Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g07773 Brassica carinata HOM05D004804 ORTHO05D005882 4.1e-212 741.1 368 100.0
BolC6t37342H Brassica oleracea HOM05D004804 ORTHO05D005882 3.0e-199 698.4 368 95.1
BcaC08g44637 Brassica carinata HOM05D004804 ORTHO05D005882 2.0e-198 695.7 368 94.3
C06p21540 Brassica napus HOM05D004804 ORTHO05D005882 2.0e-198 695.7 368 94.3
A07p21740 Brassica napus HOM05D004804 ORTHO05D005882 4.4e-198 694.5 369 94.6
BraA07t29856Z Brassica rapa HOM05D004804 ORTHO05D005882 1.1e-196 689.9 370 94.3
Sp5g08760 Schrenkiella parvula HOM05D004804 ORTHO05D005882 2.7e-187 658.7 368 89.7
AT3G53580 Arabidopsis thaliana HOM05D004804 ORTHO05D005882 1.7e-186 656.0 368 89.4
BraA09t40124Z Brassica rapa HOM05D004804 ORTHO05D005882 3.3e-185 651.7 370 88.1
BcaB01g00261 Brassica carinata HOM05D004804 ORTHO05D005882 5.6e-185 651.0 369 88.3
AL5G34510 Arabidopsis lyrata HOM05D004804 ORTHO05D005882 3.6e-184 648.3 368 88.9
A09p46600 Brassica napus HOM05D004804 ORTHO05D005882 6.1e-184 647.5 368 88.0
CARHR163490 Cardamine hirsuta HOM05D004804 ORTHO05D005882 2.0e-182 642.5 370 88.6
Carub.0005s2015 Capsella rubella HOM05D004804 ORTHO05D005882 4.4e-182 641.3 370 87.8
Thhalv10010477m.g Eutrema salsugineum HOM05D004804 ORTHO05D005882 3.2e-180 635.2 371 87.1
C08p28920 Brassica napus HOM05D004804 ORTHO05D005882 1.6e-179 632.9 368 86.7
Aa31LG5G22830 Aethionema arabicum HOM05D004804 ORTHO05D005882 1.9e-172 609.4 368 82.3
Thhalv10016845m.g Eutrema salsugineum HOM05D004804 ORTHO05D005882 1.2e-171 606.7 367 82.3
Sp4g19750 Schrenkiella parvula HOM05D004804 ORTHO05D005882 1.5e-169 599.7 368 81.2
A05p08530 Brassica napus HOM05D004804 ORTHO05D005882 3.3e-169 598.6 369 81.3
BraA05t19821Z Brassica rapa HOM05D004804 ORTHO05D005882 4.3e-169 598.2 369 81.3
BolC4t22652H Brassica oleracea HOM05D004804 ORTHO05D005882 3.6e-168 595.1 370 80.0
C04p10610 Brassica napus HOM05D004804 ORTHO05D005882 1.4e-167 593.2 370 79.7
BcaNung07017 Brassica carinata HOM05D004804 ORTHO05D005882 1.9e-161 572.8 340 86.2
THA.LOC104806587 Tarenaya hassleriana HOM05D004804 ORTHO05D005882 6.8e-159 564.3 368 76.1
COL.COLO4_14869 Corchorus olitorius HOM05D004804 ORTHO05D005882 2.2e-157 559.3 368 76.4
Gohir.D04G118600 Gossypium hirsutum HOM05D004804 ORTHO05D005882 9.2e-156 553.9 368 73.9
Duzib093G1125 Durio zibethinus HOM05D004804 ORTHO05D005882 1.7e-154 549.7 368 75.0
Gorai.009G423800 Gossypium raimondii HOM05D004804 ORTHO05D005882 2.3e-154 549.3 369 73.7
Gohir.A04G079400 Gossypium hirsutum HOM05D004804 ORTHO05D005882 3.3e-153 545.4 368 73.1
CsaV3_4G024670 Cucumis sativus L. HOM05D004804 ORTHO05D005882 4.7e-152 541.6 362 73.5
