Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g07838 Brassica carinata HOM05D006473 ORTHO05D008108 2.3e-87 325.5 157 100.0
BraA05t20604Z Brassica rapa HOM05D006473 ORTHO05D008108 4.8e-77 291.2 161 90.1
C06p16570 Brassica napus HOM05D006473 ORTHO05D008108 1.4e-76 289.7 161 89.4
BolC6t36859H Brassica oleracea HOM05D006473 ORTHO05D008108 1.4e-76 289.7 161 89.4
BcaC08g44251 Brassica carinata HOM05D006473 ORTHO05D008108 4.0e-76 288.1 161 88.8
A05p16970 Brassica napus HOM05D006473 ORTHO05D008108 6.9e-76 287.3 161 88.8
Sp7g13370 Schrenkiella parvula HOM05D006473 ORTHO05D008108 5.1e-63 244.6 167 75.4
BcaC07g37876 Brassica carinata HOM05D006473 ORTHO05D008108 5.7e-62 241.1 161 78.3
BolC8t48269H Brassica oleracea HOM05D006473 ORTHO05D008108 5.7e-62 241.1 161 78.3
A08p11670 Brassica napus HOM05D006473 ORTHO05D008108 2.8e-61 238.8 153 79.1
BraA08t33161Z Brassica rapa HOM05D006473 ORTHO05D008108 2.8e-61 238.8 153 79.1
Thhalv10027487m.g Eutrema salsugineum HOM05D006473 ORTHO05D008108 8.5e-58 227.3 153 73.2
CARHR221880 Cardamine hirsuta HOM05D006473 ORTHO05D008108 1.1e-57 226.9 164 72.6
Carub.0007s2685 Capsella rubella HOM05D006473 ORTHO05D008108 2.5e-57 225.7 155 73.5
AL7G40560 Arabidopsis lyrata HOM05D006473 ORTHO05D008108 8.7e-55 217.2 150 72.0
BcaB04g18284 Brassica carinata HOM05D006473 ORTHO05D008108 1.1e-54 216.9 160 72.5
AT4G15140 Arabidopsis thaliana HOM05D006473 ORTHO05D008108 1.5e-54 216.5 152 72.4
Aa31LG9G2250 Aethionema arabicum HOM05D006473 ORTHO05D008108 1.5e-43 179.9 168 57.7
THA.LOC104808506 Tarenaya hassleriana HOM05D006473 ORTHO05D008108 9.7e-38 160.6 167 55.1
FAN05G1961 Fragaria x ananassa HOM05D006473 ORTHO05D008108 1.0e-26 124.0 165 46.1
RcHm_v2.0_Chr2g0153221 Rosa chinensis HOM05D006473 ORTHO05D008108 2.2e-26 122.9 181 43.1
FvH4_6g39300 Fragaria vesca HOM05D006473 ORTHO05D008108 2.5e-25 119.4 163 45.4
Potri.006G008000 Populus trichocarpa HOM05D006473 ORTHO05D008108 7.2e-25 117.9 168 45.2
Prupe.3G184300 Prunus persica HOM05D006473 ORTHO05D008108 1.2e-24 117.1 165 47.3
PGR031G0759 Punica granatum HOM05D006473 ORTHO05D008108 1.2e-24 117.1 168 43.5
Thecc.01G174700 Theobroma cacao HOM05D006473 ORTHO05D008108 1.2e-24 117.1 167 43.7
COL.COLO4_19989 Corchorus olitorius HOM05D006473 ORTHO05D008108 3.6e-24 115.5 172 41.9
TWI34G1686 Tripterygium wilfordii HOM05D006473 ORTHO05D008108 8.0e-24 114.4 171 42.7
Cfa023365 Carpinus fangiana HOM05D006473 ORTHO05D008108 1.0e-23 114.0 169 43.8
