Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g07739 Brassica carinata HOM05D005841 ORTHO05D007132 1.8e-211 739.2 431 100.0
A07p22080 Brassica napus HOM05D005841 ORTHO05D007132 7.7e-186 654.1 434 86.6
BraA07t29891Z Brassica rapa HOM05D005841 ORTHO05D007132 7.7e-186 654.1 434 86.6
Sp5g08040 Schrenkiella parvula HOM05D005841 ORTHO05D007132 7.7e-178 627.5 431 84.0
A09p47340 Brassica napus HOM05D005841 ORTHO05D007132 6.1e-175 617.8 429 80.9
BcaB01g00199 Brassica carinata HOM05D005841 ORTHO05D007132 4.0e-174 615.1 433 77.6
BolC8t50563H Brassica oleracea HOM05D005841 ORTHO05D007132 2.0e-173 612.8 430 80.5
C08p29570 Brassica napus HOM05D005841 ORTHO05D007132 2.6e-173 612.5 429 80.4
Thhalv10010421m.g Eutrema salsugineum HOM05D005841 ORTHO05D007132 2.6e-173 612.5 432 84.7
BraA09t40195Z Brassica rapa HOM05D005841 ORTHO05D007132 7.5e-173 610.9 430 80.5
AT3G54360 Arabidopsis thaliana HOM05D005841 ORTHO05D007132 9.7e-173 610.5 430 84.2
AL5G35420 Arabidopsis lyrata HOM05D005841 ORTHO05D007132 2.8e-172 609.0 431 82.6
CARHR164270 Cardamine hirsuta HOM05D005841 ORTHO05D007132 3.7e-172 608.6 421 85.0
Carub.0005s2096 Capsella rubella HOM05D005841 ORTHO05D007132 3.5e-170 602.1 431 81.9
Aa31sc488G20 Aethionema arabicum HOM05D005841 ORTHO05D007132 2.4e-163 579.3 422 73.0
BcaC08g44679 Brassica carinata HOM05D005841 ORTHO05D007132 7.2e-160 567.8 432 75.7
THA.LOC104824200 Tarenaya hassleriana HOM05D005841 ORTHO05D007132 2.0e-149 533.1 347 79.3
C06p22120 Brassica napus HOM05D005841 ORTHO05D007132 4.9e-148 528.5 302 91.7
BolC6t37399H Brassica oleracea HOM05D005841 ORTHO05D007132 4.9e-148 528.5 302 91.7
THA.LOC104809184 Tarenaya hassleriana HOM05D005841 ORTHO05D007132 2.3e-145 519.6 357 73.4
Gohir.A06G171000 Gossypium hirsutum HOM05D005841 ORTHO05D007132 3.6e-135 485.7 335 71.6
Gohir.D06G178900 Gossypium hirsutum HOM05D005841 ORTHO05D007132 8.1e-135 484.6 335 71.3
Gorai.010G208800 Gossypium raimondii HOM05D005841 ORTHO05D007132 8.1e-135 484.6 335 71.3
Atru.chr12.1096 Acer truncatum HOM05D005841 ORTHO05D007132 1.4e-134 483.8 427 59.3
Ciclev10001427m.g Citrus clementina HOM05D005841 ORTHO05D007132 8.9e-134 481.1 326 72.1
CSS0015441 Camellia sinensis var. sinensis HOM05D005841 ORTHO05D007132 7.5e-133 478.0 345 69.3
QL04p022932 Quercus lobata HOM05D005841 ORTHO05D007132 4.9e-132 475.3 380 65.0
Dinv24065 Davidia involucrata HOM05D005841 ORTHO05D007132 6.4e-132 474.9 330 70.6
Duzib128G0994 Durio zibethinus HOM05D005841 ORTHO05D007132 3.2e-131 472.6 339 69.3
COL.COLO4_09288 Corchorus olitorius HOM05D005841 ORTHO05D007132 4.1e-131 472.2 337 69.4
Thecc.10G128400 Theobroma cacao HOM05D005841 ORTHO05D007132 7.1e-131 471.5 430 57.9
TWI15G0221 Tripterygium wilfordii HOM05D005841 ORTHO05D007132 7.1e-131 471.5 341 68.3
TWI38G1535 Tripterygium wilfordii HOM05D005841 ORTHO05D007132 7.1e-131 471.5 337 68.8
Actinidia22040 Actinidia chinensis HOM05D005841 ORTHO05D007132 3.5e-130 469.2 344 68.0
