Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g07716 Brassica carinata HOM05D005893 ORTHO05D007295 4.8e-100 367.9 189 100.0
BcaC08g44701 Brassica carinata HOM05D005893 ORTHO05D007295 3.7e-92 341.7 189 92.1
A07p22290 Brassica napus HOM05D005893 ORTHO05D007295 9.1e-91 337.0 190 91.6
C06p22370 Brassica napus HOM05D005893 ORTHO05D007295 9.1e-91 337.0 190 91.6
BraA07t29907Z Brassica rapa HOM05D005893 ORTHO05D007295 3.8e-89 331.6 190 90.0
Sp5g07600 Schrenkiella parvula HOM05D005893 ORTHO05D007295 4.0e-86 321.6 195 85.1
BolC8t50606H Brassica oleracea HOM05D005893 ORTHO05D007295 3.1e-83 312.0 198 83.3
BraA09t40232Z Brassica rapa HOM05D005893 ORTHO05D007295 9.1e-83 310.5 198 82.3
A09p47740 Brassica napus HOM05D005893 ORTHO05D007295 1.2e-82 310.1 198 82.3
BcaC07g39781 Brassica carinata HOM05D005893 ORTHO05D007295 1.6e-82 309.7 197 82.2
C08p29970 Brassica napus HOM05D005893 ORTHO05D007295 3.8e-81 305.1 198 81.8
BcaB01g00158 Brassica carinata HOM05D005893 ORTHO05D007295 4.2e-80 301.6 196 80.6
Thhalv10010741m.g Eutrema salsugineum HOM05D005893 ORTHO05D007295 1.0e-73 280.4 196 78.1
CARHR164770 Cardamine hirsuta HOM05D005893 ORTHO05D007295 2.9e-68 262.3 195 72.3
Carub.0005s2142 Capsella rubella HOM05D005893 ORTHO05D007295 8.6e-65 250.8 198 70.2
AT3G54826 Arabidopsis thaliana HOM05D005893 ORTHO05D007295 1.1e-64 250.4 198 71.2
AL5G35910 Arabidopsis lyrata HOM05D005893 ORTHO05D007295 5.6e-64 248.1 198 69.7
BolC6t37424H Brassica oleracea HOM05D005893 ORTHO05D007295 3.2e-51 205.7 127 85.0
Aa31sc66G40 Aethionema arabicum HOM05D005893 ORTHO05D007295 1.1e-48 197.2 164 65.2
THA.LOC104825224 Tarenaya hassleriana HOM05D005893 ORTHO05D007295 6.2e-47 191.4 204 52.0
Lalb_Chr02g0152261 Lupinus albus HOM05D005893 ORTHO05D007295 6.2e-39 164.9 129 62.8
Zm00001eb259110 Zea mays HOM05D005893 ORTHO05D007295 9.0e-38 161.0 175 49.1
MSTRG.382 Avicennia marina HOM05D005893 ORTHO05D007295 5.8e-37 158.3 97 74.2
COL.COLO4_38473 Corchorus olitorius HOM05D005893 ORTHO05D007295 9.9e-37 157.5 126 63.5
PGR142G3224 Punica granatum HOM05D005893 ORTHO05D007295 1.3e-36 157.1 112 67.0
Cpa.g.sc53.97 Carica papaya HOM05D005893 ORTHO05D007295 1.7e-36 156.8 194 47.9
ClCG05G021120 Citrullus lanatus HOM05D005893 ORTHO05D007295 1.7e-36 156.8 100 74.0
DCAR_019095 Daucus carota HOM05D005893 ORTHO05D007295 1.7e-36 156.8 190 50.0
SalBow6G7151 Salvia bowleyana HOM05D005893 ORTHO05D007295 1.7e-36 156.8 186 47.8
TWI15G0972 Tripterygium wilfordii HOM05D005893 ORTHO05D007295 1.7e-36 156.8 197 48.7
Oeu021200.1 Olea europaea HOM05D005893 ORTHO05D007295 2.2e-36 156.4 106 67.0
Os02g0819700 Oryza sativa ssp. japonica HOM05D005893 ORTHO05D007295 2.9e-36 156.0 187 50.8
Eucgr.G02856 Eucalyptus grandis HOM05D005893 ORTHO05D007295 6.4e-36 154.8 100 73.0
CsaV3_5G036140 Cucumis sativus L. HOM05D005893 ORTHO05D007295 8.4e-36 154.5 99 73.7
Sc20g0001660 Simmondsia chinensis HOM05D005893 ORTHO05D007295 8.4e-36 154.5 98 71.4
CAN.G305.42 Capsicum annuum HOM05D005893 ORTHO05D007295 1.1e-35 154.1 108 64.8
Ciclev10030991m.g Citrus clementina HOM05D003292 ORTHO05D004237 1.1e-35 154.1 157 51.0
