Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g07882 Brassica carinata HOM05D004803 ORTHO05D005653 2.8e-35 151.4 75 100.0
BcaC08g44541 Brassica carinata HOM05D004803 ORTHO05D005653 9.1e-34 146.4 75 96.0
Carub.0007s3380 Capsella rubella HOM05D004803 ORTHO05D005653 5.1e-29 130.6 75 81.3
AT5G41685 Arabidopsis thaliana HOM05D004803 ORTHO05D005653 1.3e-27 125.9 76 80.3
AL7G47670 Arabidopsis lyrata HOM05D004803 ORTHO05D005653 2.2e-27 125.2 75 78.7
CARHR272970 Cardamine hirsuta HOM05D004803 ORTHO05D005653 3.1e-26 121.3 75 78.7
Thhalv10028124m.g Eutrema salsugineum HOM05D004803 ORTHO05D005653 1.2e-25 119.4 75 78.7
BcaB06g27645 Brassica carinata HOM05D004803 ORTHO05D005653 1.4e-23 112.5 66 83.3
Aa31LG2G1260 Aethionema arabicum HOM05D004803 ORTHO05D005653 4.2e-23 110.9 73 72.6
Aa31LG9G390 Aethionema arabicum HOM05D004803 ORTHO05D005653 4.2e-23 110.9 71 74.6
BcaC02g08933 Brassica carinata HOM05D004803 ORTHO05D005653 1.2e-22 109.4 66 81.8
C04p48720 Brassica napus HOM05D004803 ORTHO05D005653 1.2e-22 109.4 66 81.8
C04p48770 Brassica napus HOM05D004803 ORTHO05D005653 1.2e-22 109.4 66 81.8
C04p48830 Brassica napus HOM05D004803 ORTHO05D005653 1.2e-22 109.4 66 81.8
BolC4t26463H Brassica oleracea HOM05D004803 ORTHO05D005653 1.2e-22 109.4 66 81.8
A04p14790 Brassica napus HOM05D004803 ORTHO05D005653 2.1e-22 108.6 66 80.3
A04p14850 Brassica napus HOM05D004803 ORTHO05D005653 2.7e-22 108.2 66 78.8
BraA04t17117Z Brassica rapa HOM05D004803 ORTHO05D005653 2.7e-22 108.2 66 78.8
A04p18870 Brassica napus HOM05D004803 ORTHO05D005653 4.7e-22 107.5 66 80.3
Manes.12G104200 Manihot esculenta HOM05D004803 ORTHO05D005653 3.0e-21 104.8 75 65.3
BraA04t17123Z Brassica rapa HOM05D004803 ORTHO05D005653 3.9e-21 104.4 66 75.8
BolC4t26468H Brassica oleracea HOM05D004803 ORTHO05D005653 6.7e-21 103.6 64 81.2
Gohir.A13G115000 Gossypium hirsutum HOM05D004803 ORTHO05D005653 6.7e-21 103.6 75 68.0
COL.COLO4_24021 Corchorus olitorius HOM05D004803 ORTHO05D005653 8.8e-21 103.2 76 68.4
BcaC04g22640 Brassica carinata HOM05D004803 ORTHO05D005653 1.5e-20 102.4 70 72.9
Duzib106G0817 Durio zibethinus HOM05D004803 ORTHO05D005653 2.0e-20 102.1 76 69.7
Gohir.D13G117900 Gossypium hirsutum HOM05D004803 ORTHO05D005653 2.0e-20 102.1 75 66.7
Gorai.013G132400 Gossypium raimondii HOM05D004803 ORTHO05D005653 2.0e-20 102.1 75 66.7
Sp7g00380 Schrenkiella parvula HOM05D004803 ORTHO05D005653 2.0e-20 102.1 75 68.0
Manes.13G122700 Manihot esculenta HOM05D004803 ORTHO05D005653 4.4e-20 100.9 75 62.7
