Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g07895 Brassica carinata HOM05D000932 ORTHO05D000729 3.1e-125 451.8 232 100.0
A04p14510 Brassica napus HOM05D000932 ORTHO05D000729 5.0e-107 391.3 235 86.8
BraA04t17096Z Brassica rapa HOM05D000932 ORTHO05D000729 5.0e-107 391.3 235 86.8
BcaC08g44527 Brassica carinata HOM05D000932 ORTHO05D000729 1.5e-106 389.8 225 89.8
C06p19800 Brassica napus HOM05D000932 ORTHO05D000729 1.5e-106 389.8 225 89.8
BolC6t37167H Brassica oleracea HOM05D000932 ORTHO05D000729 7.2e-106 387.5 225 88.9
BcaB06g27617 Brassica carinata HOM05D000932 ORTHO05D000729 4.7e-105 384.8 235 86.4
C04p48430 Brassica napus HOM05D000932 ORTHO05D000729 5.5e-98 361.3 235 80.9
BolC4t26435H Brassica oleracea HOM05D000932 ORTHO05D000729 5.5e-98 361.3 235 80.9
BcaC02g08961 Brassica carinata HOM05D000932 ORTHO05D000729 3.6e-97 358.6 236 80.1
Thhalv10028337m.g Eutrema salsugineum HOM05D000932 ORTHO05D000729 5.7e-95 351.3 233 79.0
Sp7g00570 Schrenkiella parvula HOM05D000932 ORTHO05D000729 8.3e-94 347.4 239 77.8
SpUn0010_0050 Schrenkiella parvula HOM05D000932 ORTHO05D000729 1.1e-90 337.0 235 76.2
CARHR212950 Cardamine hirsuta HOM05D000932 ORTHO05D000729 1.2e-79 300.4 244 70.5
AL7G48040 Arabidopsis lyrata HOM05D000932 ORTHO05D000729 2.3e-72 276.2 244 68.4
AT5G41380 Arabidopsis thaliana HOM05D000932 ORTHO05D000729 1.2e-68 263.8 244 65.2
Carub.0007s3410 Capsella rubella HOM05D000932 ORTHO05D000729 7.3e-66 254.6 255 63.1
THA.LOC104817876 Tarenaya hassleriana HOM05D000932 ORTHO05D000729 4.8e-49 198.7 266 53.0
THA.LOC104809375 Tarenaya hassleriana HOM05D000932 ORTHO05D000729 1.1e-48 197.6 258 51.6
Aa31LG2G990 Aethionema arabicum HOM05D000932 ORTHO05D000729 2.0e-39 166.8 251 51.4
CARHR047380 Cardamine hirsuta HOM05D000932 ORTHO05D000729 5.6e-34 148.7 253 47.4
Carub.0002s0103 Capsella rubella HOM05D000932 ORTHO05D000729 4.0e-32 142.5 256 44.9
Ciclev10021189m.g Citrus clementina HOM05D000932 ORTHO05D000729 6.9e-32 141.7 250 46.0
AT1G63820 Arabidopsis thaliana HOM05D000932 ORTHO05D000729 5.8e-31 138.7 253 45.8
AL2G11320 Arabidopsis lyrata HOM05D000932 ORTHO05D000729 1.0e-30 137.9 253 45.1
Manes.01G060500 Manihot esculenta HOM05D000932 ORTHO05D000729 2.5e-29 133.3 266 42.1
Potri.003G130500 Populus trichocarpa HOM05D000932 ORTHO05D000729 3.5e-28 129.4 273 42.1
Phvul.002G291600 Phaseolus vulgaris HOM05D000932 ORTHO05D000729 1.9e-26 123.6 255 39.6
QL12p032366 Quercus lobata HOM05D000932 ORTHO05D000729 1.9e-26 123.6 264 41.7
Sabra03G0092800 Salix brachista HOM05D000932 ORTHO05D000729 1.9e-26 123.6 216 42.6
Lalb_Chr05g0224621 Lupinus albus HOM05D000932 ORTHO05D000729 3.3e-26 122.9 200 45.0
