Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g07929 Brassica carinata HOM05D003681 ORTHO05D004703 0.0e+00 1405.2 735 100.0
A07p20510 Brassica napus HOM05D003681 ORTHO05D004703 0.0e+00 1372.1 735 97.3
BraA07t29742Z Brassica rapa HOM05D003681 ORTHO05D004703 0.0e+00 1369.8 741 96.8
BolC6t37131H Brassica oleracea HOM05D003681 ORTHO05D004703 0.0e+00 1367.4 741 96.5
C06p19360 Brassica napus HOM05D003681 ORTHO05D004703 0.0e+00 1366.7 735 96.7
BcaC08g44481 Brassica carinata HOM05D003681 ORTHO05D004703 0.0e+00 1366.3 735 96.7
Sp7g01150 Schrenkiella parvula HOM05D003681 ORTHO05D004703 0.0e+00 1330.5 742 94.6
BraA04t17035Z Brassica rapa HOM05D003681 ORTHO05D004703 0.0e+00 1312.7 742 93.8
C04p47540 Brassica napus HOM05D003681 ORTHO05D004703 0.0e+00 1307.0 742 93.4
A04p13760 Brassica napus HOM05D003681 ORTHO05D004703 0.0e+00 1305.4 744 93.4
AT5G40740 Arabidopsis thaliana HOM05D003681 ORTHO05D004703 0.0e+00 1300.4 742 92.2
BolC4t26356H Brassica oleracea HOM05D003681 ORTHO05D004703 0.0e+00 1299.3 742 92.5
Thhalv10027657m.g Eutrema salsugineum HOM05D003681 ORTHO05D004703 0.0e+00 1298.5 743 92.7
Carub.0007s3474 Capsella rubella HOM05D003681 ORTHO05D004703 0.0e+00 1293.9 743 91.8
AL7G49000 Arabidopsis lyrata HOM05D003681 ORTHO05D004703 0.0e+00 1292.7 742 91.8
CARHR213770 Cardamine hirsuta HOM05D003681 ORTHO05D004703 0.0e+00 1290.8 743 91.5
BcaB06g27549 Brassica carinata HOM05D003681 ORTHO05D004703 0.0e+00 1271.9 737 91.7
Aa31LG9G900 Aethionema arabicum HOM05D003681 ORTHO05D004703 0.0e+00 1254.6 748 89.0
THA.LOC104805345 Tarenaya hassleriana HOM05D003681 ORTHO05D004703 0.0e+00 1161.4 751 83.0
Cpa.g.sc130.41 Carica papaya HOM05D003681 ORTHO05D004703 2.6e-306 1055.0 747 75.8
QL02p072923 Quercus lobata HOM05D003681 ORTHO05D004703 1.8e-296 1022.3 749 73.8
Atru.chr6.2486 Acer truncatum HOM05D003681 ORTHO05D004703 7.7e-295 1016.9 748 73.9
Ciclev10014307m.g Citrus clementina HOM05D003681 ORTHO05D004703 1.2e-292 1009.6 733 74.1
Thecc.04G027500 Theobroma cacao HOM05D003681 ORTHO05D004703 8.8e-291 1003.4 746 72.7
TWI12G0555 Tripterygium wilfordii HOM05D003681 ORTHO05D004703 2.6e-290 1001.9 748 72.2
CiPaw.04G033000 Carya illinoinensis HOM05D003681 ORTHO05D004703 2.7e-287 991.9 748 72.6
CANSAT64G2654 Cannabis sativa HOM05D003681 ORTHO05D004703 5.0e-286 987.6 752 71.3
Manes.17G107300 Manihot esculenta HOM05D003681 ORTHO05D004703 1.6e-284 982.6 748 71.3
Duzib187G0106 Durio zibethinus HOM05D003681 ORTHO05D004703 3.6e-284 981.5 745 70.6
Dinv33384 Davidia involucrata HOM05D003681 ORTHO05D004703 8.0e-284 980.3 748 71.3
MD09G1017400 Malus domestica HOM05D003681 ORTHO05D004703 8.0e-284 980.3 747 72.0