GSVIVG01025612001 Vitis vinifera HOM05D004804 ORTHO05D005882 1.1e-151 540.4 310 82.3
QL07p046693 Quercus lobata HOM05D004804 ORTHO05D005882 2.4e-151 539.3 367 72.8
RcHm_v2.0_Chr3g0467571 Rosa chinensis HOM05D004804 ORTHO05D005882 3.1e-151 538.9 365 74.2
Thecc.05G045900 Theobroma cacao HOM05D004804 ORTHO05D005882 6.9e-151 537.7 368 73.9
FvH4_6g14490 Fragaria vesca HOM05D004804 ORTHO05D005882 2.6e-150 535.8 369 72.1
MD04G1119400 Malus domestica HOM05D004804 ORTHO05D005882 5.8e-150 534.6 365 72.3
Hma1.2p1_1481F.1_g286070 Hydrangea macrophylla HOM05D004804 ORTHO05D005882 7.6e-150 534.3 313 80.5
CANSAT80G2153 Cannabis sativa HOM05D004804 ORTHO05D005882 9.9e-150 533.9 364 72.8
CiPaw.09G187800 Carya illinoinensis HOM05D004804 ORTHO05D005882 9.9e-150 533.9 367 72.8
TWI53G1005 Tripterygium wilfordii HOM05D004804 ORTHO05D005882 9.9e-150 533.9 374 71.9
MD12G1136700 Malus domestica HOM05D004804 ORTHO05D005882 3.8e-149 531.9 367 71.9
Ciclev10012025m.g Citrus clementina HOM05D004804 ORTHO05D005882 6.4e-149 531.2 367 71.7
Hund13338 Selenicereus undatus HOM05D004804 ORTHO05D005882 6.4e-149 531.2 325 78.2
Ah.10g030750 Amaranthus hybridus HOM05D004804 ORTHO05D005882 1.4e-148 530.0 338 76.9
Haze_20724 Corylus avellana HOM05D004804 ORTHO05D005882 1.4e-148 530.0 326 78.5
Potri.016G120900 Populus trichocarpa HOM05D004804 ORTHO05D005882 1.4e-148 530.0 365 72.9
Eucgr.K03171 Eucalyptus grandis HOM05D004804 ORTHO05D005882 1.9e-148 529.6 360 74.4
Sed0001519 Sechium edule HOM05D004804 ORTHO05D005882 2.4e-148 529.3 369 71.3
Manes.08G076545 Manihot esculenta HOM05D004804 ORTHO05D005882 7.1e-148 527.7 369 70.7
Cfa017439 Carpinus fangiana HOM05D004804 ORTHO05D005882 9.3e-148 527.3 373 71.8
Atru.chr8.1921 Acer truncatum HOM05D004804 ORTHO05D005882 2.1e-147 526.2 371 71.4
ClCG04G008480 Citrullus lanatus HOM05D004804 ORTHO05D005882 2.1e-147 526.2 382 69.1
Cc06_g03070 Coffea canephora HOM05D004804 ORTHO05D005882 1.0e-146 523.9 354 72.6
FAN02G1589 Fragaria x ananassa HOM05D004804 ORTHO05D005882 1.3e-146 523.5 369 71.0
Sc01g0003910 Simmondsia chinensis HOM05D004804 ORTHO05D005882 1.3e-146 523.5 343 73.8
Nn2g12889 Nelumbo nucifera HOM05D004804 ORTHO05D005882 1.7e-146 523.1 368 69.3
Potri.006G102700 Populus trichocarpa HOM05D004804 ORTHO05D005882 2.3e-146 522.7 319 78.7
PSO339G6548 Papaver somniferum HOM05D004804 ORTHO05D005882 3.0e-146 522.3 342 74.3
TAR623G1260 Trochodendron aralioides HOM05D004804 ORTHO05D005882 3.0e-146 522.3 314 78.0
PSO384G4865 Papaver somniferum HOM05D004804 ORTHO05D005882 6.6e-146 521.2 342 74.0
PGR004G0439 Punica granatum HOM05D004804 ORTHO05D005882 6.6e-146 521.2 374 70.9
FAN09G0808 Fragaria x ananassa HOM05D004804 ORTHO05D005882 1.1e-145 520.4 368 71.5
