Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g07872 Brassica carinata HOM05D004439 ORTHO05D005670 1.0e-273 946.0 458 100.0
C06p20300 Brassica napus HOM05D004439 ORTHO05D005670 1.2e-253 879.4 459 94.1
BcaC02g08908 Brassica carinata HOM05D004439 ORTHO05D005670 5.9e-253 877.1 458 93.4
A04p15000 Brassica napus HOM05D004439 ORTHO05D005670 2.9e-252 874.8 460 93.0
C04p49290 Brassica napus HOM05D004439 ORTHO05D005670 1.9e-251 872.1 460 93.0
BolC4t26514H Brassica oleracea HOM05D004439 ORTHO05D005670 1.9e-251 872.1 460 93.0
BraA04t17145Z Brassica rapa HOM05D004439 ORTHO05D005670 2.1e-250 868.6 460 92.4
Sp7g00230 Schrenkiella parvula HOM05D004439 ORTHO05D005670 4.6e-245 850.9 462 90.7
Thhalv10027750m.g Eutrema salsugineum HOM05D004439 ORTHO05D005670 2.0e-240 835.5 459 90.2
A07p20990 Brassica napus HOM05D004439 ORTHO05D005670 2.3e-236 822.0 487 85.2
BcaB06g27677 Brassica carinata HOM05D004439 ORTHO05D005670 9.5e-235 816.6 470 86.0
CARHR212680 Cardamine hirsuta HOM05D004439 ORTHO05D005670 1.4e-233 812.8 459 86.7
AT5G41880 Arabidopsis thaliana HOM05D004439 ORTHO05D005670 4.0e-233 811.2 458 87.1
AL7G47340 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 5.2e-233 810.8 458 87.1
Carub.0007s3348 Capsella rubella HOM05D004439 ORTHO05D005670 4.1e-230 801.2 458 86.0
BcaC08g44563 Brassica carinata HOM05D004439 ORTHO05D005670 1.4e-222 776.2 403 94.3
BcaNung06856 Brassica carinata HOM05D004439 ORTHO05D005670 3.1e-217 758.4 478 82.8
THA.LOC104809335 Tarenaya hassleriana HOM05D004439 ORTHO05D005670 1.5e-211 739.6 475 76.8
Aa31LG9G280 Aethionema arabicum HOM05D004439 ORTHO05D005670 7.4e-203 710.7 424 82.1
Duzib205G1996 Durio zibethinus HOM05D004439 ORTHO05D005670 3.0e-188 662.1 458 68.3
Thecc.03G296500 Theobroma cacao HOM05D004439 ORTHO05D005670 3.9e-188 661.8 458 68.8
COL.COLO4_10686 Corchorus olitorius HOM05D004439 ORTHO05D005670 3.3e-187 658.7 470 67.2
Gohir.D12G237200 Gossypium hirsutum HOM05D004439 ORTHO05D005670 2.8e-186 655.6 458 67.0
CANSAT21G0267 Cannabis sativa HOM05D004439 ORTHO05D005670 6.3e-186 654.4 458 67.9
Cfa023584 Carpinus fangiana HOM05D004439 ORTHO05D005670 6.3e-186 654.4 461 68.5
Gorai.008G253800 Gossypium raimondii HOM05D004439 ORTHO05D005670 4.1e-185 651.7 458 66.6
Potri.003G104700 Populus trichocarpa HOM05D004439 ORTHO05D005670 9.0e-185 650.6 458 68.1
Duzib084G1213 Durio zibethinus HOM05D004439 ORTHO05D005670 1.2e-184 650.2 465 67.1
Prupe.5G117700 Prunus persica HOM05D004439 ORTHO05D005670 2.0e-184 649.4 460 67.2
EL10Ac5g12905 Beta vulgaris HOM05D004439 ORTHO05D005670 7.6e-184 647.5 461 67.0
Dinv38840 Davidia involucrata HOM05D004439 ORTHO05D005670 7.6e-184 647.5 460 66.3
Ciclev10020115m.g Citrus clementina HOM05D004439 ORTHO05D005670 2.9e-183 645.6 458 67.2