Prupe.3G299500 Prunus persica HOM05D003681 ORTHO05D004703 1.4e-283 979.5 741 71.4
GSVIVG01001851001 Vitis vinifera HOM05D003681 ORTHO05D004703 2.3e-283 978.8 748 70.1
CiPaw.03G050400 Carya illinoinensis HOM05D003681 ORTHO05D004703 5.2e-283 977.6 748 71.0
CSS0025950 Camellia sinensis var. sinensis HOM05D003681 ORTHO05D004703 8.8e-283 976.9 747 70.8
TWI36G0744 Tripterygium wilfordii HOM05D003681 ORTHO05D004703 5.7e-282 974.2 748 70.3
Gohir.D09G033600 Gossypium hirsutum HOM05D003681 ORTHO05D004703 2.2e-281 972.2 763 69.7
Gorai.006G038600 Gossypium raimondii HOM05D003681 ORTHO05D004703 3.7e-281 971.5 763 69.6
Manes.15G156300 Manihot esculenta HOM05D003681 ORTHO05D004703 3.7e-281 971.5 746 70.8
Gohir.A11G065000 Gossypium hirsutum HOM05D003681 ORTHO05D004703 6.3e-281 970.7 746 70.6
Potri.001G337700 Populus trichocarpa HOM05D003681 ORTHO05D004703 6.3e-281 970.7 746 72.3
Actinidia18423 Actinidia chinensis HOM05D003681 ORTHO05D004703 4.1e-280 968.0 746 70.1
MD17G1018200 Malus domestica HOM05D003681 ORTHO05D004703 1.6e-279 966.1 746 71.2
Potri.001G337600 Populus trichocarpa HOM05D003681 ORTHO05D004703 4.5e-279 964.5 744 71.9
Glyma.05G073400 Glycine max HOM05D003681 ORTHO05D004703 1.3e-278 963.0 747 70.5
PGR142G3554 Punica granatum HOM05D003681 ORTHO05D004703 1.7e-278 962.6 747 69.7
Glyma.19G077600 Glycine max HOM05D003681 ORTHO05D004703 8.6e-278 960.3 747 70.4
Gohir.A09G033400 Gossypium hirsutum HOM05D003681 ORTHO05D004703 1.1e-277 959.9 763 68.8
Phvul.004G057300 Phaseolus vulgaris HOM05D003681 ORTHO05D004703 1.5e-277 959.5 750 70.1
Eucgr.I01693 Eucalyptus grandis HOM05D003681 ORTHO05D004703 1.9e-277 959.1 746 69.4
VMungo0464G1197 Vigna mungo HOM05D003681 ORTHO05D004703 5.5e-277 957.6 745 70.2
Haze_14813 Corylus avellana HOM05D003681 ORTHO05D004703 7.2e-277 957.2 758 69.8
Dinv25694 Davidia involucrata HOM05D003681 ORTHO05D004703 6.1e-276 954.1 748 69.3
Cfa007279 Carpinus fangiana HOM05D003681 ORTHO05D004703 1.0e-275 953.4 717 72.1
COL.COLO4_29274 Corchorus olitorius HOM05D003681 ORTHO05D004703 1.4e-275 953.0 737 69.9
CsaV3_3G027310 Cucumis sativus L. HOM05D003681 ORTHO05D004703 4.0e-275 951.4 752 69.8
Gohir.D11G069300 Gossypium hirsutum HOM05D003681 ORTHO05D004703 4.4e-274 948.0 746 69.6
Gohir.D10G085200 Gossypium hirsutum HOM05D003681 ORTHO05D004703 9.8e-274 946.8 746 68.9
Gorai.007G074100 Gossypium raimondii HOM05D003681 ORTHO05D004703 9.8e-274 946.8 746 69.7
Sed0015235 Sechium edule HOM05D003681 ORTHO05D004703 2.8e-273 945.3 746 69.3
Gorai.011G093100 Gossypium raimondii HOM05D003681 ORTHO05D004703 8.3e-273 943.7 746 68.9
Actinidia16950 Actinidia chinensis HOM05D003681 ORTHO05D004703 1.1e-272 943.3 746 68.2