Prupe.5G104100 Prunus persica HOM05D000932 ORTHO05D000729 3.3e-26 122.9 270 43.0
Hma1.2p1_0377F.1_g139450 Hydrangea macrophylla HOM05D000932 ORTHO05D000729 4.3e-26 122.5 242 43.0
Potri.001G101200 Populus trichocarpa HOM05D000932 ORTHO05D000729 4.3e-26 122.5 273 40.3
CiPaw.12G090900 Carya illinoinensis HOM05D000932 ORTHO05D000729 5.7e-26 122.1 263 43.3
VMungo0251G0594 Vigna mungo HOM05D000932 ORTHO05D000729 7.4e-26 121.7 256 41.0
Atru.chr9.2152 Acer truncatum HOM05D000932 ORTHO05D000729 9.7e-26 121.3 228 44.3
Glyma.05G209800 Glycine max HOM05D000932 ORTHO05D000729 9.7e-26 121.3 250 41.6
Lj4g0000406 Lotus japonicus HOM05D000932 ORTHO05D000729 2.2e-25 120.2 252 40.9
Sabra01G0076200 Salix brachista HOM05D000932 ORTHO05D000729 2.2e-25 120.2 269 40.1
TWI60G0720 Tripterygium wilfordii HOM05D000932 ORTHO05D000729 2.8e-25 119.8 279 39.8
A09p15300 Brassica napus HOM05D000932 ORTHO05D000729 3.7e-25 119.4 218 44.0
BraA09t37175Z Brassica rapa HOM05D000932 ORTHO05D000729 3.7e-25 119.4 218 44.0
Nitab4.5_0004114g0060 Nicotiana tabacum HOM05D000932 ORTHO05D000729 3.7e-25 119.4 248 40.7
Glyma.08G016500 Glycine max HOM05D000932 ORTHO05D000729 8.2e-25 118.2 249 40.2
Thecc.03G282900 Theobroma cacao HOM05D000932 ORTHO05D000729 8.2e-25 118.2 236 40.7
MD14G1108900 Malus domestica HOM05D000932 ORTHO05D000729 1.4e-24 117.5 206 44.7
Aa31LG9G570 Aethionema arabicum HOM05D000932 ORTHO05D000729 6.9e-24 115.2 169 47.9
Hma1.2p1_1123F.1_g259400 Hydrangea macrophylla HOM05D000932 ORTHO05D000729 6.9e-24 115.2 252 40.9
BcaC04g22505 Brassica carinata HOM05D000932 ORTHO05D000729 2.6e-23 113.2 255 39.6
C09p18570 Brassica napus HOM05D000932 ORTHO05D000729 4.5e-23 112.5 257 39.3
BolC9t54753H Brassica oleracea HOM05D000932 ORTHO05D000729 4.5e-23 112.5 257 39.3
Cpa.g.sc180.14 Carica papaya HOM05D000932 ORTHO05D000729 5.9e-23 112.1 225 43.6
Duzib205G0545 Durio zibethinus HOM05D000932 ORTHO05D000729 5.9e-23 112.1 189 42.9
Thhalv10023638m.g Eutrema salsugineum HOM05D000932 ORTHO05D000729 5.9e-23 112.1 234 42.7
Nitab4.5_0001522g0030 Nicotiana tabacum HOM05D000932 ORTHO05D000729 1.3e-22 110.9 245 40.8
Psat7g031600 Pisum sativum HOM05D000932 ORTHO05D000729 3.8e-22 109.4 172 45.9
TPR.G12941 Trifolium pratense HOM05D000932 ORTHO05D000729 3.8e-22 109.4 267 37.5
Cc08_g15020 Coffea canephora HOM05D000932 ORTHO05D000729 5.0e-22 109.0 266 37.6
Sp2g00890 Schrenkiella parvula HOM05D000932 ORTHO05D000729 1.1e-21 107.8 252 40.5
arahy.Tifrunner.gnm1.ann1.BU1BMX Arachis hypogaea HOM05D000932 ORTHO05D000729 1.4e-21 107.5 262 37.0
Oeu059560.1 Olea europaea HOM05D000932 ORTHO05D000729 1.4e-21 107.5 248 41.1