CiPaw.14G011500 Carya illinoinensis HOM05D005841 ORTHO05D007132 6.0e-130 468.4 398 63.1
Glyma.04G125600 Glycine max HOM05D005841 ORTHO05D007132 1.7e-129 466.8 339 69.6
CsaV3_5G029280 Cucumis sativus L. HOM05D005841 ORTHO05D007132 3.9e-129 465.7 427 66.0
Potri.003G189400 Populus trichocarpa HOM05D005841 ORTHO05D007132 6.6e-129 464.9 340 68.5
Medtr3g011510 Medicago truncatula HOM05D005841 ORTHO05D007132 8.6e-129 464.5 355 67.9
MSTRG.19910 Avicennia marina HOM05D005841 ORTHO05D007132 1.1e-128 464.2 339 67.3
MELO3C011778.2 Cucumis melo HOM05D005841 ORTHO05D007132 1.1e-128 464.2 329 69.0
Lj3g0005753 Lotus japonicus HOM05D005841 ORTHO05D007132 2.5e-128 463.0 337 69.4
Sabra01G0025200 Salix brachista HOM05D005841 ORTHO05D007132 2.5e-128 463.0 422 58.5
vmacro07900 Vaccinium macrocarpon HOM05D005841 ORTHO05D007132 3.3e-128 462.6 329 68.7
Dinv14310 Davidia involucrata HOM05D005841 ORTHO05D007132 5.6e-128 461.8 345 67.5
Glyma.06G313000 Glycine max HOM05D005841 ORTHO05D007132 1.2e-127 460.7 339 69.3
Potri.001G036400 Populus trichocarpa HOM05D005841 ORTHO05D007132 1.2e-127 460.7 338 68.6
ECA248G0891 Erigeron canadensis HOM05D005841 ORTHO05D007132 2.8e-127 459.5 321 70.4
Rhsim03G0005600 Rhododendron simsii HOM05D005841 ORTHO05D007132 3.6e-127 459.1 323 69.3
VMungo1080G1721 Vigna mungo HOM05D005841 ORTHO05D007132 3.6e-127 459.1 339 68.1
Sed0011967 Sechium edule HOM05D005841 ORTHO05D007132 4.7e-127 458.8 330 69.1
HanXRQChr13g0390471 Helianthus annuus HOM05D005841 ORTHO05D007132 6.2e-127 458.4 323 69.3
Sed0002293 Sechium edule HOM05D005841 ORTHO05D007132 1.4e-126 457.2 325 69.8
Sc20g0000960 Simmondsia chinensis HOM05D005841 ORTHO05D007132 1.4e-126 457.2 326 69.0
PSO384G2928 Papaver somniferum HOM05D005841 ORTHO05D007132 1.8e-126 456.8 336 67.9
Lalb_Chr18g0048171 Lupinus albus HOM05D005841 ORTHO05D007132 3.1e-126 456.1 341 68.6
Phvul.005G012800 Phaseolus vulgaris HOM05D005841 ORTHO05D007132 4.0e-126 455.7 339 67.3
Manes.04G153300 Manihot esculenta HOM05D005841 ORTHO05D007132 1.5e-125 453.8 441 55.8
Oeu007758.1 Olea europaea HOM05D005841 ORTHO05D007132 2.6e-125 453.0 339 64.9
PSO339G0077 Papaver somniferum HOM05D005841 ORTHO05D007132 2.6e-125 453.0 336 67.3
Lju124A25T34 Lonicera japonica HOM05D005841 ORTHO05D007132 7.6e-125 451.4 325 70.8
Haze_02951 Corylus avellana HOM05D005841 ORTHO05D007132 1.7e-124 450.3 411 58.4
Sabra03G0139600 Salix brachista HOM05D005841 ORTHO05D007132 3.8e-124 449.1 410 59.0
DCAR_019783 Daucus carota HOM05D005841 ORTHO05D007132 6.4e-124 448.4 321 67.9
Eucgr.G03178 Eucalyptus grandis HOM05D005841 ORTHO05D007132 4.2e-123 445.7 387 62.8
Lsat_1_v5_gn_5_163601 Lactuca sativa HOM05D005841 ORTHO05D007132 1.6e-122 443.7 326 66.9
TPR.G5121 Trifolium pratense HOM05D005841 ORTHO05D007132 7.8e-122 441.4 373 63.3
Hund07799 Selenicereus undatus HOM05D005841 ORTHO05D007132 3.9e-121 439.1 423 55.8