BolC9t54609H Brassica oleracea HOM05D004803 ORTHO05D005653 9.7e-20 99.8 70 71.4
BcaB07g31446 Brassica carinata HOM05D004803 ORTHO05D005653 1.3e-19 99.4 70 70.0
C04p48860 Brassica napus HOM05D004803 ORTHO05D005653 1.3e-19 99.4 65 81.5
FvH4_4g06260 Fragaria vesca HOM05D004803 ORTHO05D005653 1.7e-19 99.0 75 65.3
FAN12G1038 Fragaria x ananassa HOM05D004803 ORTHO05D005653 1.7e-19 99.0 75 65.3
FAN22G0315 Fragaria x ananassa HOM05D004803 ORTHO05D005653 1.7e-19 99.0 77 67.5
CARHR046710 Cardamine hirsuta HOM05D004803 ORTHO05D005653 2.2e-19 98.6 69 68.1
Cfa020735 Carpinus fangiana HOM05D004803 ORTHO05D005653 3.7e-19 97.8 77 66.2
Thecc.07G084900 Theobroma cacao HOM05D004803 ORTHO05D005653 3.7e-19 97.8 76 65.8
CiPaw.15G155100 Carya illinoinensis HOM05D004803 ORTHO05D005653 4.8e-19 97.4 75 64.0
QL11p009265 Quercus lobata HOM05D004803 ORTHO05D005653 4.8e-19 97.4 74 63.5
Ciclev10023194m.g Citrus clementina HOM05D004803 ORTHO05D005653 6.3e-19 97.1 66 69.7
FAN17G0329 Fragaria x ananassa HOM05D004803 ORTHO05D005653 6.3e-19 97.1 75 64.0
TWI14G1226 Tripterygium wilfordii HOM05D004803 ORTHO05D005653 6.3e-19 97.1 76 65.8
BcaB07g31518 Brassica carinata HOM05D004803 ORTHO05D005653 8.2e-19 96.7 49 87.8
Cpa.g.sc116.72 Carica papaya HOM05D004803 ORTHO05D005653 8.2e-19 96.7 69 62.3
THA.LOC104817698 Tarenaya hassleriana HOM05D004803 ORTHO05D005653 8.2e-19 96.7 53 75.5
CANSAT80G0011 Cannabis sativa HOM05D004803 ORTHO05D005653 1.1e-18 96.3 64 67.2
Thhalv10023788m.g Eutrema salsugineum HOM05D004803 ORTHO05D005653 1.1e-18 96.3 71 70.4
Potri.018G146602 Populus trichocarpa HOM05D004803 ORTHO05D005653 1.1e-18 96.3 73 60.3
Atru.chr7.977 Acer truncatum HOM05D004803 ORTHO05D005653 1.4e-18 95.9 75 62.7
Duzib128G1472 Durio zibethinus HOM05D004803 ORTHO05D005653 1.4e-18 95.9 75 64.0
FAN07G1450 Fragaria x ananassa HOM05D004803 ORTHO05D005653 1.4e-18 95.9 75 62.7
Lsat_1_v5_gn_7_59621 Lactuca sativa HOM05D004803 ORTHO05D005653 1.4e-18 95.9 75 64.0
Lsat_1_v5_gn_7_59641 Lactuca sativa HOM05D004803 ORTHO05D005653 1.4e-18 95.9 75 64.0
MD13G1234800 Malus domestica HOM05D004803 ORTHO05D005653 1.4e-18 95.9 77 64.9
Potri.006G077500 Populus trichocarpa HOM05D004803 ORTHO05D005653 1.4e-18 95.9 73 61.6
RcHm_v2.0_Chr4g0397981 Rosa chinensis HOM05D004803 ORTHO05D005653 1.4e-18 95.9 77 64.9
TAR636G2654 Trochodendron aralioides HOM05D004803 ORTHO05D005653 1.4e-18 95.9 75 62.7
Ciclev10003057m.g Citrus clementina HOM05D004803 ORTHO05D005653 1.8e-18 95.5 75 65.3
Glyma.05G221400 Glycine max HOM05D004803 ORTHO05D005653 1.8e-18 95.5 75 62.7
