Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g07876 Brassica carinata HOM05D005006 ORTHO05D005903 4.0e-138 495.0 290 100.0
A07p20950 Brassica napus HOM05D005006 ORTHO05D005903 1.8e-117 426.4 290 84.8
C06p20240 Brassica napus HOM05D005006 ORTHO05D005903 3.9e-117 425.2 290 82.8
BolC6t37205H Brassica oleracea HOM05D005006 ORTHO05D005903 3.9e-117 425.2 290 82.8
BraA07t29781Z Brassica rapa HOM05D005006 ORTHO05D005903 1.1e-116 423.7 290 84.8
BcaC08g44558 Brassica carinata HOM05D005006 ORTHO05D005903 4.3e-116 421.8 290 84.8
Sp7g00270 Schrenkiella parvula HOM05D005006 ORTHO05D005903 2.0e-89 333.2 291 70.4
AL7G47430 Arabidopsis lyrata HOM05D005006 ORTHO05D005903 3.4e-89 332.4 299 72.9
CARHR212760 Cardamine hirsuta HOM05D005006 ORTHO05D005903 5.9e-89 331.6 295 73.6
AT5G41810 Arabidopsis thaliana HOM05D005006 ORTHO05D005903 5.2e-85 318.5 298 72.8
Carub.0007s3356 Capsella rubella HOM05D005006 ORTHO05D005903 1.2e-57 227.6 229 67.2
THA.LOC104809339 Tarenaya hassleriana HOM05D005006 ORTHO05D005903 6.4e-43 178.7 321 49.5
Aa31LG9G320 Aethionema arabicum HOM05D005006 ORTHO05D005903 1.1e-39 167.9 174 60.9
Thhalv10023644m.g Eutrema salsugineum HOM05D005006 ORTHO05D005903 3.1e-37 159.8 301 45.2
Sp2g00420 Schrenkiella parvula HOM05D005006 ORTHO05D005903 5.8e-36 155.6 299 42.8
BcaC04g22629 Brassica carinata HOM05D005006 ORTHO05D005903 2.2e-35 153.7 306 44.4
C09p17190 Brassica napus HOM05D005006 ORTHO05D005903 3.7e-35 152.9 309 44.7
A09p14260 Brassica napus HOM05D005006 ORTHO05D005903 2.4e-34 150.2 290 44.1
BolC9t54617H Brassica oleracea HOM05D005006 ORTHO05D005903 2.1e-33 147.1 313 44.1
BraA09t37075Z Brassica rapa HOM05D005006 ORTHO05D005903 6.0e-33 145.6 292 43.5
BcaB07g31512 Brassica carinata HOM05D005006 ORTHO05D005903 1.3e-32 144.4 297 47.5
FAN13G1208 Fragaria x ananassa HOM05D005006 ORTHO05D005903 8.6e-32 141.7 178 52.2
FAN18G0263 Fragaria x ananassa HOM05D005006 ORTHO05D005903 8.6e-32 141.7 178 52.2
AL2G10550 Arabidopsis lyrata HOM05D005006 ORTHO05D005903 2.5e-31 140.2 304 44.4
FvH4_5g04150 Fragaria vesca HOM05D005006 ORTHO05D005903 2.5e-31 140.2 178 52.2
FAN18G2980 Fragaria x ananassa HOM05D005006 ORTHO05D005903 4.3e-31 139.4 178 51.7
Carub.0002s0046 Capsella rubella HOM05D005006 ORTHO05D005903 9.5e-31 138.3 219 44.3
Eucgr.D01714 Eucalyptus grandis HOM05D005006 ORTHO05D005903 4.7e-30 136.0 179 55.3
CANSAT21G0143 Cannabis sativa HOM05D005006 ORTHO05D005903 8.1e-30 135.2 181 51.9
QL02p031286 Quercus lobata HOM05D005006 ORTHO05D005903 1.1e-29 134.8 181 51.9
MD14G1122100 Malus domestica HOM05D005006 ORTHO05D005903 1.4e-29 134.4 177 53.7
RcHm_v2.0_Chr7g0195351 Rosa chinensis HOM05D005006 ORTHO05D005903 1.8e-29 134.0 182 50.5
PGSC0003DMG400012296 Solanum tuberosum HOM05D005006 ORTHO05D005903 1.8e-29 134.0 173 49.7
Solyc08g082090.1 Solanum lycopersicum HOM05D005006 ORTHO05D005903 6.8e-29 132.1 171 50.9
Sopen08g030380 Solanum pennellii HOM05D005006 ORTHO05D005903 6.8e-29 132.1 171 50.9
Phvul.002G296900 Phaseolus vulgaris HOM05D005006 ORTHO05D005903 9.9e-28 128.3 183 49.2