Cc06_g15810 Coffea canephora HOM05D005841 ORTHO05D007132 6.6e-121 438.3 357 64.1
Nitab4.5_0000324g0020 Nicotiana tabacum HOM05D005841 ORTHO05D007132 7.3e-120 434.9 393 59.5
unitig_699.g19444 Utricularia gibba HOM05D005841 ORTHO05D007132 9.6e-120 434.5 317 67.5
arahy.Tifrunner.gnm1.ann1.AX9XXP Arachis hypogaea HOM05D005841 ORTHO05D007132 2.1e-119 433.3 369 60.4
Nitab4.5_0004458g0010 Nicotiana tabacum HOM05D005841 ORTHO05D007132 4.8e-119 432.2 393 59.0
MSTRG.26082 Avicennia marina HOM05D005841 ORTHO05D007132 6.2e-119 431.8 330 65.8
Peaxi162Scf00258g00731 Petunia axillaris HOM05D005841 ORTHO05D007132 8.1e-119 431.4 310 70.3
Ca_26913_v3 Cicer arietinum L. HOM05D005841 ORTHO05D007132 1.4e-118 430.6 317 68.1
CANSAT56G0667 Cannabis sativa HOM05D005841 ORTHO05D007132 1.8e-118 430.3 335 63.6
PGSC0003DMG400023670 Solanum tuberosum HOM05D005841 ORTHO05D007132 4.4e-117 425.6 301 71.8
Solyc10g080520.3 Solanum lycopersicum HOM05D005841 ORTHO05D007132 9.9e-117 424.5 384 59.6
CDE02G3427 Ceratophyllum demersum HOM05D005841 ORTHO05D007132 1.3e-116 424.1 347 60.5
EL10Ac9g20941 Beta vulgaris HOM05D005841 ORTHO05D007132 2.9e-116 422.9 329 63.8
Aqoxy3G04362 Aquilegia oxysepala HOM05D005841 ORTHO05D007132 1.9e-115 420.2 329 63.2
Sopen10g031070 Solanum pennellii HOM05D005841 ORTHO05D007132 1.9e-115 420.2 301 71.1
MBI19_g24060_MAGBIO Magnolia biondii HOM05D005841 ORTHO05D007132 1.2e-114 417.5 381 57.0
ClCG11G012870 Citrullus lanatus HOM05D005841 ORTHO05D007132 6.0e-114 415.2 300 69.7
Zm00001eb126920 Zea mays HOM05D005841 ORTHO05D007132 1.0e-113 414.5 319 63.3
Ah.07g203740 Amaranthus hybridus HOM05D005841 ORTHO05D007132 1.7e-113 413.7 328 64.6
SEGI_15550 Sequoiadendron giganteum HOM05D005841 ORTHO05D007132 8.7e-113 411.4 330 62.4
MD07G1085200 Malus domestica HOM05D005841 ORTHO05D007132 1.1e-112 411.0 335 63.3
GSVIVG01027370001 Vitis vinifera HOM05D005841 ORTHO05D007132 1.1e-112 411.0 417 54.0
AUR62041651 Chenopodium quinoa HOM05D005841 ORTHO05D007132 2.5e-112 409.8 319 63.9
Psat5g225080 Pisum sativum HOM05D005841 ORTHO05D007132 1.4e-110 404.1 281 71.9
Os01g0104100 Oryza sativa ssp. japonica HOM05D005841 ORTHO05D007132 2.4e-110 403.3 318 62.6
arahy.Tifrunner.gnm1.ann1.87YK44 Arachis hypogaea HOM05D005841 ORTHO05D007132 1.3e-108 397.5 373 56.3
AUR62035532 Chenopodium quinoa HOM05D005841 ORTHO05D007132 1.3e-108 397.5 319 63.3
Prupe.2G051700 Prunus persica HOM05D005841 ORTHO05D007132 1.3e-108 397.5 330 63.3
Nn2g15922 Nelumbo nucifera HOM05D005841 ORTHO05D007132 5.4e-107 392.1 286 68.2
RcHm_v2.0_Chr1g0330051 Rosa chinensis HOM05D005841 ORTHO05D007132 4.6e-106 389.0 321 63.6
FvH4_7g04620 Fragaria vesca HOM05D005841 ORTHO05D007132 6.0e-106 388.7 328 62.2
FAN06G4202 Fragaria x ananassa HOM05D005841 ORTHO05D007132 1.0e-100 371.3 316 61.4
FAN03G2595 Fragaria x ananassa HOM05D005841 ORTHO05D007132 1.3e-100 370.9 316 61.1
FAN06G1077 Fragaria x ananassa HOM05D005841 ORTHO05D007132 1.3e-100 370.9 316 61.1