Glyma.08G027900 Glycine max HOM05D004803 ORTHO05D005653 2.4e-18 95.1 75 61.3
C09p18010 Brassica napus HOM05D004803 ORTHO05D005653 3.1e-18 94.7 75 65.3
MBI13_g31565_MAGBIO Magnolia biondii HOM05D004803 ORTHO05D005653 3.1e-18 94.7 66 65.2
BcaC04g22540 Brassica carinata HOM05D004803 ORTHO05D005653 4.1e-18 94.4 75 64.0
BcaC04g22545 Brassica carinata HOM05D004803 ORTHO05D005653 4.1e-18 94.4 75 64.0
BcaC04g22642 Brassica carinata HOM05D004803 ORTHO05D005653 4.1e-18 94.4 75 64.0
BcaC04g22643 Brassica carinata HOM05D004803 ORTHO05D005653 4.1e-18 94.4 75 64.0
BolC9t54698H Brassica oleracea HOM05D004803 ORTHO05D005653 4.1e-18 94.4 75 64.0
Carub.0002s0057 Capsella rubella HOM05D004803 ORTHO05D005653 4.1e-18 94.4 78 62.8
ClCG06G014040 Citrullus lanatus HOM05D004803 ORTHO05D005653 4.1e-18 94.4 76 65.8
TWI39G0014 Tripterygium wilfordii HOM05D004803 ORTHO05D005653 5.3e-18 94.0 64 67.2
Ca_17414_v3 Cicer arietinum L. HOM05D004803 ORTHO05D005653 7.0e-18 93.6 75 61.3
Lalb_Chr16g0390871 Lupinus albus HOM05D004803 ORTHO05D005653 7.0e-18 93.6 75 61.3
vmacro20779 Vaccinium macrocarpon HOM05D004803 ORTHO05D005653 7.0e-18 93.6 73 65.8
Phvul.002G303100 Phaseolus vulgaris HOM05D004803 ORTHO05D005653 9.1e-18 93.2 75 61.3
Sed0007901 Sechium edule HOM05D004803 ORTHO05D005653 9.1e-18 93.2 76 64.5
Potri.018G145502 Populus trichocarpa HOM05D004803 ORTHO05D005653 1.2e-17 92.8 73 57.5
PSO063G0965 Papaver somniferum HOM05D004803 ORTHO05D005653 1.6e-17 92.4 69 65.2
Prupe.1G065700 Prunus persica HOM05D004803 ORTHO05D005653 1.6e-17 92.4 77 62.3
THA.LOC104823604 Tarenaya hassleriana HOM05D004803 ORTHO05D005653 1.6e-17 92.4 76 63.2
Psat7g021680 Pisum sativum HOM05D004803 ORTHO05D005653 2.0e-17 92.0 75 64.0
AL2G10780 Arabidopsis lyrata HOM05D004803 ORTHO05D005653 2.6e-17 91.7 50 82.0
HanXRQChr14g0437441 Helianthus annuus HOM05D004803 ORTHO05D005653 3.5e-17 91.3 75 60.0
Hma1.2p1_0284F.1_g113820 Hydrangea macrophylla HOM05D004803 ORTHO05D005653 3.5e-17 91.3 75 60.0
AT1G64220 Arabidopsis thaliana HOM05D004803 ORTHO05D005653 4.5e-17 90.9 78 60.3
MD16G1239600 Malus domestica HOM05D004803 ORTHO05D005653 4.5e-17 90.9 77 63.6
CSS0040541 Camellia sinensis var. sinensis HOM05D004803 ORTHO05D005653 5.9e-17 90.5 66 62.1
ECA240G2554 Erigeron canadensis HOM05D004803 ORTHO05D005653 1.0e-16 89.7 79 57.0
TPR.G25472 Trifolium pratense HOM05D004803 ORTHO05D005653 1.3e-16 89.4 75 60.0
A09p14890 Brassica napus HOM05D004803 ORTHO05D005653 1.7e-16 89.0 75 61.3
Zm00001eb358730 Zea mays HOM05D004803 ORTHO05D005653 1.7e-16 89.0 80 53.8