Hund11451 Selenicereus undatus HOM05D000932 ORTHO05D000729 1.9e-21 107.1 208 40.9
arahy.Tifrunner.gnm1.ann1.AGT1RS Arachis hypogaea HOM05D000932 ORTHO05D000729 2.5e-21 106.7 263 36.9
RcHm_v2.0_Chr7g0197051 Rosa chinensis HOM05D000932 ORTHO05D000729 2.5e-21 106.7 259 37.5
Phvul.002G158500 Phaseolus vulgaris HOM05D000932 ORTHO05D000729 3.2e-21 106.3 126 54.8
MD06G1088000 Malus domestica HOM05D000932 ORTHO05D000729 9.4e-21 104.8 259 38.6
VMungo1215G1926 Vigna mungo HOM05D000932 ORTHO05D000729 1.2e-20 104.4 122 55.7
Gorai.006G209000 Gossypium raimondii HOM05D000932 ORTHO05D000729 2.7e-20 103.2 241 39.0
Lsat_1_v5_gn_6_85380 Lactuca sativa HOM05D000932 ORTHO05D000729 2.7e-20 103.2 204 42.6
Gohir.D09G186300 Gossypium hirsutum HOM05D000932 ORTHO05D000729 3.6e-20 102.8 241 38.6
FvH4_1g29660 Fragaria vesca HOM05D000932 ORTHO05D000729 6.1e-20 102.1 256 35.9
CSS0007952 Camellia sinensis var. sinensis HOM05D000932 ORTHO05D000729 7.9e-20 101.7 259 40.5
Rhsim07G0088500 Rhododendron simsii HOM05D000932 ORTHO05D000729 7.9e-20 101.7 249 38.6
Migut.A00747 Erythranthe guttata HOM05D000932 ORTHO05D000729 1.4e-19 100.9 244 37.7
Gohir.A09G192000 Gossypium hirsutum HOM05D000932 ORTHO05D000729 1.4e-19 100.9 241 37.8
Glyma.01G221100 Glycine max HOM05D000932 ORTHO05D000729 1.8e-19 100.5 229 38.9
Lsat_1_v5_gn_6_4580 Lactuca sativa HOM05D000932 ORTHO05D000729 2.3e-19 100.1 205 41.0
BcaB07g31411 Brassica carinata HOM05D000932 ORTHO05D000729 5.1e-19 99.0 254 37.4
FAN19G0306 Fragaria x ananassa HOM05D000932 ORTHO05D000729 6.7e-19 98.6 256 35.5
Sopen08g029670 Solanum pennellii HOM05D000932 ORTHO05D000729 6.7e-19 98.6 204 40.7
GSVIVG01019393001 Vitis vinifera HOM05D000932 ORTHO05D000729 8.8e-19 98.2 190 45.3
FAN26G2342 Fragaria x ananassa HOM05D000932 ORTHO05D000729 1.5e-18 97.4 256 35.2
Glyma.11G022600 Glycine max HOM05D000932 ORTHO05D000729 1.5e-18 97.4 118 55.9
Oeu007741.1 Olea europaea HOM05D000932 ORTHO05D000729 1.5e-18 97.4 202 42.1
MSTRG.11970 Avicennia marina HOM05D000932 ORTHO05D000729 1.9e-18 97.1 238 36.1
FAN23G0457 Fragaria x ananassa HOM05D000932 ORTHO05D000729 1.9e-18 97.1 256 35.5
DCAR_008365 Daucus carota HOM05D000932 ORTHO05D000729 2.5e-18 96.7 248 37.9
Eucgr.E00639 Eucalyptus grandis HOM05D000932 ORTHO05D000729 3.3e-18 96.3 113 51.3
Solyc08g081350.2 Solanum lycopersicum HOM05D000932 ORTHO05D000729 3.3e-18 96.3 254 36.2
CAN.G532.9 Capsicum annuum HOM05D000932 ORTHO05D000729 4.3e-18 95.9 247 38.9
ECA240G4070 Erigeron canadensis HOM05D000932 ORTHO05D000729 4.3e-18 95.9 133 48.1
Cfa012201 Carpinus fangiana HOM05D000932 ORTHO05D000729 5.7e-18 95.5 265 38.1
