichocarpa HOM05D005844 ORTHO05D007203 5.3e-103 378.3 256 73.0
Gorai.012G064700 Gossypium raimondii HOM05D005844 ORTHO05D007203 2.2e-101 372.9 284 67.3
Gohir.A05G355200 Gossypium hirsutum HOM05D005844 ORTHO05D007203 6.5e-101 371.3 286 66.8
Gohir.D04G058000 Gossypium hirsutum HOM05D005844 ORTHO05D007203 1.1e-100 370.5 286 66.8
Cpa.g.c26638.3 Carica papaya HOM05D005844 ORTHO05D007203 5.5e-100 368.2 291 67.0
FAN05G4937 Fragaria x ananassa HOM05D005844 ORTHO05D007203 5.5e-100 368.2 274 66.8
RcHm_v2.0_Chr2g0173161 Rosa chinensis HOM05D005844 ORTHO05D007203 9.4e-100 367.5 259 70.7
Duzib187G1685 Durio zibethinus HOM05D005844 ORTHO05D007203 6.7e-98 361.3 285 66.0
Cfa007347 Carpinus fangiana HOM05D005844 ORTHO05D007203 1.5e-97 360.1 234 73.9
Ciclev10016139m.g Citrus clementina HOM05D005844 ORTHO05D007203 2.6e-97 359.4 262 68.7
Actinidia36121 Actinidia chinensis HOM05D005844 ORTHO05D007203 3.3e-97 359.0 246 70.3
QL02p074142 Quercus lobata HOM05D005844 ORTHO05D007203 3.3e-97 359.0 281 65.1
Sabra16G0223300 Salix brachista HOM05D005844 ORTHO05D007203 4.4e-97 358.6 273 67.4
FAN09G1449 Fragaria x ananassa HOM05D005844 ORTHO05D007203 7.4e-97 357.8 274 65.7
COL.COLO4_29165 Corchorus olitorius HOM05D005844 ORTHO05D007203 9.7e-97 357.5 221 75.6
FAN14G2428 Fragaria x ananassa HOM05D005844 ORTHO05D007203 9.7e-97 357.5 274 66.1
Dinv33434 Davidia involucrata HOM05D005844 ORTHO05D007203 2.2e-96 356.3 237 72.2
Thecc.04G018700 Theobroma cacao HOM05D005844 ORTHO05D007203 2.2e-96 356.3 291 64.3
CsaV3_5G027090 Cucumis sativus L. HOM05D005844 ORTHO05D007203 2.8e-96 355.9 287 63.8
CiPaw.03G045000 Carya illinoinensis HOM05D005844 ORTHO05D007203 3.7e-96 355.5 275 65.5
Dinv09631 Davidia involucrata HOM05D005844 ORTHO05D007203 3.7e-96 355.5 237 71.7
FAN02G1237 Fragaria x ananassa HOM05D005844 ORTHO05D007203 6.3e-96 354.8 274 65.0
FvH4_6g51630 Fragaria vesca HOM05D005844 ORTHO05D007203 1.4e-95 353.6 274 65.3
Rhsim10G0015300 Rhododendron simsii HOM05D005844 ORTHO05D007203 1.8e-95 353.2 259 69.1
Rhsim10G0016000 Rhododendron simsii HOM05D005844 ORTHO05D007203 1.8e-95 353.2 259 69.1
vmacro05871 Vaccinium macrocarpon HOM05D005844 ORTHO05D007203 1.8e-95 353.2 292 64.0
Prupe.3G293000 Prunus persica HOM05D005844 ORTHO05D007203 2.4e-95 352.8 230 73.5
ClCG09G019300 Citrullus lanatus HOM05D005844 ORTHO05D007203 3.1e-95 352.4 287 64.1
Aqoxy5G03753 Aquilegia oxysepala HOM05D005844 ORTHO05D007203 4.1e-95 352.1 274 65.3
HanXRQChr02g0043121 Helianthus annuus HOM05D005844 ORTHO05D007203 7.0e-95 351.3 232 74.1