Manes.11G128600 Manihot esculenta HOM05D004439 ORTHO05D005670 2.9e-183 645.6 448 68.8
QL02p030851 Quercus lobata HOM05D004439 ORTHO05D005670 2.9e-183 645.6 462 67.1
TAR629G1063 Trochodendron aralioides HOM05D004439 ORTHO05D005670 6.5e-183 644.4 459 66.4
CiPaw.11G122200 Carya illinoinensis HOM05D004439 ORTHO05D005670 1.9e-182 642.9 463 66.3
CSS0017274 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 5.5e-182 641.3 460 65.4
CSS0021285 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 5.5e-182 641.3 460 65.4
TWI81G0104 Tripterygium wilfordii HOM05D004439 ORTHO05D005670 6.1e-181 637.9 459 66.9
MBI07_g27257_MAGBIO Magnolia biondii HOM05D004439 ORTHO05D005670 7.9e-181 637.5 460 65.7
Atru.chr9.2010 Acer truncatum HOM05D004439 ORTHO05D005670 1.0e-180 637.1 458 66.8
Sopen08g030490 Solanum pennellii HOM05D004439 ORTHO05D005670 2.5e-179 632.5 462 64.3
GSVIVG01019518001 Vitis vinifera HOM05D004439 ORTHO05D005670 7.4e-179 630.9 429 68.5
Nn2g14269 Nelumbo nucifera HOM05D004439 ORTHO05D005670 1.3e-178 630.2 454 65.2
Peaxi162Scf00074g01028 Petunia axillaris HOM05D004439 ORTHO05D005670 2.8e-178 629.0 458 64.4
vmacro13901 Vaccinium macrocarpon HOM05D004439 ORTHO05D005670 2.8e-178 629.0 463 64.8
Solyc08g082200.3 Solanum lycopersicum HOM05D004439 ORTHO05D005670 4.8e-178 628.2 462 63.9
Sc01g0010250 Simmondsia chinensis HOM05D004439 ORTHO05D005670 1.8e-177 626.3 462 63.6
Eucgr.E00854 Eucalyptus grandis HOM05D004439 ORTHO05D005670 3.1e-177 625.5 464 63.6
CAN.G532.113 Capsicum annuum HOM05D004439 ORTHO05D005670 4.1e-177 625.2 461 63.8
Lj1g0018659 Lotus japonicus HOM05D004439 ORTHO05D005670 4.1e-177 625.2 441 67.1
MD06G1105400 Malus domestica HOM05D004439 ORTHO05D005670 4.1e-177 625.2 447 66.4
MSTRG.1809 Avicennia marina HOM05D004439 ORTHO05D005670 5.3e-177 624.8 460 64.1
Migut.A00663 Erythranthe guttata HOM05D004439 ORTHO05D005670 5.3e-177 624.8 460 65.2
Lalb_Chr16g0376971 Lupinus albus HOM05D004439 ORTHO05D005670 1.2e-176 623.6 449 65.5
Hund11394 Selenicereus undatus HOM05D004439 ORTHO05D005670 4.5e-176 621.7 457 65.6
CsaV3_5G039570 Cucumis sativus L. HOM05D004439 ORTHO05D005670 3.8e-175 618.6 452 64.8
Glyma.02G286600 Glycine max HOM05D004439 ORTHO05D005670 1.4e-174 616.7 436 66.5
Phvul.009G207100 Phaseolus vulgaris HOM05D004439 ORTHO05D005670 1.4e-174 616.7 435 66.2
Psat5g147560 Pisum sativum HOM05D004439 ORTHO05D005670 3.2e-174 615.5 436 67.0
VMungo0647G0731 Vigna mungo HOM05D004439 ORTHO05D005670 4.2e-174 615.1 438 66.2
Ca_15083_v3 Cicer arietinum L. HOM05D004439 ORTHO05D005670 1.6e-173 613.2 435 66.9
Sed0005226 Sechium edule HOM05D004439 ORTHO05D005670 2.7e-173 612.5 458 64.4
arahy.Tifrunner.gnm1.ann1.URL0E3 Arachis hypogaea HOM05D004439 ORTHO05D005670 3.0e-172 609.0 461 63.8
