Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g07920 Brassica carinata HOM05D005765 ORTHO05D002313 1.2e-29 132.5 64 100.0
Sp7g00970 Schrenkiella parvula HOM05D005765 ORTHO05D002313 1.0e-22 109.4 60 86.7
Thhalv10027943m.g Eutrema salsugineum HOM05D005765 ORTHO05D002313 1.8e-22 108.6 60 86.7
BcaC02g08988 Brassica carinata HOM05D005765 ORTHO05D002313 2.3e-22 108.2 60 86.7
C04p48040 Brassica napus HOM05D005765 ORTHO05D002313 2.3e-22 108.2 60 86.7
BolC4t26396H Brassica oleracea HOM05D005765 ORTHO05D002313 2.3e-22 108.2 60 86.7
BcaB06g27577 Brassica carinata HOM05D005765 ORTHO05D002313 4.0e-22 107.5 60 85.0
A04p14010 Brassica napus HOM05D005765 ORTHO05D002313 4.0e-22 107.5 60 83.3
BraA04t17063Z Brassica rapa HOM05D005765 ORTHO05D002313 4.0e-22 107.5 60 83.3
AL7G48600 Arabidopsis lyrata HOM05D005765 ORTHO05D002313 5.7e-21 103.6 60 80.0
CARHR213430 Cardamine hirsuta HOM05D005765 ORTHO05D002313 5.7e-21 103.6 60 80.0
AT5G40950 Arabidopsis thaliana HOM05D005765 ORTHO05D002313 3.7e-20 100.9 60 76.7
Aa31LG9G720 Aethionema arabicum HOM05D005765 ORTHO05D002313 8.3e-20 99.8 60 78.3
Carub.0007s3455 Capsella rubella HOM05D005765 ORTHO05D002313 4.0e-14 80.9 60 63.3
AUR62017836 Chenopodium quinoa HOM05D005765 ORTHO05D002313 1.5e-13 79.0 60 68.3
EL10Ac5g10709 Beta vulgaris HOM05D005765 ORTHO05D002313 2.0e-13 78.6 60 66.7
CANSAT64G0001 Cannabis sativa HOM05D005765 ORTHO05D002313 3.4e-13 77.8 60 68.3
AUR62003522 Chenopodium quinoa HOM05D005765 ORTHO05D002313 4.4e-13 77.4 60 66.7
Ah.03g147540 Amaranthus hybridus HOM05D005765 ORTHO05D002313 1.1e-11 72.8 60 63.3
THA.LOC104825626 Tarenaya hassleriana HOM05D005765 ORTHO05D002313 1.1e-11 72.8 61 67.2
Aqoxy3G01560 Aquilegia oxysepala HOM05D005765 ORTHO05D002313 2.4e-11 71.6 60 61.7
Sed0006067 Sechium edule HOM05D005765 ORTHO05D002313 3.2e-11 71.2 60 66.7
CsaV3_2G034130 Cucumis sativus L. HOM05D005765 ORTHO05D002313 4.1e-11 70.9 60 66.7
Ciclev10016825m.g Citrus clementina HOM05D005765 ORTHO05D002313 5.4e-11 70.5 60 65.0
Haze_14881 Corylus avellana HOM05D005765 ORTHO05D002313 1.2e-10 69.3 60 60.0
Atru.chr6.2579 Acer truncatum HOM05D005765 ORTHO05D002313 2.0e-10 68.6 60 60.0
RcHm_v2.0_Chr2g0175661 Rosa chinensis HOM05D005765 ORTHO05D002313 2.0e-10 68.6 60 65.0
TAR374G0284 Trochodendron aralioides HOM05D005765 ORTHO05D002313 2.0e-10 68.6 60 63.3
Cfa007223 Carpinus fangiana HOM05D005765 ORTHO05D002313 3.5e-10 67.8 60 58.3
Actinidia30872 Actinidia chinensis HOM05D005765 ORTHO05D002313 4.6e-10 67.4 60 61.7
Nitab4.5_0000559g0370 Nicotiana tabacum HOM05D005765 ORTHO05D002313 4.6e-10 67.4 62 61.3
Nitab4.5_0005161g0040 Nicotiana tabacum HOM05D005765 ORTHO05D002313 4.6e-10 67.4 62 61.3
Solyc11g068820.3 Solanum lycopersicum HOM05D005765 ORTHO05D002313 4.6e-10 67.4 57 63.2