Gohir.D08G132000 Gossypium hirsutum HOM05D005006 ORTHO05D005903 1.7e-27 127.5 182 50.0
Gorai.004G134900 Gossypium raimondii HOM05D005006 ORTHO05D005903 1.7e-27 127.5 182 50.0
TWI15G0537 Tripterygium wilfordii HOM05D005006 ORTHO05D005903 1.7e-27 127.5 183 47.5
Prupe.5G116000 Prunus persica HOM05D005006 ORTHO05D005903 2.2e-27 127.1 181 48.1
MD06G1103200 Malus domestica HOM05D005006 ORTHO05D005903 2.9e-27 126.7 177 54.8
Glyma.08G021800 Glycine max HOM05D005006 ORTHO05D005903 3.8e-27 126.3 181 49.2
Haze_08652 Corylus avellana HOM05D005006 ORTHO05D005903 6.4e-27 125.6 182 45.6
Gohir.A08G085100 Gossypium hirsutum HOM05D005006 ORTHO05D005903 8.4e-27 125.2 181 50.3
Glyma.11G018400 Glycine max HOM05D005006 ORTHO05D005903 1.1e-26 124.8 178 47.8
Haze_08651 Corylus avellana HOM05D005006 ORTHO05D005903 1.4e-26 124.4 182 45.1
PGR031G0908 Punica granatum HOM05D005006 ORTHO05D005903 1.4e-26 124.4 180 46.7
CiPaw.11G123200 Carya illinoinensis HOM05D005006 ORTHO05D005903 2.4e-26 123.6 181 49.2
Thecc.03G294000 Theobroma cacao HOM05D005006 ORTHO05D005903 3.2e-26 123.2 174 55.2
COL.COLO4_21708 Corchorus olitorius HOM05D005006 ORTHO05D005903 7.1e-26 122.1 184 53.8
Nitab4.5_0007099g0020 Nicotiana tabacum HOM05D005006 ORTHO05D005903 7.1e-26 122.1 164 53.0
Duzib084G0720 Durio zibethinus HOM05D005006 ORTHO05D005903 9.2e-26 121.7 174 50.6
AT1G64340 Arabidopsis thaliana HOM05D005006 ORTHO05D005903 1.2e-25 121.3 294 42.2
Manes.02G011900 Manihot esculenta HOM05D005006 ORTHO05D005903 1.2e-25 121.3 173 49.1
Psat0s4474g0040 Pisum sativum HOM05D005006 ORTHO05D005903 1.6e-25 120.9 162 48.1
Potri.001G093500 Populus trichocarpa HOM05D005006 ORTHO05D005903 2.1e-25 120.6 170 47.6
Dinv37546 Davidia involucrata HOM05D005006 ORTHO05D005903 2.7e-25 120.2 176 52.3
Ciclev10022492m.g Citrus clementina HOM05D005006 ORTHO05D005903 3.5e-25 119.8 180 55.6
Atru.chr9.2028 Acer truncatum HOM05D005006 ORTHO05D005903 1.0e-24 118.2 182 52.2
Atru.chr9.2036 Acer truncatum HOM05D005006 ORTHO05D005903 1.0e-24 118.2 182 52.2
Cfa012825 Carpinus fangiana HOM05D005006 ORTHO05D005903 1.0e-24 118.2 182 47.3
Duzib068G0822 Durio zibethinus HOM05D005006 ORTHO05D005903 1.0e-24 118.2 174 48.3
VMungo0251G1458 Vigna mungo HOM05D005006 ORTHO05D005903 1.0e-24 118.2 187 46.0
Glyma.05G215700 Glycine max HOM05D005006 ORTHO05D005903 1.3e-24 117.9 179 46.4
TWI81G0332 Tripterygium wilfordii HOM05D005006 ORTHO05D005903 1.3e-24 117.9 180 46.1
FAN04G1712 Fragaria x ananassa HOM05D005006 ORTHO05D005903 2.3e-24 117.1 223 41.3
FAN04G3134 Fragaria x ananassa HOM05D005006 ORTHO05D005903 2.3e-24 117.1 223 41.3
MELO3C005742.2 Cucumis melo HOM05D005006 ORTHO05D005903 5.1e-24 115.9 180 51.7
Cc08_g15850 Coffea canephora HOM05D005006 ORTHO05D005903 6.6e-24 115.5 174 47.7
Medtr5g009490 Medicago truncatula HOM05D005006 ORTHO05D005903 6.6e-24 115.5 182 45.6
CsaV3_5G002120 Cucumis sativus L. HOM05D005006 ORTHO05D005903 8.6e-24 115.2 180 50.6
Sc22g0005120 Simmondsia chinensis HOM05D005006 ORTHO05D005903 8.6e-24 115.2 169 47.3