Actinidia05987 Actinidia chinensis HOM05D005844 ORTHO05D007203 9.1e-95 350.9 285 64.2
Hma1.2p1_2550F.1_g324230 Hydrangea macrophylla HOM05D005844 ORTHO05D007203 1.2e-94 350.5 281 64.4
Nn4g22606 Nelumbo nucifera HOM05D005844 ORTHO05D007203 1.6e-94 350.1 230 72.6
Sc16g0003190 Simmondsia chinensis HOM05D005844 ORTHO05D007203 2.0e-94 349.7 221 75.6
ECA247G4055 Erigeron canadensis HOM05D005844 ORTHO05D007203 4.5e-94 348.6 282 64.5
GSVIVG01032391001 Vitis vinifera HOM05D005844 ORTHO05D007203 4.5e-94 348.6 221 74.2
MD17G1023500 Malus domestica HOM05D005844 ORTHO05D007203 1.3e-93 347.1 290 62.8
TWI56G0011 Tripterygium wilfordii HOM05D005844 ORTHO05D007203 1.3e-93 347.1 281 63.3
Phvul.004G044500 Phaseolus vulgaris HOM05D005844 ORTHO05D007203 1.7e-93 346.7 251 67.7
CSS0012729 Camellia sinensis var. sinensis HOM05D005844 ORTHO05D007203 2.9e-93 345.9 286 63.6
Lj1g0026070 Lotus japonicus HOM05D005844 ORTHO05D007203 8.5e-93 344.4 234 73.1
PGR142G0612 Punica granatum HOM05D005844 ORTHO05D007203 3.2e-92 342.4 274 65.0
TWI36G0829 Tripterygium wilfordii HOM05D005844 ORTHO05D007203 7.2e-92 341.3 266 63.9
Medtr2g062880 Medicago truncatula HOM05D005844 ORTHO05D007203 1.6e-91 340.1 252 66.7
Medtr7g033530 Medicago truncatula HOM05D005844 ORTHO05D007203 2.1e-91 339.7 254 66.5
SalBow7G1242 Salvia bowleyana HOM05D005844 ORTHO05D007203 1.0e-90 337.4 233 71.7
Solyc02g093390.4 Solanum lycopersicum HOM05D005844 ORTHO05D007203 2.3e-90 336.3 237 67.9
VMungo0464G1123 Vigna mungo HOM05D005844 ORTHO05D007203 2.3e-90 336.3 227 71.4
Manes.15G150500 Manihot esculenta HOM05D005844 ORTHO05D007203 5.2e-90 335.1 275 64.7
SGA_v2.0_scaffold18G08274 Striga asiatica HOM05D005844 ORTHO05D007203 5.2e-90 335.1 229 70.7
CARHR261450 Cardamine hirsuta HOM05D005844 ORTHO05D007203 6.8e-90 334.7 179 92.2
Cc07_g01570 Coffea canephora HOM05D005844 ORTHO05D007203 1.5e-89 333.6 262 64.1
arahy.Tifrunner.gnm1.ann1.RG8FT8 Arachis hypogaea HOM05D005844 ORTHO05D007203 2.0e-89 333.2 220 70.5
unitig_46.g18705 Utricularia gibba HOM05D005844 ORTHO05D007203 3.4e-89 332.4 281 62.3
Eucgr.I01735 Eucalyptus grandis HOM05D005844 ORTHO05D007203 5.7e-89 331.6 279 62.0
MSTRG.3288 Avicennia marina HOM05D005844 ORTHO05D007203 7.5e-89 331.3 278 62.6
Dinv07356 Davidia involucrata HOM05D005844 ORTHO05D007203 9.8e-89 330.9 249 65.1
DCAR_021727 Daucus carota HOM05D005844 ORTHO05D007203 1.7e-88 330.1 221 71.0
Os02g0593900 Oryza sativa ssp. japonica HOM05D005844 ORTHO05D007203 2.8e-88 329.3 235 67.7
Migut.K01404 Erythranthe guttata HOM05D005844 ORTHO05D007203 4.8e-88 328.6 283 61.8