arahy.Tifrunner.gnm1.ann1.X9M6Z3 Arachis hypogaea HOM05D004439 ORTHO05D005670 3.9e-172 608.6 461 64.0
arahy.Tifrunner.gnm1.ann1.FA9VAL Arachis hypogaea HOM05D004439 ORTHO05D005670 1.1e-171 607.1 461 63.8
Medtr3g062490 Medicago truncatula HOM05D004439 ORTHO05D005670 1.1e-171 607.1 435 66.2
Cc08_g15970 Coffea canephora HOM05D004439 ORTHO05D005670 3.3e-171 605.5 461 62.7
SalBow1G1193 Salvia bowleyana HOM05D004439 ORTHO05D005670 1.3e-170 603.6 458 62.7
Nitab4.5_0001231g0030 Nicotiana tabacum HOM05D004439 ORTHO05D005670 3.7e-170 602.1 463 63.3
RcHm_v2.0_Chr7g0195041 Rosa chinensis HOM05D004439 ORTHO05D005670 4.8e-170 601.7 443 65.2
FvH4_5g04460 Fragaria vesca HOM05D004439 ORTHO05D005670 1.4e-169 600.1 440 66.1
Ca_15072_v3 Cicer arietinum L. HOM05D004439 ORTHO05D005670 7.7e-168 594.3 461 62.3
AUR62019828 Chenopodium quinoa HOM05D004439 ORTHO05D005670 1.0e-167 594.0 467 62.7
Aqoxy5G04196 Aquilegia oxysepala HOM05D004439 ORTHO05D005670 1.3e-167 593.6 459 62.1
DCAR_006321 Daucus carota HOM05D004439 ORTHO05D005670 2.2e-167 592.8 457 64.1
FAN13G1146 Fragaria x ananassa HOM05D004439 ORTHO05D005670 2.9e-167 592.4 448 64.7
vmacro05785 Vaccinium macrocarpon HOM05D004439 ORTHO05D005670 6.5e-167 591.3 450 63.1
ATR0320G020 Amborella trichopoda HOM05D004439 ORTHO05D005670 8.5e-167 590.9 458 61.8
FAN18G4375 Fragaria x ananassa HOM05D004439 ORTHO05D005670 8.5e-167 590.9 468 62.6
HanXRQChr06g0184201 Helianthus annuus HOM05D004439 ORTHO05D005670 8.5e-167 590.9 458 62.4
arahy.Tifrunner.gnm1.ann1.B833UN Arachis hypogaea HOM05D004439 ORTHO05D005670 1.1e-166 590.5 476 61.1
Cpa.g.sc79.44 Carica papaya HOM05D004439 ORTHO05D005670 2.5e-166 589.3 442 66.3
AUR62010830 Chenopodium quinoa HOM05D004439 ORTHO05D005670 2.5e-166 589.3 461 62.3
FAN18G2355 Fragaria x ananassa HOM05D004439 ORTHO05D005670 2.5e-166 589.3 469 62.7
Rhsim07G0082800 Rhododendron simsii HOM05D004439 ORTHO05D005670 4.2e-166 588.6 441 63.3
HanXRQChr05g0138501 Helianthus annuus HOM05D004439 ORTHO05D005670 5.5e-166 588.2 458 62.2
Lsat_1_v5_gn_6_12240 Lactuca sativa HOM05D004439 ORTHO05D005670 2.7e-165 585.9 437 64.1
FAN04G2433 Fragaria x ananassa HOM05D004439 ORTHO05D005670 1.0e-164 583.9 468 61.5
FAN08G0613 Fragaria x ananassa HOM05D004439 ORTHO05D005670 1.8e-164 583.2 469 61.8
unitig_92.g28124 Utricularia gibba HOM05D004439 ORTHO05D005670 3.9e-164 582.0 432 63.4
ECA233G4302 Erigeron canadensis HOM05D004439 ORTHO05D005670 4.4e-163 578.6 455 63.1
Lj8C209T4 Lonicera japonica HOM05D004439 ORTHO05D005670 1.3e-159 567.0 395 66.8
Sabra03G0071700 Salix brachista HOM05D004439 ORTHO05D005670 5.5e-158 561.6 489 58.7
Aqoxy1G01152 Aquilegia oxysepala HOM05D004439 ORTHO05D005670 9.4e-158 560.8 409 65.5