TAR374G1530 Trochodendron aralioides HOM05D003681 ORTHO05D004703 5.4e-272 941.0 747 68.1
ClCG05G013220 Citrullus lanatus HOM05D003681 ORTHO05D004703 7.0e-272 940.6 747 69.2
RcHm_v2.0_Chr2g0174171 Rosa chinensis HOM05D003681 ORTHO05D004703 1.2e-271 939.9 747 69.9
Lj2g0006828 Lotus japonicus HOM05D003681 ORTHO05D004703 1.7e-270 936.0 748 69.4
arahy.Tifrunner.gnm1.ann1.0QF2GW Arachis hypogaea HOM05D003681 ORTHO05D004703 1.1e-269 933.3 747 69.5
Sc03g0006880 Simmondsia chinensis HOM05D003681 ORTHO05D004703 1.1e-269 933.3 745 67.9
PGSC0003DMG400006971 Solanum tuberosum HOM05D003681 ORTHO05D004703 2.1e-268 929.1 745 67.8
Sed0021158 Sechium edule HOM05D003681 ORTHO05D004703 6.1e-268 927.5 746 68.8
Aqoxy3G01435 Aquilegia oxysepala HOM05D003681 ORTHO05D004703 1.8e-267 926.0 750 68.0
CSS0035050 Camellia sinensis var. sinensis HOM05D003681 ORTHO05D004703 1.8e-267 926.0 746 67.8
Sabra16G0218500 Salix brachista HOM05D003681 ORTHO05D004703 8.9e-267 923.7 748 69.0
Sopen02g017120 Solanum pennellii HOM05D003681 ORTHO05D004703 2.6e-266 922.2 747 67.3
Lalb_Chr02g0157941 Lupinus albus HOM05D003681 ORTHO05D004703 5.7e-266 921.0 743 68.1
Psat1g082400 Pisum sativum HOM05D003681 ORTHO05D004703 2.2e-265 919.1 748 69.1
FAN14G5093 Fragaria x ananassa HOM05D003681 ORTHO05D004703 6.4e-265 917.5 765 67.7
FvH4_6g52640 Fragaria vesca HOM05D003681 ORTHO05D004703 8.3e-265 917.1 747 68.7
TAR622G1195 Trochodendron aralioides HOM05D003681 ORTHO05D004703 1.4e-264 916.4 749 66.5
Lj7A605G77 Lonicera japonica HOM05D003681 ORTHO05D004703 4.1e-264 914.8 739 68.9
PGSC0003DMG400020227 Solanum tuberosum HOM05D003681 ORTHO05D004703 4.1e-264 914.8 744 68.1
CAN.G1057.25 Capsicum annuum HOM05D003681 ORTHO05D004703 5.4e-264 914.4 747 67.1
vmacro05923 Vaccinium macrocarpon HOM05D003681 ORTHO05D004703 7.0e-264 914.1 731 68.7
Sopen02g038450 Solanum pennellii HOM05D003681 ORTHO05D004703 9.2e-264 913.7 744 67.7
CAN.G473.58 Capsicum annuum HOM05D003681 ORTHO05D004703 2.0e-263 912.5 747 67.3
Solyc02g093810.3 Solanum lycopersicum HOM05D003681 ORTHO05D004703 1.3e-262 909.8 744 67.2
FAN09G4630 Fragaria x ananassa HOM05D003681 ORTHO05D004703 4.3e-261 904.8 765 66.8
Cc07_g00400 Coffea canephora HOM05D003681 ORTHO05D004703 1.2e-260 903.3 744 66.9
PSO017G2495 Papaver somniferum HOM05D003681 ORTHO05D004703 2.1e-260 902.5 757 65.9
FAN02G4174 Fragaria x ananassa HOM05D003681 ORTHO05D004703 1.1e-259 900.2 747 67.7
Solyc02g067990.3 Solanum lycopersicum HOM05D003681 ORTHO05D004703 1.1e-259 900.2 730 67.1
Nn4g22444 Nelumbo nucifera HOM05D003681 ORTHO05D004703 2.3e-259 899.0 751 66.4
FAN05G4404 Fragaria x ananassa HOM05D003681 ORTHO05D004703 3.4e-258 895.2 792 64.9