Sopen11g027540 Solanum pennellii HOM05D005765 ORTHO05D002313 4.6e-10 67.4 57 63.2
PGSC0003DMG400019631 Solanum tuberosum HOM05D005765 ORTHO05D002313 4.6e-10 67.4 57 63.2
MD17G1000400 Malus domestica HOM05D005765 ORTHO05D002313 6.0e-10 67.0 60 63.3
Phvul.005G031700 Phaseolus vulgaris HOM05D005765 ORTHO05D002313 6.0e-10 67.0 60 63.3
VMungo1080G1067 Vigna mungo HOM05D005765 ORTHO05D002313 6.0e-10 67.0 60 65.0
CARHR033260 Cardamine hirsuta HOM05D005765 ORTHO05D002313 7.8e-10 66.6 44 70.5
ClCG11G007120 Citrullus lanatus HOM05D005765 ORTHO05D002313 7.8e-10 66.6 60 63.3
Lj7C610T3 Lonicera japonica HOM05D005765 ORTHO05D002313 7.8e-10 66.6 60 60.0
Eucgr.I01643 Eucalyptus grandis HOM05D005765 ORTHO05D002313 1.0e-09 66.2 60 61.7
QL02p071244 Quercus lobata HOM05D005765 ORTHO05D002313 1.0e-09 66.2 59 55.9
MBI11_g24616_MAGBIO Magnolia biondii HOM05D005765 ORTHO05D002313 1.3e-09 65.9 60 60.0
Hund04356 Selenicereus undatus HOM05D005765 ORTHO05D002313 1.7e-09 65.5 60 58.3
Cpa.g.sc171.10 Carica papaya HOM05D005765 ORTHO05D002313 2.3e-09 65.1 60 65.0
CiPaw.04G036800 Carya illinoinensis HOM05D005765 ORTHO05D002313 2.3e-09 65.1 60 60.0
PGR142G2888 Punica granatum HOM05D005765 ORTHO05D002313 2.3e-09 65.1 62 59.7
Migut.F00059 Erythranthe guttata HOM05D005765 ORTHO05D002313 3.9e-09 64.3 61 57.4
Potri.001G329500 Populus trichocarpa HOM05D005765 ORTHO05D002313 3.9e-09 64.3 60 58.3
TWI34G0325 Tripterygium wilfordii HOM05D005765 ORTHO05D002313 3.9e-09 64.3 59 62.7
HanXRQChr14g0450801 Helianthus annuus HOM05D005765 ORTHO05D002313 5.0e-09 63.9 63 60.3
SalBow4G0293 Salvia bowleyana HOM05D005765 ORTHO05D002313 5.0e-09 63.9 54 61.1
SalBow4G2955 Salvia bowleyana HOM05D005765 ORTHO05D002313 5.0e-09 63.9 54 61.1
Manes.15G161500 Manihot esculenta HOM05D005765 ORTHO05D002313 6.6e-09 63.5 60 58.3
Peaxi162Scf00700g00029 Petunia axillaris HOM05D005765 ORTHO05D002313 6.6e-09 63.5 61 59.0
Sed0017038 Sechium edule HOM05D005765 ORTHO05D002313 6.6e-09 63.5 60 61.7
TWI34G1681 Tripterygium wilfordii HOM05D005765 ORTHO05D002313 6.6e-09 63.5 59 62.7
DCAR_015103 Daucus carota HOM05D005765 ORTHO05D002313 8.6e-09 63.2 60 60.0
Dinv25656 Davidia involucrata HOM05D005765 ORTHO05D002313 8.6e-09 63.2 60 58.3
Prupe.3G306900 Prunus persica HOM05D005765 ORTHO05D002313 8.6e-09 63.2 60 60.0
SGA_v2.0_scaffold44G16916 Striga asiatica HOM05D005765 ORTHO05D002313 8.6e-09 63.2 49 65.3
FvH4_6g53590 Fragaria vesca HOM05D005765 ORTHO05D002313 1.1e-08 62.8 60 61.7
FAN02G1386 Fragaria x ananassa HOM05D005765 ORTHO05D002313 1.1e-08 62.8 60 61.7
FAN05G2595 Fragaria x ananassa HOM05D005765 ORTHO05D002313 1.1e-08 62.8 60 61.7
FAN09G1054 Fragaria x ananassa HOM05D005765 ORTHO05D002313 1.1e-08 62.8 60 61.7