MSTRG.5692 Avicennia marina HOM05D004804 ORTHO05D005882 1.5e-145 520.0 371 69.3
Aqoxy4G03017 Aquilegia oxysepala HOM05D004804 ORTHO05D005882 1.9e-145 519.6 323 78.3
BcaNung07160 Brassica carinata HOM05D004804 ORTHO05D005882 1.9e-145 519.6 368 74.7
EL10Ac2g02842 Beta vulgaris HOM05D004804 ORTHO05D005882 2.5e-145 519.2 370 71.4
Dinv37213 Davidia involucrata HOM05D004804 ORTHO05D005882 5.6e-145 518.1 366 68.9
Actinidia05292 Actinidia chinensis HOM05D004804 ORTHO05D005882 1.3e-144 516.9 317 76.7
BcaC07g39720 Brassica carinata HOM05D004804 ORTHO05D005882 2.8e-144 515.8 340 79.7
SalBow4G1685 Salvia bowleyana HOM05D004804 ORTHO05D005882 3.6e-144 515.4 354 72.3
Zm00001eb136710 Zea mays HOM05D004804 ORTHO05D005882 4.8e-144 515.0 306 79.1
Lj2A100T74 Lonicera japonica HOM05D004804 ORTHO05D005882 6.2e-144 514.6 324 75.9
DCAR_009258 Daucus carota HOM05D004804 ORTHO05D005882 3.1e-143 512.3 314 77.1
Lsat_1_v5_gn_2_111181 Lactuca sativa HOM05D004804 ORTHO05D005882 5.3e-143 511.5 366 67.8
AUR62026834 Chenopodium quinoa HOM05D004804 ORTHO05D005882 6.9e-143 511.1 368 69.8
SGA_v2.0_scaffold126G33837 Striga asiatica HOM05D004804 ORTHO05D005882 9.0e-143 510.8 365 69.9
ECA238G1409 Erigeron canadensis HOM05D004804 ORTHO05D005882 1.2e-142 510.4 373 67.3
SalBow1G1981 Salvia bowleyana HOM05D004804 ORTHO05D005882 1.2e-142 510.4 368 69.6
Glyma.19G174300 Glycine max HOM05D004804 ORTHO05D005882 3.4e-142 508.8 375 66.4
Solyc09g005700.3 Solanum lycopersicum HOM05D004804 ORTHO05D005882 3.4e-142 508.8 369 69.4
Lalb_Chr25g0289471 Lupinus albus HOM05D004804 ORTHO05D005882 7.6e-142 507.7 366 68.3
Peaxi162Scf00039g00093 Petunia axillaris HOM05D004804 ORTHO05D005882 7.6e-142 507.7 319 76.2
arahy.Tifrunner.gnm1.ann1.EYL599 Arachis hypogaea HOM05D004804 ORTHO05D005882 9.9e-142 507.3 368 68.5
Oeu029811.2 Olea europaea HOM05D004804 ORTHO05D005882 1.7e-141 506.5 355 71.0
Glyma.03G173400 Glycine max HOM05D004804 ORTHO05D005882 2.9e-141 505.8 373 68.1
CAN.G125.11 Capsicum annuum HOM05D004804 ORTHO05D005882 2.4e-140 502.7 298 78.2
FAN14G5408 Fragaria x ananassa HOM05D004804 ORTHO05D005882 4.2e-140 501.9 368 69.0
Migut.J00372 Erythranthe guttata HOM05D004804 ORTHO05D005882 7.1e-140 501.1 369 68.3
Migut.L01624 Erythranthe guttata HOM05D004804 ORTHO05D005882 7.1e-140 501.1 312 75.6
Rhsim05G0187300 Rhododendron simsii HOM05D004804 ORTHO05D005882 7.1e-140 501.1 396 63.6
Nitab4.5_0002995g0070 Nicotiana tabacum HOM05D004804 ORTHO05D005882 9.3e-140 500.7 362 68.8
Phvul.001G170900 Phaseolus vulgaris HOM05D004804 ORTHO05D005882 2.1e-139 499.6 368 66.6
CDE08G0350 Ceratophyllum demersum HOM05D004804 ORTHO05D005882 6.0e-139 498.0 346 70.5