SGA_v2.0_scaffold305G47954 Striga asiatica HOM05D004439 ORTHO05D005670 2.7e-157 559.3 498 57.2
Actinidia27332 Actinidia chinensis HOM05D004439 ORTHO05D005670 3.6e-157 558.9 458 60.9
Ah.12g052480 Amaranthus hybridus HOM05D004439 ORTHO05D005670 4.7e-157 558.5 471 59.2
PSO384G1647 Papaver somniferum HOM05D004439 ORTHO05D005670 4.0e-156 555.4 461 59.7
Mapoly0061s0010 Marchantia polymorpha HOM05D004439 ORTHO05D005670 5.2e-156 555.1 452 58.2
PSO339G0633 Papaver somniferum HOM05D004439 ORTHO05D005670 4.4e-155 552.0 462 60.4
CDE02G4298 Ceratophyllum demersum HOM05D004439 ORTHO05D005670 8.2e-154 547.7 450 59.8
HPP92_001766 Vanilla planifolia HOM05D004439 ORTHO05D005670 2.4e-153 546.2 438 59.6
HPP92_001588 Vanilla planifolia HOM05D004439 ORTHO05D005670 5.9e-152 541.6 404 62.6
Gohir.A12G236000 Gossypium hirsutum HOM05D004439 ORTHO05D005670 5.5e-150 535.0 367 67.6
Oeu063530.1 Olea europaea HOM05D004439 ORTHO05D005670 1.4e-148 530.4 396 63.9
Pp3c9_1070 Physcomitrium patens HOM05D004439 ORTHO05D005670 3.1e-145 519.2 433 56.4
Lj8A194T41 Lonicera japonica HOM05D004439 ORTHO05D005670 2.7e-144 516.2 385 63.9
CBR_g51004 Chara braunii HOM05D004439 ORTHO05D005670 6.5e-143 511.5 426 54.5
DCAR_029884 Daucus carota HOM05D004439 ORTHO05D005670 2.5e-142 509.6 383 65.8
AagrBONN_evm.TU.Sc2ySwM_117.2781 Anthoceros agrestis HOM05D004439 ORTHO05D005670 4.7e-141 505.4 439 56.0
Nitab4.5_0008661g0010 Nicotiana tabacum HOM05D004439 ORTHO05D005670 5.2e-140 501.9 442 57.0
CBR_g30932 Chara braunii HOM05D004439 ORTHO05D005670 4.4e-139 498.8 429 53.6
ClCG08G001530 Citrullus lanatus HOM05D004439 ORTHO05D005670 1.1e-137 494.2 535 50.1
Rhsim09G0008900 Rhododendron simsii HOM05D004439 ORTHO05D005670 2.4e-137 493.0 478 54.6
Haze_08623 Corylus avellana HOM05D004439 ORTHO05D005670 8.3e-130 468.0 340 66.5
arahy.Tifrunner.gnm1.ann1.4X43I0 Arachis hypogaea HOM05D004439 ORTHO05D005670 1.5e-123 447.2 352 62.2
TPR.G13893 Trifolium pratense HOM05D004439 ORTHO05D005670 1.2e-120 437.6 435 52.2
SMO361G0219 Selaginella moellendorffii HOM05D004439 ORTHO05D005670 3.6e-117 426.0 361 57.6
SMO361G0316 Selaginella moellendorffii HOM05D004439 ORTHO05D005670 3.6e-117 426.0 361 57.1
Glyma.14G028200 Glycine max HOM05D004439 ORTHO05D005670 6.2e-109 398.7 293 66.2
SHI03128 Sapria himalayana HOM05D004439 ORTHO05D005670 1.4e-108 397.5 459 47.3
Zm00001eb346380 Zea mays HOM05D004439 ORTHO05D005670 2.2e-106 390.2 293 63.5
CSS0041217 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 4.7e-101 372.5 465 47.3
Cre07.g312350 Chlamydomonas reinhardtii HOM05D004439 ORTHO05D005670 6.2e-101 372.1 373 46.9
arahy.Tifrunner.gnm1.ann1.JNH9P6 Arachis hypogaea HOM05D004439 ORTHO05D005670 1.3e-98 364.4 415 49.4
MD14G1127500 Malus domestica HOM05D004439 ORTHO05D005670 3.0e-95 353.2 278 61.2