Hund06716 Selenicereus undatus HOM05D003681 ORTHO05D004703 1.1e-256 890.2 731 66.3
Lalb_Chr21g0317601 Lupinus albus HOM05D003681 ORTHO05D004703 2.4e-256 889.0 743 66.4
Medtr6g022730 Medicago truncatula HOM05D003681 ORTHO05D004703 3.2e-256 888.6 748 67.6
Peaxi162Scf00420g00351 Petunia axillaris HOM05D003681 ORTHO05D004703 5.4e-256 887.9 730 66.3
Migut.H00059 Erythranthe guttata HOM05D003681 ORTHO05D004703 1.6e-255 886.3 744 66.9
Nitab4.5_0000040g0490 Nicotiana tabacum HOM05D003681 ORTHO05D004703 2.0e-255 885.9 750 65.7
EL10Ac4g08610 Beta vulgaris HOM05D003681 ORTHO05D004703 1.0e-254 883.6 734 66.6
MSTRG.3111 Avicennia marina HOM05D003681 ORTHO05D004703 1.3e-254 883.2 745 66.0
Oeu050433.3 Olea europaea HOM05D003681 ORTHO05D004703 1.9e-253 879.4 754 64.6
SGA_v2.0_scaffold18G08242 Striga asiatica HOM05D003681 ORTHO05D004703 4.3e-253 878.2 759 65.2
CSS0007013 Camellia sinensis var. sinensis HOM05D003681 ORTHO05D004703 9.5e-253 877.1 700 67.4
PSO478G5006 Papaver somniferum HOM05D003681 ORTHO05D004703 9.5e-253 877.1 751 64.7
TAR371G0788 Trochodendron aralioides HOM05D003681 ORTHO05D004703 9.5e-253 877.1 749 65.0
AUR62036017 Chenopodium quinoa HOM05D003681 ORTHO05D004703 1.6e-252 876.3 730 67.1
Sabra16G0218400 Salix brachista HOM05D003681 ORTHO05D004703 6.2e-252 874.4 731 67.7
vmacro18313 Vaccinium macrocarpon HOM05D003681 ORTHO05D004703 8.9e-251 870.5 744 64.8
MBI11_g11079_MAGBIO Magnolia biondii HOM05D003681 ORTHO05D004703 1.2e-250 870.2 755 62.6
Rhsim10G0011100 Rhododendron simsii HOM05D003681 ORTHO05D004703 2.6e-250 869.0 733 65.8
Nitab4.5_0008718g0020 Nicotiana tabacum HOM05D003681 ORTHO05D004703 4.4e-250 868.2 736 65.4
Hma1.2p1_0279F.1_g112260 Hydrangea macrophylla HOM05D003681 ORTHO05D004703 9.9e-250 867.1 790 62.2
Actinidia36165 Actinidia chinensis HOM05D003681 ORTHO05D004703 2.9e-249 865.5 729 65.4
Ca_04403_v3 Cicer arietinum L. HOM05D003681 ORTHO05D004703 1.9e-248 862.8 731 67.6
SalBow1G2960 Salvia bowleyana HOM05D003681 ORTHO05D004703 4.1e-248 861.7 728 66.2
SalBow1G7977 Salvia bowleyana HOM05D003681 ORTHO05D004703 4.1e-248 861.7 728 66.2
HanXRQChr07g0199161 Helianthus annuus HOM05D003681 ORTHO05D004703 2.7e-247 859.0 746 65.1
ECA238G4183 Erigeron canadensis HOM05D003681 ORTHO05D004703 1.2e-244 850.1 723 65.4
Rhsim08G0046300 Rhododendron simsii HOM05D003681 ORTHO05D004703 2.2e-241 839.3 751 62.6
Oeu058755.3 Olea europaea HOM05D003681 ORTHO05D004703 3.8e-241 838.6 787 61.0
Peaxi162Scf00080g01724 Petunia axillaris HOM05D003681 ORTHO05D004703 4.9e-241 838.2 733 64.1
Sc03g0007020 Simmondsia chinensis HOM05D003681 ORTHO05D004703 7.1e-240 834.3 743 62.9