Duzib138G0874 Durio zibethinus HOM05D006473 ORTHO05D008108 1.0e-23 114.0 168 43.5
Ciclev10012907m.g Citrus clementina HOM05D006473 ORTHO05D008108 1.4e-23 113.6 153 46.4
Haze_13544 Corylus avellana HOM05D006473 ORTHO05D008108 1.4e-23 113.6 175 42.9
MD17G1129800 Malus domestica HOM05D006473 ORTHO05D008108 1.4e-23 113.6 183 43.7
arahy.Tifrunner.gnm1.ann1.UN21ID Arachis hypogaea HOM05D006473 ORTHO05D008108 1.8e-23 113.2 148 47.3
ClCG11G016910 Citrullus lanatus HOM05D006473 ORTHO05D008108 1.8e-23 113.2 156 42.9
MD09G1143500 Malus domestica HOM05D006473 ORTHO05D008108 2.3e-23 112.8 165 43.6
Sabra06G0006200 Salix brachista HOM05D006473 ORTHO05D008108 3.0e-23 112.5 181 41.4
FAN09G0937 Fragaria x ananassa HOM05D006473 ORTHO05D008108 4.0e-23 112.1 172 43.0
FAN14G2613 Fragaria x ananassa HOM05D006473 ORTHO05D008108 4.0e-23 112.1 172 43.0
Glyma.20G063000 Glycine max HOM05D006473 ORTHO05D008108 6.8e-23 111.3 152 46.7
CiPaw.03G109100 Carya illinoinensis HOM05D006473 ORTHO05D008108 8.8e-23 110.9 164 43.9
CANSAT64G1482 Cannabis sativa HOM05D006473 ORTHO05D008108 2.6e-22 109.4 168 45.2
Gorai.007G172600 Gossypium raimondii HOM05D006473 ORTHO05D008108 2.6e-22 109.4 174 37.4
Lj6g0005292 Lotus japonicus HOM05D006473 ORTHO05D008108 2.6e-22 109.4 166 44.0
MELO3C026363.2 Cucumis melo HOM05D006473 ORTHO05D008108 3.4e-22 109.0 152 42.1
Gohir.D11G162300 Gossypium hirsutum HOM05D006473 ORTHO05D008108 3.4e-22 109.0 174 37.4
Sed0027280 Sechium edule HOM05D006473 ORTHO05D008108 3.4e-22 109.0 163 42.3
arahy.Tifrunner.gnm1.ann1.ITU10B Arachis hypogaea HOM05D006473 ORTHO05D008108 5.7e-22 108.2 149 46.3
Glyma.13G004200 Glycine max HOM05D006473 ORTHO05D008108 5.7e-22 108.2 162 45.1
COL.COLO4_18222 Corchorus olitorius HOM05D006473 ORTHO05D008108 7.5e-22 107.8 174 39.7
Phvul.007G120134 Phaseolus vulgaris HOM05D006473 ORTHO05D008108 7.5e-22 107.8 164 42.7
Gohir.A11G155300 Gossypium hirsutum HOM05D006473 ORTHO05D008108 9.8e-22 107.5 175 36.6
QL07p025679 Quercus lobata HOM05D006473 ORTHO05D008108 9.8e-22 107.5 178 42.1
CsaV3_4G032520 Cucumis sativus L. HOM05D006473 ORTHO05D008108 2.8e-21 105.9 156 40.4
Medtr3g082070 Medicago truncatula HOM05D006473 ORTHO05D008108 6.3e-21 104.8 150 45.3
VMungo0540G0033 Vigna mungo HOM05D006473 ORTHO05D008108 8.3e-21 104.4 148 45.3
TPR.G17559 Trifolium pratense HOM05D006473 ORTHO05D008108 1.8e-20 103.2 164 42.1
Sabra16G0000300 Salix brachista HOM05D006473 ORTHO05D008108 2.4e-20 102.8 169 42.0
QL10p019398 Quercus lobata HOM05D006473 ORTHO05D008108 4.1e-20 102.1 170 43.5