Lj2A169G40 Lonicera japonica HOM05D004439 ORTHO05D005670 6.2e-93 345.5 343 53.1
PRCOL_00003494 Prasinoderma coloniale HOM05D004439 ORTHO05D005670 2.6e-91 340.1 440 43.0
Cfa025390 Carpinus fangiana HOM05D004439 ORTHO05D005670 1.4e-84 317.8 382 41.6
RcHm_v2.0_Chr6g0245381 Rosa chinensis HOM05D004439 ORTHO05D005670 4.3e-78 296.2 204 66.7
RcHm_v2.0_Chr5g0068871 Rosa chinensis HOM05D004439 ORTHO05D005670 2.8e-69 266.9 282 50.0
RcHm_v2.0_Chr6g0245391 Rosa chinensis HOM05D004439 ORTHO05D005670 5.3e-68 262.7 217 60.8
AL3G52130 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 1.1e-60 238.4 259 58.3
TPR.G191 Trifolium pratense HOM05D004439 ORTHO05D005670 2.4e-60 237.3 175 62.9
AL1G55640 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 3.1e-60 236.9 257 58.0
MELO3C027184.2 Cucumis melo HOM05D004439 ORTHO05D005670 4.7e-48 196.4 118 72.9
TPR.G9934 Trifolium pratense HOM05D004439 ORTHO05D005670 6.1e-48 196.1 213 51.6
AL2G23180 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 8.0e-48 195.7 257 52.1
SEGI_14966 Sequoiadendron giganteum HOM05D004439 ORTHO05D005670 1.4e-47 194.9 201 47.8
PSO063G0793 Papaver somniferum HOM05D004439 ORTHO05D005670 2.0e-46 191.0 181 55.2
MELO3C031246.2 Cucumis melo HOM05D004439 ORTHO05D005670 7.0e-36 156.0 158 51.3
MD14G1127600 Malus domestica HOM05D004439 ORTHO05D005670 6.5e-34 149.4 111 64.9
PGSC0003DMG400012290 Solanum tuberosum HOM05D004439 ORTHO05D005670 8.0e-32 142.5 235 37.9
AL1G44430 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 1.0e-31 142.1 86 82.6
TPR.G9939 Trifolium pratense HOM05D004439 ORTHO05D005670 6.8e-31 139.4 202 41.1
Os05g0358200 Oryza sativa ssp. japonica HOM05D004439 ORTHO05D005670 8.8e-31 139.0 107 59.8
TPR.G3794 Trifolium pratense HOM05D004439 ORTHO05D005670 4.4e-30 136.7 99 62.6
MD06G1072700 Malus domestica HOM05D004439 ORTHO05D005670 2.7e-19 100.9 60 75.0
SEGI_35904 Sequoiadendron giganteum HOM05D004439 ORTHO05D000007 6.6e-18 96.3 124 41.9
Lj2A169G39 Lonicera japonica HOM05D004439 ORTHO05D005670 2.1e-16 91.3 73 56.2
TPR.G22107 Trifolium pratense HOM05D004439 ORTHO05D005670 1.2e-14 85.5 70 54.3
BraA07t29785Z Brassica rapa HOM05D004439 ORTHO05D043038 7.8e-11 72.8 40 87.5
BolC6t37210H Brassica oleracea HOM05D004439 ORTHO05D043038 1.5e-09 68.6 40 85.0
Actinidia27324 Actinidia chinensis HOM05D004439 ORTHO05D005670 1.8e-07 61.6 33 75.8
Actinidia22721 Actinidia chinensis HOM05D004439 ORTHO05D057326 2.3e-07 61.2 84 44.0
Actinidia27321 Actinidia chinensis HOM05D004439 ORTHO05D005670 3.1e-07 60.8 42 59.5
Actinidia27323 Actinidia chinensis HOM05D004439 ORTHO05D005670 8.9e-07 59.3 80 43.8


User provided reference genes

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