Lalb_Chr08g0243241 Lupinus albus HOM05D005844 ORTHO05D007203 4.8e-88 328.6 280 61.4
Sopen02g037980 Solanum pennellii HOM05D005844 ORTHO05D007203 1.1e-87 327.4 282 60.3
CANSAT64G0956 Cannabis sativa HOM05D005844 ORTHO05D007203 1.4e-87 327.0 292 60.6
PSO407G0181 Papaver somniferum HOM05D005844 ORTHO05D007203 1.4e-87 327.0 252 65.1
PSO111G0092 Papaver somniferum HOM05D005844 ORTHO05D007203 1.8e-87 326.6 252 65.1
Haze_14753 Corylus avellana HOM05D005844 ORTHO05D007203 7.0e-87 324.7 264 62.1
MELO3C021585.2 Cucumis melo HOM05D005844 ORTHO05D007203 1.2e-86 323.9 287 59.2
Cfa007344 Carpinus fangiana HOM05D005844 ORTHO05D007203 2.7e-86 322.8 247 66.0
PGSC0003DMG400012605 Solanum tuberosum HOM05D005844 ORTHO05D007203 3.5e-86 322.4 282 59.6
Zm00001eb205620 Zea mays HOM05D005844 ORTHO05D007203 3.5e-86 322.4 241 64.7
Nitab4.5_0003318g0030 Nicotiana tabacum HOM05D005844 ORTHO05D007203 1.7e-85 320.1 283 60.1
ATR0824G194 Amborella trichopoda HOM05D005844 ORTHO05D007203 2.2e-85 319.7 285 59.3
Psat4g044480 Pisum sativum HOM05D005844 ORTHO05D007203 7.2e-84 314.7 303 56.1
HPP92_020245 Vanilla planifolia HOM05D005844 ORTHO05D007203 6.1e-83 311.6 284 58.8
Glyma.19G056800 Glycine max HOM05D005844 ORTHO05D007203 1.5e-81 307.0 273 59.7
SMO169G0126 Selaginella moellendorffii HOM05D005844 ORTHO05D007203 4.4e-81 305.4 221 66.1
CSS0002651 Camellia sinensis var. sinensis HOM05D005844 ORTHO05D007203 5.7e-81 305.1 286 59.1
AagrBONN_evm.TU.Sc2ySwM_344.1282 Anthoceros agrestis HOM05D005844 ORTHO05D007203 9.8e-81 304.3 234 63.2
Sed0014974 Sechium edule HOM05D005844 ORTHO05D007203 9.8e-81 304.3 248 64.1
CDE09G0856 Ceratophyllum demersum HOM05D005844 ORTHO05D007203 1.7e-80 303.5 201 69.7
Nitab4.5_0001860g0130 Nicotiana tabacum HOM05D005844 ORTHO05D007203 3.7e-80 302.4 276 59.1
Mapoly0055s0119 Marchantia polymorpha HOM05D005844 ORTHO05D007203 2.0e-78 296.6 234 59.0
Ca_08532_v3 Cicer arietinum L. HOM05D005844 ORTHO05D007203 3.3e-76 289.3 273 58.6
Lj7A600G48 Lonicera japonica HOM05D005844 ORTHO05D007203 1.2e-75 287.3 183 75.4
VMungo1215G2157 Vigna mungo HOM05D005844 ORTHO05D007203 1.6e-75 287.0 189 71.4
PSO754G0028 Papaver somniferum HOM05D005844 ORTHO05D007203 1.4e-74 283.9 253 57.7
Ca_25854_v3 Cicer arietinum L. HOM05D005844 ORTHO05D007203 1.8e-74 283.5 221 64.7
Glyma.16G069400 Glycine max HOM05D005844 ORTHO05D007203 2.3e-74 283.1 260 58.1
arahy.Tifrunner.gnm1.ann1.V6CENM Arachis hypogaea HOM05D005844 ORTHO05D007203 2.6e-73 279.6 258 57.0
Pp3c18_8570 Physcomitrium patens HOM05D005844 ORTHO05D007203 4.4e-73 278.9 230 57.8