FAN14G1527 Fragaria x ananassa HOM05D005765 ORTHO05D002313 1.1e-08 62.8 60 61.7
Oeu005105.1 Olea europaea HOM05D005765 ORTHO05D002313 1.5e-08 62.4 60 58.3
Cc07_g00870 Coffea canephora HOM05D005765 ORTHO05D002313 1.9e-08 62.0 60 55.0
ATR0561G222 Amborella trichopoda HOM05D005765 ORTHO05D002313 2.5e-08 61.6 53 58.5
MD09G1010200 Malus domestica HOM05D005765 ORTHO05D002313 2.5e-08 61.6 60 58.3
MD00G1153700 Malus domestica HOM05D005765 ORTHO05D002313 3.3e-08 61.2 52 63.5
ECA238G0681 Erigeron canadensis HOM05D005765 ORTHO05D002313 4.3e-08 60.8 61 57.4
PSO017G0717 Papaver somniferum HOM05D005765 ORTHO05D002313 4.3e-08 60.8 60 53.3
PSO478G4423 Papaver somniferum HOM05D005765 ORTHO05D002313 4.3e-08 60.8 60 53.3
Sabra16G0210900 Salix brachista HOM05D005765 ORTHO05D002313 5.6e-08 60.5 60 55.0
Actinidia04437 Actinidia chinensis HOM05D001420 ORTHO05D009292 9.5e-08 59.7 60 60.0
CSS0026879 Camellia sinensis var. sinensis HOM05D005765 ORTHO05D002313 1.2e-07 59.3 56 58.9
Hma1.2p1_1057F.1_g252820 Hydrangea macrophylla HOM05D005765 ORTHO05D002313 1.6e-07 58.9 60 56.7
Thecc.04G037800 Theobroma cacao HOM05D005765 ORTHO05D002313 1.6e-07 58.9 60 55.0
arahy.Tifrunner.gnm1.ann1.JYGZ5B Arachis hypogaea HOM05D005765 ORTHO05D002313 2.1e-07 58.5 60 56.7
arahy.Tifrunner.gnm1.ann1.ZMYY1J Arachis hypogaea HOM05D005765 ORTHO05D002313 2.1e-07 58.5 60 56.7
Duzib187G1674 Durio zibethinus HOM05D005765 ORTHO05D002313 2.1e-07 58.5 60 55.0
Lsat_1_v5_gn_2_93120 Lactuca sativa HOM05D005765 ORTHO05D002313 2.1e-07 58.5 67 52.2
CAN.G792.8 Capsicum annuum HOM05D005765 ORTHO05D002313 2.8e-07 58.2 54 55.6
CDE05G1062 Ceratophyllum demersum HOM05D005765 ORTHO05D002313 4.7e-07 57.4 59 57.6
Gohir.D09G037100 Gossypium hirsutum HOM05D005765 ORTHO05D002313 4.7e-07 57.4 60 53.3
Gorai.006G042400 Gossypium raimondii HOM05D005765 ORTHO05D002313 4.7e-07 57.4 60 53.3
CDE05G0355 Ceratophyllum demersum HOM05D005765 ORTHO05D002313 1.1e-06 56.2 59 55.9
Glyma.11G151300 Glycine max HOM05D005765 ORTHO05D002313 1.1e-06 56.2 60 56.7
Nn3g16448 Nelumbo nucifera HOM05D005765 ORTHO05D002313 1.1e-06 56.2 61 52.5
CDE05G3217 Ceratophyllum demersum HOM05D005765 ORTHO05D002313 1.4e-06 55.8 59 55.9
arahy.Tifrunner.gnm1.ann1.9892BY Arachis hypogaea HOM05D005765 ORTHO05D002313 2.3e-06 55.1 60 53.3
arahy.Tifrunner.gnm1.ann1.C2TYHM Arachis hypogaea HOM05D005765 ORTHO05D002313 2.3e-06 55.1 60 55.0
BolC6t37144H Brassica oleracea HOM05D005765 ORTHO05D002313 2.3e-06 55.1 28 85.7
Gohir.A09G036100 Gossypium hirsutum HOM05D005765 ORTHO05D002313 2.3e-06 55.1 60 51.7
Glyma.04G139200 Glycine max HOM05D005765 ORTHO05D002313 8.9e-06 53.1 60 55.0
GSVIVG01033086001 Vitis vinifera HOM05D005765 ORTHO05D002313 8.9e-06 53.1 60 51.7


User provided reference genes

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