FAN10G3225 Fragaria x ananassa HOM05D005841 ORTHO05D007132 2.2e-100 370.2 316 61.1
SGA_v2.0_scaffold69G23059 Striga asiatica HOM05D005841 ORTHO05D007132 3.8e-100 369.4 339 56.6
FAN01G0675 Fragaria x ananassa HOM05D005841 ORTHO05D007132 4.2e-99 365.9 316 60.4
Pp3c4_17260 Physcomitrium patens HOM05D005841 ORTHO05D007132 7.9e-98 361.7 314 56.7
Migut.J01841 Erythranthe guttata HOM05D005841 ORTHO05D007132 1.8e-97 360.5 339 54.6
Mapoly0042s0033 Marchantia polymorpha HOM05D005841 ORTHO05D007132 1.9e-96 357.1 329 55.0
Os02g0795300 Oryza sativa ssp. japonica HOM05D005841 ORTHO05D007132 4.0e-94 349.4 353 52.7
Gorai.011G224300 Gossypium raimondii HOM05D005841 ORTHO05D007132 7.6e-93 345.1 270 64.1
AagrBONN_evm.TU.Sc2ySwM_344.2135 Anthoceros agrestis HOM05D005841 ORTHO05D007132 1.0e-92 344.7 357 50.7
SMO194G0025 Selaginella moellendorffii HOM05D005841 ORTHO05D007132 1.0e-81 308.1 310 50.6
CSS0023245 Camellia sinensis var. sinensis HOM05D005841 ORTHO05D007132 1.5e-72 277.7 200 68.5
AUR62039567 Chenopodium quinoa HOM05D005841 ORTHO05D007132 7.4e-72 275.4 282 54.3
ATR0068G039 Amborella trichopoda HOM05D005841 ORTHO05D007132 8.0e-66 255.4 186 67.2
Ah.15g098060 Amaranthus hybridus HOM05D005841 ORTHO05D007132 1.4e-62 244.6 207 59.4
AUR62041645 Chenopodium quinoa HOM05D005841 ORTHO05D007132 9.4e-59 231.9 190 61.6
HPP92_001714 Vanilla planifolia HOM05D005841 ORTHO05D007132 1.2e-56 224.9 279 47.7
Cpa.g.sc33.143 Carica papaya HOM05D005841 ORTHO05D007132 4.8e-55 219.5 158 71.5
CBR_g19049 Chara braunii HOM05D005841 ORTHO05D007132 1.4e-54 218.0 382 36.4
Gohir.D10G200101 Gossypium hirsutum HOM05D005841 ORTHO05D007132 1.7e-52 211.1 150 68.0
Hma1.2p1_3953F.1_g338070 Hydrangea macrophylla HOM05D005841 ORTHO05D007132 9.8e-48 195.3 144 68.8
FAN03G2434 Fragaria x ananassa HOM05D005841 ORTHO05D007132 1.4e-46 191.4 129 73.6
Gohir.D10G200050 Gossypium hirsutum HOM05D005841 ORTHO05D007132 8.9e-41 172.2 115 71.3
SEGI_12352 Sequoiadendron giganteum HOM05D005841 ORTHO05D007132 2.6e-40 170.6 132 61.4
TAR629G2175 Trochodendron aralioides HOM05D005841 ORTHO05D007132 5.7e-40 169.5 146 60.3
Hma1.2p1_3953F.1_g338060 Hydrangea macrophylla HOM05D005841 ORTHO05D007132 1.5e-24 118.2 80 70.0
Lsat_1_v5_gn_1_17940 Lactuca sativa HOM05D005841 ORTHO05D007132 1.3e-20 105.1 73 68.5
SEGI_26376 Sequoiadendron giganteum HOM05D005841 ORTHO05D007132 5.2e-17 93.2 151 39.7
ATR0068G030 Amborella trichopoda HOM05D005841 ORTHO05D007132 2.3e-12 77.8 66 63.6
Cre03.g172600 Chlamydomonas reinhardtii HOM05D005841 ORTHO05D007132 9.6e-11 72.4 417 20.9
Psat0s5799g0040 Pisum sativum HOM05D005841 ORTHO05D007132 1.8e-09 68.2 71 56.3
TPR.G5122 Trifolium pratense HOM05D003377 ORTHO05D004080 3.2e-06 57.4 49 63.3
Psat7g004640 Pisum sativum HOM05D000860 ORTHO05D005731 7.1e-06 56.2 50 58.0


User provided reference genes

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