HPP92_006365 Vanilla planifolia HOM05D004803 ORTHO05D005653 2.2e-16 88.6 66 59.1
Medtr3g055500 Medicago truncatula HOM05D004803 ORTHO05D005653 3.8e-16 87.8 73 58.9
BraA09t37134Z Brassica rapa HOM05D004803 ORTHO05D005653 5.0e-16 87.4 70 64.3
Sc12g0011260 Simmondsia chinensis HOM05D004803 ORTHO05D005653 8.5e-16 86.7 74 56.8
Aa31LG6G6980 Aethionema arabicum HOM05D004803 ORTHO05D005653 1.1e-15 86.3 73 57.5
MBI11_g11974_MAGBIO Magnolia biondii HOM05D004803 ORTHO05D005653 1.1e-15 86.3 63 65.1
CARHR231140 Cardamine hirsuta HOM05D004803 ORTHO05D005653 1.5e-15 85.9 62 64.5
Lsat_1_v5_gn_7_59661 Lactuca sativa HOM05D004803 ORTHO05D005653 1.5e-15 85.9 75 58.7
Medtr3g462060 Medicago truncatula HOM05D004803 ORTHO05D005653 3.2e-15 84.7 75 57.3
Sopen07g005800 Solanum pennellii HOM05D004803 ORTHO05D005653 4.2e-15 84.3 78 53.8
Sopen07g005820 Solanum pennellii HOM05D004803 ORTHO05D005653 4.2e-15 84.3 78 53.8
MELO3C019213.2 Cucumis melo HOM05D004803 ORTHO05D005653 5.5e-15 84.0 76 60.5
CsaV3_2G035410 Cucumis sativus L. HOM05D004803 ORTHO05D005653 5.5e-15 84.0 75 60.0
Migut.B00847 Erythranthe guttata HOM05D004803 ORTHO05D005653 5.5e-15 84.0 80 57.5
CAN.G54.3 Capsicum annuum HOM05D004803 ORTHO05D005653 7.2e-15 83.6 78 53.8
MD15G1094200 Malus domestica HOM05D004803 ORTHO05D005653 9.4e-15 83.2 73 61.6
PGSC0003DMG400021021 Solanum tuberosum HOM05D004803 ORTHO05D005653 9.4e-15 83.2 78 51.3
PGR083G2338 Punica granatum HOM05D004803 ORTHO05D005653 1.2e-14 82.8 64 59.4
SalBow5G1850 Salvia bowleyana HOM05D004803 ORTHO05D005653 1.6e-14 82.4 80 57.5
Medtr2g067370 Medicago truncatula HOM05D004803 ORTHO05D005653 2.1e-14 82.0 64 57.8
Sp7g21690 Schrenkiella parvula HOM05D004803 ORTHO05D005653 2.1e-14 82.0 64 59.4
Os01g0626300 Oryza sativa ssp. japonica HOM05D004803 ORTHO05D005653 2.7e-14 81.6 81 51.9
Pp3c17_18760 Physcomitrium patens HOM05D004803 ORTHO05D005653 4.7e-14 80.9 47 76.6
Solyc07g015970.3 Solanum lycopersicum HOM05D004803 ORTHO05D005653 4.7e-14 80.9 72 56.9
AUR62025705 Chenopodium quinoa HOM05D004803 ORTHO05D005653 6.1e-14 80.5 62 61.3
Nitab4.5_0000413g0050 Nicotiana tabacum HOM05D004803 ORTHO05D005653 8.0e-14 80.1 78 52.6
Nitab4.5_0004188g0060 Nicotiana tabacum HOM05D004803 ORTHO05D005653 8.0e-14 80.1 78 53.8
Nitab4.5_0005014g0030 Nicotiana tabacum HOM05D004803 ORTHO05D005653 8.0e-14 80.1 78 52.6
Hma1.2p1_0418F.1_g149310 Hydrangea macrophylla HOM05D004803 ORTHO05D005653 1.0e-13 79.7 73 53.4
Nitab4.5_0005411g0060 Nicotiana tabacum HOM05D004803 ORTHO05D005653 1.0e-13 79.7 78 52.6