ClCG01G001990 Citrullus lanatus HOM05D005006 ORTHO05D005903 4.3e-23 112.8 174 46.6
Glyma.01G224600 Glycine max HOM05D005006 ORTHO05D005903 4.3e-23 112.8 178 46.6
Aqoxy5G04131 Aquilegia oxysepala HOM05D005006 ORTHO05D005903 1.2e-22 111.3 181 45.9
Hma1.2p1_0359F.1_g135340 Hydrangea macrophylla HOM05D005006 ORTHO05D005903 1.2e-22 111.3 185 49.2
Manes.01G045300 Manihot esculenta HOM05D005006 ORTHO05D005903 2.1e-22 110.5 173 47.4
TPR.G6668 Trifolium pratense HOM05D005006 ORTHO05D005903 6.2e-22 109.0 182 45.1
LjContig00312_ERROPOS870357g0014674 Lotus japonicus HOM05D005006 ORTHO05D005903 1.4e-21 107.8 185 46.5
TAR629G3139 Trochodendron aralioides HOM05D005006 ORTHO05D005903 2.4e-21 107.1 181 44.8
AUR62010816 Chenopodium quinoa HOM05D005006 ORTHO05D005903 4.0e-21 106.3 184 41.3
Medtr8g099340 Medicago truncatula HOM05D005006 ORTHO05D005903 5.2e-21 105.9 184 42.4
Atru.chr2.764 Acer truncatum HOM05D005006 ORTHO05D005903 6.9e-21 105.5 180 50.0
Lj4g0012980 Lotus japonicus HOM05D005006 ORTHO05D005903 8.9e-21 105.1 179 46.9
Oeu061095.1 Olea europaea HOM05D005006 ORTHO05D005903 8.9e-21 105.1 171 43.9
MSTRG.13880 Avicennia marina HOM05D005006 ORTHO05D005903 2.0e-20 104.0 158 44.9
ClCG07G014930 Citrullus lanatus HOM05D005006 ORTHO05D005903 2.6e-20 103.6 178 43.8
ClCG10G009270 Citrullus lanatus HOM05D005006 ORTHO05D005903 2.6e-20 103.6 178 43.8
Sed0010968 Sechium edule HOM05D005006 ORTHO05D005903 2.6e-20 103.6 179 44.7
HanXRQChr03g0085171 Helianthus annuus HOM05D005006 ORTHO05D005903 9.9e-20 101.7 181 44.8
Actinidia01391 Actinidia chinensis HOM05D005006 ORTHO05D005903 1.3e-19 101.3 179 39.7
Ca_17490_v3 Cicer arietinum L. HOM05D005006 ORTHO05D005903 1.3e-19 101.3 185 43.2
Rhsim07G0083400 Rhododendron simsii HOM05D005006 ORTHO05D005903 1.3e-19 101.3 175 44.6
Cpa.g.sc775.1 Carica papaya HOM05D005006 ORTHO05D005903 1.7e-19 100.9 170 42.4
MELO3C016304.2 Cucumis melo HOM05D005006 ORTHO05D005903 1.7e-19 100.9 180 40.6
Psat7g027080 Pisum sativum HOM05D005006 ORTHO05D005903 2.9e-19 100.1 179 43.0
ECA240G3705 Erigeron canadensis HOM05D005006 ORTHO05D005903 3.8e-19 99.8 178 50.0
Peaxi162Scf00074g01119 Petunia axillaris HOM05D005006 ORTHO05D005903 3.8e-19 99.8 150 47.3
ECA233G6185 Erigeron canadensis HOM05D005006 ORTHO05D005903 6.4e-19 99.0 191 45.0
CSS0014692 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 1.1e-18 98.2 185 38.9
Lalb_Chr05g0224201 Lupinus albus HOM05D005006 ORTHO05D005903 1.1e-18 98.2 183 44.3
Sabra01G0069400 Salix brachista HOM05D000089 ORTHO05D003403 1.4e-18 97.8 158 47.5
DCAR_027715 Daucus carota HOM05D005006 ORTHO05D005903 1.9e-18 97.4 182 44.0
VMungo1215G3249 Vigna mungo HOM05D005266 ORTHO05D006416 4.2e-18 96.3 164 43.9
Lsat_1_v5_gn_6_85661 Lactuca sativa HOM05D005006 ORTHO05D005903 7.1e-18 95.5 185 40.5
Lsat_1_v5_gn_6_11781 Lactuca sativa HOM05D005006 ORTHO05D005903 1.2e-17 94.7 175 39.4
SGA_v2.0_scaffold111G31421 Striga asiatica HOM05D005006 ORTHO05D005903 1.2e-17 94.7 159 42.8
Nn1g01823 Nelumbo nucifera HOM05D005006 ORTHO05D005903 1.6e-17 94.4 175 41.7