Eucgr.A00949 Eucalyptus grandis HOM05D006473 ORTHO05D008108 5.4e-20 101.7 146 43.8
Sed0014549 Sechium edule HOM05D006473 ORTHO05D008108 7.0e-20 101.3 173 38.2
Atru.chr8.1011 Acer truncatum HOM05D006473 ORTHO05D008108 2.7e-19 99.4 144 41.0
Lalb_Chr17g0337141 Lupinus albus HOM05D006473 ORTHO05D008108 3.5e-19 99.0 154 44.2
Psat5g106240 Pisum sativum HOM05D006473 ORTHO05D008108 5.9e-19 98.2 155 43.2
TAR626G1390 Trochodendron aralioides HOM05D006473 ORTHO05D008108 1.0e-18 97.4 136 47.8
CiPaw.04G072200 Carya illinoinensis HOM05D006473 ORTHO05D008108 1.3e-18 97.1 156 42.3
Nn7g38339 Nelumbo nucifera HOM05D006473 ORTHO05D008108 1.3e-18 97.1 137 46.0
Manes.08G068100 Manihot esculenta HOM05D006473 ORTHO05D008108 1.7e-18 96.7 153 42.5
QL07p026949 Quercus lobata HOM05D006473 ORTHO05D008108 3.8e-18 95.5 182 39.6
QL07p027003 Quercus lobata HOM05D006473 ORTHO05D008108 3.8e-18 95.5 182 39.6
TAR626G1015 Trochodendron aralioides HOM05D006473 ORTHO05D008108 3.3e-17 92.4 134 47.0
CAN.G529.20 Capsicum annuum HOM05D006473 ORTHO05D008108 5.5e-17 91.7 140 40.7
Lsat_1_v5_gn_1_29560 Lactuca sativa HOM05D006473 ORTHO05D008108 7.2e-17 91.3 178 37.6
Peaxi162Scf00393g01011 Petunia axillaris HOM05D006473 ORTHO05D008108 1.6e-16 90.1 154 39.6
Solyc07g043070.3 Solanum lycopersicum HOM05D006473 ORTHO05D008108 1.6e-16 90.1 164 37.2
Sopen07g022630 Solanum pennellii HOM05D006473 ORTHO05D008108 1.6e-16 90.1 164 37.2
Cpa.g.sc8.265 Carica papaya HOM05D006473 ORTHO05D008108 3.6e-16 89.0 179 38.0
Cc00_g04870 Coffea canephora HOM05D006473 ORTHO05D008108 4.7e-16 88.6 155 36.8
Haze_13545 Corylus avellana HOM05D006473 ORTHO05D008108 2.3e-15 86.3 137 40.9
PGSC0003DMG400013558 Solanum tuberosum HOM05D006473 ORTHO05D008108 4.0e-15 85.5 155 37.4
Ca_16320_v3 Cicer arietinum L. HOM05D006473 ORTHO05D008108 5.2e-15 85.1 134 39.6
ECA247G3587 Erigeron canadensis HOM05D006473 ORTHO05D008108 5.2e-15 85.1 171 38.0
Nitab4.5_0002292g0030 Nicotiana tabacum HOM05D006473 ORTHO05D008108 1.2e-14 84.0 153 35.9
Aqoxy5G02466 Aquilegia oxysepala HOM05D006473 ORTHO05D008108 3.4e-14 82.4 132 43.9
CDE05G3197 Ceratophyllum demersum HOM05D006473 ORTHO05D008108 5.7e-14 81.6 123 41.5
Nitab4.5_0011512g0010 Nicotiana tabacum HOM05D006473 ORTHO05D008108 5.7e-14 81.6 153 37.9
Peaxi162Scf00322g00416 Petunia axillaris HOM05D006473 ORTHO05D008108 5.7e-14 81.6 169 34.9
GSVIVG01015888001 Vitis vinifera HOM05D006473 ORTHO05D008108 9.8e-14 80.9 138 45.7