VMungo1383G1812 Vigna mungo HOM05D004804 ORTHO05D005882 1.3e-138 496.9 368 66.6
HanXRQChr14g0453791 Helianthus annuus HOM05D004804 ORTHO05D005882 2.3e-138 496.1 378 65.1
Lj1g0023900 Lotus japonicus HOM05D004804 ORTHO05D005882 2.3e-138 496.1 313 72.8
TPR.G21455 Trifolium pratense HOM05D004804 ORTHO05D005882 4.3e-137 491.9 368 64.4
Lalb_Chr20g0113121 Lupinus albus HOM05D004804 ORTHO05D005882 5.6e-137 491.5 368 66.6
Ca_07739_v3 Cicer arietinum L. HOM05D004804 ORTHO05D005882 2.1e-136 489.6 372 66.4
Medtr7g100345 Medicago truncatula HOM05D004804 ORTHO05D005882 3.7e-136 488.8 368 64.4
unitig_27.g24899 Utricularia gibba HOM05D002116 ORTHO05D005882 4.8e-136 488.4 309 73.5
ATR0033G037 Amborella trichopoda HOM05D004804 ORTHO05D005882 8.1e-136 487.6 321 71.7
HPP92_019459 Vanilla planifolia HOM05D004804 ORTHO05D005882 3.1e-135 485.7 354 69.2
Actinidia19758 Actinidia chinensis HOM05D004804 ORTHO05D001149 4.0e-135 485.3 364 67.6
Ca_08795_v3 Cicer arietinum L. HOM05D004804 ORTHO05D005882 1.3e-133 480.3 366 65.0
vmacro20115 Vaccinium macrocarpon HOM05D004804 ORTHO05D005882 2.9e-133 479.2 315 73.3
Nitab4.5_0004851g0050 Nicotiana tabacum HOM05D004804 ORTHO05D005882 1.3e-130 470.3 484 53.1
MELO3C003100.2 Cucumis melo HOM05D004804 ORTHO05D005882 3.9e-130 468.8 385 63.6
CSS0039312 Camellia sinensis var. sinensis HOM05D004804 ORTHO05D001149 3.3e-129 465.7 334 70.7
Nitab4.5_0005039g0030 Nicotiana tabacum HOM05D004804 ORTHO05D005882 4.3e-129 465.3 384 63.0
Sabra06G0079000 Salix brachista HOM05D004804 ORTHO05D005882 6.9e-127 458.0 277 79.1
AagrBONN_evm.TU.Sc2ySwM_228.1472 Anthoceros agrestis HOM05D004804 ORTHO05D005882 6.5e-125 451.4 289 71.6
AUR62037218 Chenopodium quinoa HOM05D004804 ORTHO05D005882 2.7e-123 446.0 332 68.4
SMO118G0282 Selaginella moellendorffii HOM05D004804 ORTHO05D005882 1.2e-118 430.6 289 69.6
BolC8t50494H Brassica oleracea HOM05D004804 ORTHO05D005882 1.3e-117 427.2 340 70.3
Psat3g121680 Pisum sativum HOM05D004804 ORTHO05D005882 9.4e-116 421.0 279 72.4
Mapoly0001s0200 Marchantia polymorpha HOM05D004804 ORTHO05D005882 1.6e-115 420.2 294 68.4
Pp3c10_3520 Physcomitrium patens HOM05D004804 ORTHO05D005882 1.3e-109 400.6 355 57.2
AUR62038459 Chenopodium quinoa HOM05D004804 ORTHO05D005882 1.1e-108 397.5 242 76.4
Cre05.g237400 Chlamydomonas reinhardtii HOM05D004804 ORTHO05D005882 7.2e-108 394.8 289 65.7
Sopen09g001590 Solanum pennellii HOM05D004804 ORTHO05D005882 3.8e-101 372.5 285 66.3
MCO16G320 Micromonas commoda HOM05D004804 ORTHO05D005882 1.4e-100 370.5 287 62.0
Zm00001eb028810 Zea mays HOM05D004804 ORTHO05D005882 4.7e-99 365.5 259 68.7
SMO116G0240 Selaginella moellendorffii HOM05D004804 ORTHO05D005882 4.8e-96 355.5 294 58.8