Aqoxy7G02691 Aquilegia oxysepala HOM05D004803 ORTHO05D005653 1.4e-13 79.3 65 55.4
Nn8g40644 Nelumbo nucifera HOM05D004803 ORTHO05D005653 1.4e-13 79.3 62 58.1
Pp3c14_20040 Physcomitrium patens HOM05D004803 ORTHO05D005653 1.4e-13 79.3 47 74.5
AUR62001322 Chenopodium quinoa HOM05D004803 ORTHO05D005653 1.8e-13 79.0 62 59.7
Ah.08g217890 Amaranthus hybridus HOM05D004803 ORTHO05D005653 2.3e-13 78.6 62 56.5
Peaxi162Scf00320g00053 Petunia axillaris HOM05D004803 ORTHO05D005653 2.3e-13 78.6 80 52.5
unitig_899.g15187 Utricularia gibba HOM05D004803 ORTHO05D005653 2.3e-13 78.6 81 53.1
Solyc05g047390.1 Solanum lycopersicum HOM05D004803 ORTHO05D005653 3.0e-13 78.2 79 50.6
Sopen05g027700 Solanum pennellii HOM05D004803 ORTHO05D005653 3.0e-13 78.2 79 50.6
PGSC0003DMG402013687 Solanum tuberosum HOM05D004803 ORTHO05D005653 3.0e-13 78.2 79 51.9
DCAR_019792 Daucus carota HOM05D004803 ORTHO05D005653 4.0e-13 77.8 80 53.8
Eucgr.H00014 Eucalyptus grandis HOM05D004803 ORTHO05D005653 1.2e-12 76.3 67 52.2
Nn8g41089 Nelumbo nucifera HOM05D004803 ORTHO05D005653 1.5e-12 75.9 52 61.5
SMO167G0035 Selaginella moellendorffii HOM05D004803 ORTHO05D005653 1.5e-12 75.9 62 58.1
Medtr3g061970 Medicago truncatula HOM05D004803 ORTHO05D005653 2.0e-12 75.5 63 55.6
Cc00_g00470 Coffea canephora HOM05D004803 ORTHO05D005653 3.4e-12 74.7 80 47.5
Nitab4.5_0010123g0030 Nicotiana tabacum HOM05D004803 ORTHO05D005653 4.4e-12 74.3 69 53.6
Os01g0732000 Oryza sativa ssp. japonica HOM05D004803 ORTHO05D005653 1.7e-11 72.4 64 50.0
Os05g0583400 Oryza sativa ssp. japonica HOM05D004803 ORTHO05D005653 4.8e-11 70.9 45 62.2
CBR_g29720 Chara braunii HOM05D004803 ORTHO05D005653 8.3e-11 70.1 59 57.6
MD12G1085900 Malus domestica HOM05D004803 ORTHO05D005653 1.4e-10 69.3 65 53.8
Mapoly0024s0138 Marchantia polymorpha HOM05D004803 ORTHO05D005653 3.1e-10 68.2 48 60.4
CBR_g29719 Chara braunii HOM05D004803 ORTHO05D005653 7.0e-10 67.0 51 58.8
Sed0005262 Sechium edule HOM05D004803 ORTHO05D005653 7.0e-10 67.0 59 59.3
MD06G1130200 Malus domestica HOM05D004803 ORTHO05D005653 1.2e-09 66.2 67 56.7
Lalb_Chr09g0331931 Lupinus albus HOM05D004803 ORTHO05D005653 2.7e-09 65.1 57 56.1
Atru.chr9.1510 Acer truncatum HOM05D004803 ORTHO05D005653 7.7e-09 63.5 56 57.1
Lj4g0006469 Lotus japonicus HOM05D004803 ORTHO05D005653 1.1e-07 59.7 48 58.3
Nn8g40643 Nelumbo nucifera HOM05D004803 ORTHO05D005653 7.2e-07 57.0 35 68.6
MBI16_g37211_MAGBIO Magnolia biondii HOM05D004803 ORTHO05D005653 8.0e-06 53.5 43 55.8


User provided reference genes

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