CSS0022093 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 2.7e-17 93.6 187 42.2
HanXRQChr07g0191041 Helianthus annuus HOM05D005006 ORTHO05D005903 7.8e-17 92.0 184 38.6
Rhsim02G0241500 Rhododendron simsii HOM05D005006 ORTHO05D005903 3.9e-16 89.7 184 41.8
CsaV3_4G006460 Cucumis sativus L. HOM05D005006 ORTHO05D005903 5.1e-16 89.4 183 37.7
Sed0017945 Sechium edule HOM05D005006 ORTHO05D005903 5.1e-16 89.4 172 40.7
MBI07_g24340_MAGBIO Magnolia biondii HOM05D005006 ORTHO05D005903 7.3e-15 85.5 176 38.1
Sed0013874 Sechium edule HOM05D005006 ORTHO05D005903 5.3e-13 79.3 90 55.6
Sc01g0010170 Simmondsia chinensis HOM05D005006 ORTHO05D005903 2.2e-11 73.9 174 36.8
Manes.02G012001 Manihot esculenta HOM05D005006 ORTHO05D005903 2.9e-11 73.6 170 37.1
Peaxi162Scf00117g00128 Petunia axillaris HOM05D005006 ORTHO05D005903 2.9e-11 73.6 165 37.0
ClCG11G005390 Citrullus lanatus HOM05D000189 ORTHO05D006628 2.4e-10 70.5 150 40.0
Phvul.002G163200 Phaseolus vulgaris HOM05D005006 ORTHO05D005903 3.2e-10 70.1 114 41.2
TPR.G3451 Trifolium pratense HOM05D006501 ORTHO05D008241 5.4e-10 69.3 87 48.3
Dinv38852 Davidia involucrata HOM05D005006 ORTHO05D005903 2.1e-09 67.4 103 52.4
PGR042G1559 Punica granatum HOM05D005006 ORTHO05D005903 3.5e-09 66.6 170 32.9
MBI06_g32753_MAGBIO Magnolia biondii HOM05D005006 ORTHO05D005903 4.6e-09 66.2 171 37.4
ATR0589G111 Amborella trichopoda HOM05D005006 ORTHO05D005903 3.9e-08 63.2 102 41.2
ClCG01G011510 Citrullus lanatus HOM05D005006 ORTHO05D005903 1.5e-07 61.2 103 42.7
ClCG05G010200 Citrullus lanatus HOM05D005006 ORTHO05D005903 1.5e-07 61.2 103 42.7
ClCG07G009600 Citrullus lanatus HOM05D005006 ORTHO05D005903 1.5e-07 61.2 103 42.7
CSS0044305 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 2.5e-07 60.5 47 68.1
Gohir.D12G236200 Gossypium hirsutum HOM05D005006 ORTHO05D005903 2.5e-07 60.5 107 43.9
Gorai.008G253000 Gossypium raimondii HOM05D005006 ORTHO05D005903 2.5e-07 60.5 107 43.9
Gohir.A11G024100 Gossypium hirsutum HOM05D005006 ORTHO05D005903 4.3e-07 59.7 88 43.2
Gohir.A12G235100 Gossypium hirsutum HOM05D005006 ORTHO05D005903 7.4e-07 58.9 107 43.9
PSO724G0350 Papaver somniferum HOM05D005006 ORTHO05D005903 9.6e-07 58.5 90 45.6
PSO724G0798 Papaver somniferum HOM05D005006 ORTHO05D005903 9.6e-07 58.5 177 32.2
PSO729G0067 Papaver somniferum HOM05D005006 ORTHO05D005903 1.3e-06 58.2 91 50.5
TAR636G0983 Trochodendron aralioides HOM05D000337 ORTHO05D000297 1.6e-06 57.8 58 55.2
PSO724G1125 Papaver somniferum HOM05D005006 ORTHO05D005903 2.8e-06 57.0 177 31.6
Gohir.D03G082400 Gossypium hirsutum HOM05D005006 ORTHO05D005903 4.8e-06 56.2 142 38.0
Gorai.003G081300 Gossypium raimondii HOM05D005006 ORTHO05D005903 4.8e-06 56.2 142 38.0
Nn3g19068 Nelumbo nucifera HOM05D005006 ORTHO05D005903 4.8e-06 56.2 96 45.8
SGA_v2.0_scaffold173G39083 Striga asiatica HOM05D005006 ORTHO05D005903 4.8e-06 56.2 48 58.3
Gohir.A02G102000 Gossypium hirsutum HOM05D005006 ORTHO05D005903 6.2e-06 55.8 142 38.0


User provided reference genes

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