Nitab4.5_0001863g0130 Nicotiana tabacum HOM05D003681 ORTHO05D004703 2.1e-239 832.8 725 63.7
AUR62035509 Chenopodium quinoa HOM05D003681 ORTHO05D004703 3.0e-238 828.9 716 65.5
SGA_v2.0_scaffold135G34941 Striga asiatica HOM05D003681 ORTHO05D004703 1.4e-232 810.1 776 60.8
Lj1g0019639 Lotus japonicus HOM05D003681 ORTHO05D004703 4.2e-232 808.5 752 61.6
TPR.G36528 Trifolium pratense HOM05D003681 ORTHO05D004703 4.0e-227 792.0 803 60.1
Gohir.A10G160600 Gossypium hirsutum HOM05D003681 ORTHO05D004703 5.6e-221 771.5 553 73.8
Os02g0329300 Oryza sativa ssp. japonica HOM05D003681 ORTHO05D004703 1.3e-220 770.4 749 59.5
Lsat_1_v5_gn_2_93641 Lactuca sativa HOM05D003681 ORTHO05D004703 1.6e-220 770.0 752 60.6
HPP92_006269 Vanilla planifolia HOM05D003681 ORTHO05D004703 9.0e-211 737.6 738 57.7
CDE07G0234 Ceratophyllum demersum HOM05D003681 ORTHO05D004703 3.2e-208 729.2 767 55.5
Zm00001eb235200 Zea mays HOM05D003681 ORTHO05D004703 3.7e-204 715.7 734 58.0
ATR0824G011 Amborella trichopoda HOM05D003681 ORTHO05D004703 1.8e-203 713.4 724 57.3
TAR374G1355 Trochodendron aralioides HOM05D003681 ORTHO05D004703 7.7e-194 681.4 440 79.8
unitig_21.g20482 Utricularia gibba HOM05D003681 ORTHO05D004703 3.1e-187 659.4 767 52.2
CDE04G2610 Ceratophyllum demersum HOM05D003681 ORTHO05D004703 9.1e-179 631.3 734 51.4
unitig_744.g24365 Utricularia gibba HOM05D003681 ORTHO05D004703 4.1e-171 605.9 626 56.4
QL07p006188 Quercus lobata HOM05D003681 ORTHO05D004703 1.1e-160 571.2 372 80.1
DCAR_011289 Daucus carota HOM05D003681 ORTHO05D004703 1.0e-158 564.7 580 57.6
Mapoly0032s0042 Marchantia polymorpha HOM05D003681 ORTHO05D004703 1.9e-139 500.7 742 44.6
SHI03860 Sapria himalayana HOM05D003681 ORTHO05D004703 1.3e-132 478.0 439 62.0
SMO367G0854 Selaginella moellendorffii HOM05D003681 ORTHO05D004703 1.4e-131 474.6 619 47.8
QL09p045970 Quercus lobata HOM05D003681 ORTHO05D004703 2.0e-125 454.1 303 78.2
Pp3c13_14720 Physcomitrium patens HOM05D003681 ORTHO05D004703 3.5e-122 443.4 755 40.8
Pp3c13_14730 Physcomitrium patens HOM05D003681 ORTHO05D004703 3.5e-122 443.4 755 40.8
Pp3c4_18170 Physcomitrium patens HOM05D003681 ORTHO05D004703 1.6e-119 434.5 774 40.4
Pp3c3_25790 Physcomitrium patens HOM05D003681 ORTHO05D004703 4.2e-115 419.9 504 48.4
MELO3C014854.2 Cucumis melo HOM05D003681 ORTHO05D004703 2.5e-112 410.6 448 54.9
SEGI_13919 Sequoiadendron giganteum HOM05D003681 ORTHO05D004703 8.4e-100 369.0 350 59.4
Actinidia35791 Actinidia chinensis HOM05D003681 ORTHO05D004703 3.0e-89 334.0 287 65.5
CBR_g66670 Chara braunii HOM05D003681 ORTHO05D004703 3.9e-89 333.6 481 42.6
SGA_v2.0_scaffold135G34947 Striga asiatica HOM05D003681 ORTHO05D004703 6.7e-89 332.8 258 69.4