Dinv38920 Davidia involucrata HOM05D000932 ORTHO05D000729 5.7e-18 95.5 243 37.4
LjContig00312_ERROPOS870357g0008521 Lotus japonicus HOM05D000932 ORTHO05D000729 7.4e-18 95.1 236 37.7
Actinidia33741 Actinidia chinensis HOM05D000932 ORTHO05D000729 2.8e-17 93.2 132 46.2
Duzib068G0955 Durio zibethinus HOM05D000932 ORTHO05D000729 3.7e-17 92.8 190 37.4
Manes.02G021800 Manihot esculenta HOM05D000932 ORTHO05D000729 6.3e-17 92.0 250 39.2
PGSC0003DMG400012193 Solanum tuberosum HOM05D000932 ORTHO05D000729 8.2e-17 91.7 255 36.1
Gohir.D08G202600 Gossypium hirsutum HOM05D000932 ORTHO05D000729 1.1e-16 91.3 183 38.8
Lj8A218T21 Lonicera japonica HOM05D000932 ORTHO05D000729 1.1e-16 91.3 244 37.3
HanXRQChr03g0085921 Helianthus annuus HOM05D000932 ORTHO05D000729 1.4e-16 90.9 185 41.1
Oeu061387.1 Olea europaea HOM05D000932 ORTHO05D000729 1.8e-16 90.5 248 33.9
TPR.G6694 Trifolium pratense HOM05D000604 ORTHO05D004512 2.4e-16 90.1 120 53.3
TAR636G0780 Trochodendron aralioides HOM05D000932 ORTHO05D000729 2.4e-16 90.1 194 40.2
HanXRQChr13g0394131 Helianthus annuus HOM05D000932 ORTHO05D000729 6.9e-16 88.6 245 36.7
TAR629G1819 Trochodendron aralioides HOM05D000932 ORTHO05D000729 6.9e-16 88.6 261 36.4
DCAR_000626 Daucus carota HOM05D000932 ORTHO05D000729 9.1e-16 88.2 235 37.0
Gohir.A08G184100 Gossypium hirsutum HOM05D000932 ORTHO05D000729 9.1e-16 88.2 197 37.1
PGR042G2581 Punica granatum HOM05D000932 ORTHO05D000729 9.1e-16 88.2 250 36.4
ClCG01G002510 Citrullus lanatus HOM05D000932 ORTHO05D000729 1.5e-15 87.4 261 37.2
Peaxi162Scf00074g02025 Petunia axillaris HOM05D000932 ORTHO05D000729 1.5e-15 87.4 230 37.0
Gorai.004G214000 Gossypium raimondii HOM05D000932 ORTHO05D000729 2.0e-15 87.0 197 37.1
EL10Ac5g12804 Beta vulgaris HOM05D000932 ORTHO05D000729 2.6e-15 86.7 285 33.3
Sc22g0005470 Simmondsia chinensis HOM05D000932 ORTHO05D000729 2.6e-15 86.7 223 35.4
CsaV3_5G002610 Cucumis sativus L. HOM05D000932 ORTHO05D000729 3.4e-15 86.3 112 52.7
Nn1g01593 Nelumbo nucifera HOM05D000932 ORTHO05D000729 4.5e-15 85.9 200 39.0
vmacro13964 Vaccinium macrocarpon HOM05D000932 ORTHO05D000729 7.7e-15 85.1 193 38.9
arahy.Tifrunner.gnm1.ann1.B2EAID Arachis hypogaea HOM05D000932 ORTHO05D000729 1.0e-14 84.7 113 52.2
CiPaw.11G132500 Carya illinoinensis HOM05D000932 ORTHO05D000729 1.0e-14 84.7 152 46.1
arahy.Tifrunner.gnm1.ann1.BXJN39 Arachis hypogaea HOM05D000932 ORTHO05D000729 2.2e-14 83.6 113 52.2
Medtr8g098725 Medicago truncatula HOM05D000932 ORTHO05D000729 2.2e-14 83.6 261 34.5
FAN28G0866 Fragaria x ananassa HOM05D000932 ORTHO05D000729 2.9e-14 83.2 291 32.3
BcaB07g31549 Brassica carinata HOM05D000932 ORTHO05D000729 3.8e-14 82.8 253 36.0