Hma1.2p1_1747F.1_g300470 Hydrangea macrophylla HOM05D005844 ORTHO05D007203 1.3e-72 277.3 183 74.3
CBR_g37477 Chara braunii HOM05D005844 ORTHO05D007203 8.3e-72 274.6 228 58.3
TAR629G2614 Trochodendron aralioides HOM05D005844 ORTHO05D007203 1.1e-71 274.2 219 64.8
Lsat_1_v5_gn_1_11001 Lactuca sativa HOM05D005844 ORTHO05D007203 1.2e-70 270.8 175 77.1
Peaxi162Scf00129g01647 Petunia axillaris HOM05D005844 ORTHO05D007203 4.6e-70 268.9 183 69.9
EL10Ac6g14092 Beta vulgaris HOM05D005844 ORTHO05D007203 3.6e-67 259.2 284 52.5
MBI06_g16054_MAGBIO Magnolia biondii HOM05D005844 ORTHO05D007203 2.3e-66 256.5 282 51.8
Cfa007349 Carpinus fangiana HOM05D005844 ORTHO05D007203 7.0e-63 245.0 241 56.4
CAN.G473.16 Capsicum annuum HOM05D005844 ORTHO05D007203 8.6e-61 238.0 168 68.5
Ah.03g137020 Amaranthus hybridus HOM05D001812 ORTHO05D001874 3.7e-56 222.6 193 59.1
MCO16G365 Micromonas commoda HOM05D005844 ORTHO05D007203 2.7e-54 216.5 231 49.8
Cre07.g323450 Chlamydomonas reinhardtii HOM05D005844 ORTHO05D007203 1.4e-47 194.1 265 41.1
Atru.chr6.2417 Acer truncatum HOM05D005844 ORTHO05D007203 1.9e-44 183.7 126 72.2
SHI16461 Sapria himalayana HOM05D005844 ORTHO05D007203 5.6e-44 182.2 309 38.2
PRCOL_00001214 Prasinoderma coloniale HOM05D005844 ORTHO05D007203 5.2e-42 175.6 273 39.6
TPR.G1078 Trifolium pratense HOM05D005844 ORTHO05D007203 6.8e-42 175.3 118 68.6
TPR.G11046 Trifolium pratense HOM05D005844 ORTHO05D007203 5.8e-41 172.2 144 60.4
TPR.G35964 Trifolium pratense HOM05D005844 ORTHO05D007203 1.1e-39 167.9 113 71.7
BolC4t27198H Brassica oleracea HOM05D005844 ORTHO05D007203 4.2e-39 166.0 177 56.5
vmacro09039 Vaccinium macrocarpon HOM05D005844 ORTHO05D007203 1.0e-37 161.4 276 41.7
TAR629G1250 Trochodendron aralioides HOM05D005844 ORTHO05D007203 1.3e-35 154.5 119 64.7
SMO202G0011 Selaginella moellendorffii HOM05D005844 ORTHO05D007203 2.0e-33 147.1 116 62.1
Cfa024741 Carpinus fangiana HOM05D005844 ORTHO05D007203 2.8e-27 126.7 259 33.2
Atru.chr2.3681 Acer truncatum HOM05D005844 ORTHO05D007203 5.3e-26 122.5 77 77.9
QL12p001810 Quercus lobata HOM05D005844 ORTHO05D007203 2.2e-24 117.1 72 73.6
Rhsim10G0015100 Rhododendron simsii HOM05D014363 ORTHO05D019497 3.2e-23 113.2 78 69.2
SEGI_32629 Sequoiadendron giganteum HOM05D005844 ORTHO05D007203 2.7e-22 110.2 81 64.2
CARHR261460 Cardamine hirsuta HOM05D005844 ORTHO05D007203 5.6e-20 102.4 56 85.7
AUR62043289 Chenopodium quinoa HOM05D005844 ORTHO05D007203 1.9e-12 77.4 77 55.8
SHI16462 Sapria himalayana HOM05D005844 ORTHO05D007203 1.2e-09 68.2 94 45.7


User provided reference genes

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