HanXRQChr02g0035171 Helianthus annuus HOM05D006473 ORTHO05D008108 1.7e-13 80.1 163 35.6
QL07p026979 Quercus lobata HOM05D006473 ORTHO05D008108 1.7e-13 80.1 69 60.9
Hund04387 Selenicereus undatus HOM05D006473 ORTHO05D008108 1.7e-13 80.1 152 33.6
EL10Ac6g15336 Beta vulgaris HOM05D006473 ORTHO05D008108 2.8e-13 79.3 126 37.3
Sc07g0001930 Simmondsia chinensis HOM05D006473 ORTHO05D008108 2.8e-13 79.3 147 38.1
Migut.H01260 Erythranthe guttata HOM05D006473 ORTHO05D008108 4.9e-13 78.6 152 38.8
QL09p045725 Quercus lobata HOM05D006473 ORTHO05D008108 8.3e-13 77.8 70 58.6
Hund23023 Selenicereus undatus HOM05D006473 ORTHO05D008108 1.1e-12 77.4 154 33.1
QL04p064817 Quercus lobata HOM05D006473 ORTHO05D008108 1.8e-12 76.6 150 38.7
vmacro08765 Vaccinium macrocarpon HOM05D006473 ORTHO05D008108 3.1e-12 75.9 154 36.4
HPP92_016064 Vanilla planifolia HOM05D006473 ORTHO05D008108 1.2e-11 73.9 130 38.5
DCAR_029496 Daucus carota HOM05D006473 ORTHO05D008108 1.0e-10 70.9 168 31.0
Rhsim12G0015400 Rhododendron simsii HOM05D006473 ORTHO05D008108 1.7e-10 70.1 139 36.0
Cpa.g.sc32.52 Carica papaya HOM05D006473 ORTHO05D008108 2.3e-10 69.7 150 38.7
QL04p064939 Quercus lobata HOM05D006473 ORTHO05D008108 6.6e-10 68.2 149 36.2
CSS0026100 Camellia sinensis var. sinensis HOM05D006473 ORTHO05D008108 8.6e-10 67.8 169 32.0
CSS0046570 Camellia sinensis var. sinensis HOM05D006473 ORTHO05D008108 8.6e-10 67.8 169 32.0
Actinidia32074 Actinidia chinensis HOM05D006473 ORTHO05D008108 1.1e-09 67.4 184 31.5
PSO675G8005 Papaver somniferum HOM05D006473 ORTHO05D008108 1.9e-09 66.6 145 37.2
Nitab4.5_0000170g0320 Nicotiana tabacum HOM05D006473 ORTHO05D008108 4.3e-09 65.5 49 57.1
AUR62017858 Chenopodium quinoa HOM05D006473 ORTHO05D008108 9.5e-09 64.3 128 35.2
Actinidia12507 Actinidia chinensis HOM05D006473 ORTHO05D008108 1.2e-08 63.9 170 34.1
MBI02_g01129_MAGBIO Magnolia biondii HOM05D006464 ORTHO05D007923 2.8e-08 62.8 87 42.5
Oeu036758.1 Olea europaea HOM05D006473 ORTHO05D008108 8.0e-08 61.2 129 35.7
SGA_v2.0_scaffold49G18372 Striga asiatica HOM05D006473 ORTHO05D008108 1.0e-07 60.8 130 38.5
CDE11G0296 Ceratophyllum demersum HOM05D006473 ORTHO05D008108 4.0e-07 58.9 90 38.9
unitig_62.g23243 Utricularia gibba HOM05D006473 ORTHO05D008108 2.0e-06 56.6 92 39.1
Os04g0504200 Oryza sativa ssp. japonica HOM05D006473 ORTHO05D008108 3.4e-06 55.8 145 29.0
ATR0763G071 Amborella trichopoda HOM05D006473 ORTHO05D008108 4.4e-06 55.5 129 34.9


User provided reference genes

Program Settings