Ah.07g196440 Amaranthus hybridus HOM05D000932 ORTHO05D000729 8.5e-14 81.6 209 37.3
MELO3C005695.2 Cucumis melo HOM05D000932 ORTHO05D000729 8.5e-14 81.6 207 39.6
Nn6g33335 Nelumbo nucifera HOM05D000932 ORTHO05D000729 8.5e-14 81.6 268 34.7
ECA233G3587 Erigeron canadensis HOM05D000932 ORTHO05D000729 1.2e-12 77.8 230 34.8
Sed0014817 Sechium edule HOM05D000932 ORTHO05D000729 1.2e-12 77.8 125 48.0
Medtr5g010120 Medicago truncatula HOM05D000932 ORTHO05D000729 1.6e-12 77.4 232 36.6
FvH4_5g02850 Fragaria vesca HOM05D000932 ORTHO05D000729 7.9e-12 75.1 262 32.1
PGR031G0503 Punica granatum HOM05D000932 ORTHO05D000729 5.1e-11 72.4 131 42.7
FAN08G3463 Fragaria x ananassa HOM05D000932 ORTHO05D000729 6.7e-11 72.0 144 39.6
PSO063G6721 Papaver somniferum HOM05D000932 ORTHO05D000729 7.4e-10 68.6 67 59.7
PSO384G2834 Papaver somniferum HOM05D000932 ORTHO05D000729 7.4e-10 68.6 245 31.0
PSO832G0188 Papaver somniferum HOM05D000932 ORTHO05D000729 7.4e-10 68.6 67 59.7
Psat2g184400 Pisum sativum HOM05D000932 ORTHO05D000729 7.4e-10 68.6 107 43.0
Sc07g0009830 Simmondsia chinensis HOM05D000932 ORTHO05D000729 1.3e-09 67.8 118 41.5
vmacro14497 Vaccinium macrocarpon HOM05D000932 ORTHO05D000729 2.8e-09 66.6 200 33.5
PSO478G4985 Papaver somniferum HOM05D000932 ORTHO05D000729 3.7e-09 66.2 238 32.8
PSO339G4745 Papaver somniferum HOM05D000932 ORTHO05D000729 4.8e-09 65.9 249 30.1
PSO782G3796 Papaver somniferum HOM05D000932 ORTHO05D000729 8.2e-09 65.1 244 32.8
Dinv06294 Davidia involucrata HOM05D000932 ORTHO05D000729 3.1e-08 63.2 216 32.9
Aqoxy4G03107 Aquilegia oxysepala HOM05D000932 ORTHO05D000729 7.0e-08 62.0 225 31.6
MBI04_g00369_MAGBIO Magnolia biondii HOM05D000932 ORTHO05D000729 7.0e-08 62.0 251 32.7
CANSAT54G2797 Cannabis sativa HOM05D000932 ORTHO05D000729 1.2e-07 61.2 147 36.1
Gohir.A07G094600 Gossypium hirsutum HOM05D000932 ORTHO05D000729 1.5e-07 60.8 157 33.8
MBI14_g20929_MAGBIO Magnolia biondii HOM05D000932 ORTHO05D000729 2.0e-07 60.5 195 30.8
MBI14_g27051_MAGBIO Magnolia biondii HOM05D000932 ORTHO05D000729 2.0e-07 60.5 195 30.8
MD14G1109100 Malus domestica HOM05D000932 ORTHO05D000729 2.0e-07 60.5 146 38.4
Cfa011417 Carpinus fangiana HOM05D000932 ORTHO05D000729 4.5e-07 59.3 181 32.0
Gohir.D07G098900 Gossypium hirsutum HOM05D000932 ORTHO05D000729 4.5e-07 59.3 157 33.1
QL01p034599 Quercus lobata HOM05D000932 ORTHO05D000729 4.5e-07 59.3 187 33.2
Haze_23997 Corylus avellana HOM05D000932 ORTHO05D000729 5.9e-07 58.9 182 32.4
Dinv37618 Davidia involucrata HOM05D000932 ORTHO05D000729 5.9e-07 58.9 61 59.0
Actinidia00809 Actinidia chinensis HOM05D000932 ORTHO05D000729 7.7e-07 58.5 69 49.3