Prupe.6G249100 Prunus persica HOM05D004804 ORTHO05D005882 3.5e-94 349.4 258 69.0
Cpa.g.c31068.3 Carica papaya HOM05D004804 ORTHO05D005882 1.5e-89 334.0 261 65.1
PRCOL_00004448 Prasinoderma coloniale HOM05D004804 ORTHO05D005882 1.3e-85 320.9 290 56.6
Cpa.g.c30481.1 Carica papaya HOM05D004804 ORTHO05D005882 3.5e-78 296.2 168 81.5
MD07G1084600 Malus domestica HOM05D004804 ORTHO05D005882 2.2e-72 276.9 161 80.1
Medtr7g072350 Medicago truncatula HOM05D004804 ORTHO05D005882 7.0e-63 245.4 222 56.8
MD07G1085800 Malus domestica HOM05D004804 ORTHO05D005882 4.7e-59 232.6 127 83.5
BcaC05g25676 Brassica carinata HOM05D004804 ORTHO05D005882 8.3e-56 221.9 148 73.0
FvH4_5g27660 Fragaria vesca HOM05D004804 ORTHO05D005882 3.5e-54 216.5 128 77.3
BcaC03g18267 Brassica carinata HOM05D004804 ORTHO05D005882 4.4e-49 199.5 220 53.6
AUR62014235 Chenopodium quinoa HOM05D004804 ORTHO05D005882 3.2e-47 193.4 333 40.8
BcaC03g18268 Brassica carinata HOM05D004804 ORTHO05D005882 9.2e-47 191.8 148 66.9
FAN18G1921 Fragaria x ananassa HOM05D004804 ORTHO05D005882 2.8e-43 180.3 100 80.0
BcaC01g02299 Brassica carinata HOM05D004804 ORTHO05D005882 4.0e-42 176.4 148 60.8
SEGI_18757 Sequoiadendron giganteum HOM05D004804 ORTHO05D005882 2.7e-38 163.7 99 72.7
SEGI_29945 Sequoiadendron giganteum HOM05D004804 ORTHO05D005882 2.8e-35 153.7 108 65.7
Hma1.2p1_0683F.1_g202920 Hydrangea macrophylla HOM05D004804 ORTHO05D005882 3.3e-28 130.2 72 83.3
SEGI_13543 Sequoiadendron giganteum HOM05D004804 ORTHO05D005882 4.6e-22 109.8 64 79.7
C03p66890 Brassica napus HOM05D004804 ORTHO05D005882 1.0e-21 108.6 67 76.1
BolC3t18959H Brassica oleracea HOM05D004804 ORTHO05D005882 1.0e-21 108.6 67 76.1
Atru.chr5.1411 Acer truncatum HOM05D004804 ORTHO05D005882 3.7e-19 100.1 57 78.9
MSTRG.19109 Avicennia marina HOM05D004804 ORTHO05D005882 2.0e-17 94.4 73 60.3
BolC5t30247H Brassica oleracea HOM05D003490 ORTHO05D039708 4.9e-16 89.7 46 82.6
C03p66880 Brassica napus HOM05D004804 ORTHO05D005882 1.1e-15 88.6 46 82.6
BolC3t18958H Brassica oleracea HOM05D004804 ORTHO05D005882 1.9e-15 87.8 45 84.4
FAN13G1509 Fragaria x ananassa HOM05D004804 ORTHO05D022561 7.4e-12 75.9 39 82.1
Rhsim01G0214400 Rhododendron simsii HOM05D004804 ORTHO05D000007 1.3e-11 75.1 35 88.6
RcHm_v2.0_Chr6g0244381 Rosa chinensis HOM05D004556 ORTHO05D005298 2.6e-09 67.4 37 86.5
CBR_g29560 Chara braunii HOM05D002780 ORTHO05D005882 1.1e-07 62.0 120 30.0
BcaB03g16084 Brassica carinata HOM05D004804 ORTHO05D001170 9.3e-07 58.9 51 58.8
SGA_v2.0_scaffold594G53100 Striga asiatica HOM05D004804 ORTHO05D005882 2.1e-06 57.8 77 46.8


User provided reference genes

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