RcHm_v2.0_Chr2g0109021 Rosa chinensis HOM05D002608 ORTHO05D004703 2.9e-84 317.4 281 62.6
Nn3g16565 Nelumbo nucifera HOM05D003681 ORTHO05D004703 2.0e-80 304.7 184 84.8
MBI06_g35146_MAGBIO Magnolia biondii HOM05D003681 ORTHO05D004703 2.6e-72 277.7 355 48.5
SMO367G0212 Selaginella moellendorffii HOM05D003681 ORTHO05D004703 3.0e-65 254.2 612 36.3
AagrBONN_evm.TU.Sc2ySwM_228.437 Anthoceros agrestis HOM05D003681 ORTHO05D004703 1.3e-63 248.8 419 39.9
RcHm_v2.0_Chr5g0047251 Rosa chinensis HOM05D002608 ORTHO05D021346 1.3e-55 222.2 459 37.0
SMO367G0417 Selaginella moellendorffii HOM05D003681 ORTHO05D004703 9.4e-51 206.1 632 33.5
TAR629G3339 Trochodendron aralioides HOM05D003681 ORTHO05D030546 5.7e-48 196.8 632 29.3
Lsat_1_v5_gn_3_79520 Lactuca sativa HOM05D003681 ORTHO05D004703 4.7e-42 177.2 191 54.5
RcHm_v2.0_Chr6g0248701 Rosa chinensis HOM05D002608 ORTHO05D013040 1.3e-39 169.1 106 78.3
SMO275G0043 Selaginella moellendorffii HOM05D003681 ORTHO05D030546 2.9e-36 157.9 131 64.9
BcaC05g26953 Brassica carinata HOM05D003681 ORTHO05D024003 1.2e-32 146.0 72 98.6
C05p28020 Brassica napus HOM05D003681 ORTHO05D024003 1.2e-32 146.0 72 98.6
DCAR_011288 Daucus carota HOM05D003681 ORTHO05D004703 1.3e-31 142.5 167 52.1
BolC5t31529H Brassica oleracea HOM05D003681 ORTHO05D024003 1.9e-30 138.7 72 97.2
RcHm_v2.0_Chr2g0096321 Rosa chinensis HOM05D003681 ORTHO05D004703 1.9e-30 138.7 90 75.6
RcHm_v2.0_Chr5g0045391 Rosa chinensis HOM05D003681 ORTHO05D004703 1.9e-30 138.7 90 75.6
RcHm_v2.0_Chr2g0166591 Rosa chinensis HOM05D003681 ORTHO05D004703 4.6e-29 134.0 76 89.5
SHI03859 Sapria himalayana HOM05D000105 ORTHO05D000023 6.8e-25 120.2 293 34.8
RcHm_v2.0_Chr6g0248711 Rosa chinensis HOM05D003681 ORTHO05D030546 1.5e-19 102.4 51 94.1
MBI02_g11376_MAGBIO Magnolia biondii HOM05D003681 ORTHO05D024003 6.2e-18 97.1 60 71.7
SEGI_23209 Sequoiadendron giganteum HOM05D003681 ORTHO05D004703 1.4e-17 95.9 281 34.2
Lsat_1_v5_gn_2_93681 Lactuca sativa HOM05D006130 ORTHO05D007491 4.0e-17 94.4 50 90.0
Hma1.2p1_0026F.1_g016370 Hydrangea macrophylla HOM05D003681 ORTHO05D004703 3.4e-16 91.3 226 32.7
vmacro18312 Vaccinium macrocarpon HOM05D004367 ORTHO05D004937 1.7e-15 89.0 220 34.1
SEGI_03694 Sequoiadendron giganteum HOM05D003681 ORTHO05D024003 6.4e-15 87.0 60 65.0
SMO275G0001 Selaginella moellendorffii HOM05D003681 ORTHO05D004703 1.9e-14 85.5 84 58.3
ECA247G3396 Erigeron canadensis HOM05D003681 ORTHO05D004703 4.1e-14 84.3 69 65.2
SMO367G0834 Selaginella moellendorffii HOM05D003681 ORTHO05D030546 2.1e-13 82.0 85 54.1
VMungo1127G0394 Vigna mungo HOM05D003681 ORTHO05D004703 8.9e-09 66.6 87 48.3


User provided reference genes

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