Sed0000359 Sechium edule HOM05D000932 ORTHO05D000729 1.0e-06 58.2 86 45.3
SEGI_39721 Sequoiadendron giganteum HOM05D000932 ORTHO05D000729 1.0e-06 58.2 69 52.2
Rhsim01G0223700 Rhododendron simsii HOM05D000932 ORTHO05D000729 1.3e-06 57.8 69 49.3
Actinidia03768 Actinidia chinensis HOM05D000932 ORTHO05D000729 1.7e-06 57.4 69 47.8
Gohir.A12G231000 Gossypium hirsutum HOM05D000932 ORTHO05D000729 1.7e-06 57.4 70 52.9
ATR0661G132 Amborella trichopoda HOM05D000932 ORTHO05D000729 2.2e-06 57.0 179 30.7
Gohir.D12G232100 Gossypium hirsutum HOM05D000932 ORTHO05D000729 2.2e-06 57.0 88 45.5
Gorai.008G248400 Gossypium raimondii HOM05D000932 ORTHO05D000729 2.2e-06 57.0 88 45.5
GSVIVG01025065001 Vitis vinifera HOM05D000932 ORTHO05D000729 2.2e-06 57.0 132 36.4
Gorai.001G106600 Gossypium raimondii HOM05D000932 ORTHO05D000729 2.9e-06 56.6 155 32.9
Lj3g0021931 Lotus japonicus HOM05D000932 ORTHO05D000729 2.9e-06 56.6 149 36.2
Lalb_Chr03g0026971 Lupinus albus HOM05D000932 ORTHO05D000729 2.9e-06 56.6 144 34.7
Pp3c3_34580 Physcomitrium patens HOM05D000932 ORTHO05D000729 2.9e-06 56.6 74 47.3
TAR623G0516 Trochodendron aralioides HOM05D000932 ORTHO05D000729 2.9e-06 56.6 191 30.9
HPP92_008532 Vanilla planifolia HOM05D000932 ORTHO05D000729 2.9e-06 56.6 88 44.3
COL.COLO4_34499 Corchorus olitorius HOM05D000932 ORTHO05D000729 3.8e-06 56.2 38 73.7
Duzib168G1389 Durio zibethinus HOM05D000932 ORTHO05D000729 3.8e-06 56.2 140 33.6
Manes.11G137200 Manihot esculenta HOM05D000932 ORTHO05D000729 3.8e-06 56.2 63 52.4
Nn2g10563 Nelumbo nucifera HOM05D000932 ORTHO05D000729 3.8e-06 56.2 82 43.9
Os01g0835700 Oryza sativa ssp. japonica HOM05D000932 ORTHO05D000729 3.8e-06 56.2 75 48.0
Pp3c12_13600 Physcomitrium patens HOM05D000932 ORTHO05D000729 3.8e-06 56.2 126 37.3
Zm00001eb148750 Zea mays HOM05D000932 ORTHO05D000729 3.8e-06 56.2 75 48.0
Hma1.2p1_0035F.1_g021790 Hydrangea macrophylla HOM05D000932 ORTHO05D000729 5.0e-06 55.8 138 36.2
Lalb_Chr25g0284851 Lupinus albus HOM05D000932 ORTHO05D000729 5.0e-06 55.8 39 74.4
COL.COLO4_18415 Corchorus olitorius HOM05D000932 ORTHO05D000729 6.5e-06 55.5 124 37.1
Thecc.09G331400 Theobroma cacao HOM05D000932 ORTHO05D000729 6.5e-06 55.5 191 30.4
Eucgr.J02104 Eucalyptus grandis HOM05D000932 ORTHO05D000729 8.5e-06 55.1 150 35.3
Pp3c8_7520 Physcomitrium patens HOM05D000932 ORTHO05D000729 8.5e-06 55.1 66 51.5
Potri.001G233600 Populus trichocarpa HOM05D000932 ORTHO05D000729 8.5e-06 55.1 145 35.9
QL04p077060 Quercus lobata HOM05D000932 ORTHO05D000729 8.5e-06 55.1 39 71.8


User provided reference genes

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