MELO3C012415.2 Cucumis melo HOM05D005893 ORTHO05D007295 1.1e-35 154.1 99 73.7
SalBow7G0798 Salvia bowleyana HOM05D005893 ORTHO05D007295 1.1e-35 154.1 105 67.6
Glyma.10G209400 Glycine max HOM05D005893 ORTHO05D007295 1.4e-35 153.7 192 48.4
Sed0025931 Sechium edule HOM05D005893 ORTHO05D007295 1.4e-35 153.7 100 72.0
Peaxi162Scf00431g00001 Petunia axillaris HOM05D005893 ORTHO05D007295 1.9e-35 153.3 127 60.6
Nn2g11535 Nelumbo nucifera HOM05D005893 ORTHO05D007295 2.4e-35 152.9 189 47.6
Ah.01g004770 Amaranthus hybridus HOM05D005893 ORTHO05D007295 3.2e-35 152.5 126 61.9
AUR62014260 Chenopodium quinoa HOM05D005893 ORTHO05D007295 3.2e-35 152.5 123 61.8
Dinv31211 Davidia involucrata HOM05D005893 ORTHO05D007295 3.2e-35 152.5 121 61.2
Atru.chr12.817 Acer truncatum HOM05D005893 ORTHO05D007295 4.2e-35 152.1 179 49.2
Ca_10554_v3 Cicer arietinum L. HOM05D005893 ORTHO05D007295 4.2e-35 152.1 115 61.7
Sed0005810 Sechium edule HOM05D005893 ORTHO05D007295 4.2e-35 152.1 100 70.0
Sopen05g031760 Solanum pennellii HOM05D005893 ORTHO05D007295 4.2e-35 152.1 194 44.8
unitig_46.g18354 Utricularia gibba HOM05D005893 ORTHO05D007295 4.2e-35 152.1 191 46.6
PGSC0003DMG400027152 Solanum tuberosum HOM05D005893 ORTHO05D007295 5.4e-35 151.8 135 56.3
AUR62038482 Chenopodium quinoa HOM05D005893 ORTHO05D007295 7.1e-35 151.4 126 60.3
Hma1.2p1_1458F.1_g284765 Hydrangea macrophylla HOM05D005893 ORTHO05D007295 7.1e-35 151.4 120 63.3
unitig_37.g12607 Utricularia gibba HOM05D000329 ORTHO05D002132 7.1e-35 151.4 122 57.4
Migut.F01727 Erythranthe guttata HOM05D005893 ORTHO05D007295 9.3e-35 151.0 183 48.1
Potri.008G037300 Populus trichocarpa HOM05D005893 ORTHO05D007295 9.3e-35 151.0 197 46.7
SGA_v2.0_scaffold2G01368 Striga asiatica HOM05D005893 ORTHO05D007295 9.3e-35 151.0 94 70.2
Dinv31297 Davidia involucrata HOM05D005893 ORTHO05D007295 1.6e-34 150.2 196 50.0
Gorai.009G312400 Gossypium raimondii HOM05D005893 ORTHO05D007295 1.6e-34 150.2 184 48.4
Hund09872 Selenicereus undatus HOM05D005893 ORTHO05D007295 1.6e-34 150.2 121 58.7
MBI05_g31459_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 2.1e-34 149.8 126 60.3
CANSAT56G0338 Cannabis sativa HOM05D005893 ORTHO05D007295 2.7e-34 149.4 118 63.6
Gohir.A05G295100 Gossypium hirsutum HOM05D005893 ORTHO05D007295 2.7e-34 149.4 183 49.7
Nitab4.5_0002194g0010 Nicotiana tabacum HOM05D005893 ORTHO05D007295 3.5e-34 149.1 190 48.4
Nitab4.5_0007148g0010 Nicotiana tabacum HOM05D005893 ORTHO05D007295 3.5e-34 149.1 191 47.6
Sabra08G0025100 Salix brachista HOM05D005893 ORTHO05D007295 3.5e-34 149.1 117 60.7
Cc02_g11140 Coffea canephora HOM05D005893 ORTHO05D007295 4.6e-34 148.7 109 61.5
Lj2C17T1 Lonicera japonica HOM05D005893 ORTHO05D007295 4.6e-34 148.7 183 48.6
Manes.07G096800 Manihot esculenta HOM05D005893 ORTHO05D007295 4.6e-34 148.7 198 46.0
CiPaw.01G270700 Carya illinoinensis HOM05D005893 ORTHO05D007295 7.8e-34 147.9 198 46.5
TPR.G1908 Trifolium pratense HOM05D005893 ORTHO05D007295 7.8e-34 147.9 138 55.8
Glyma.20G181200 Glycine max HOM05D005893 ORTHO05D007295 1.0e-33 147.5 192 45.3
Thecc.10G078600 Theobroma cacao HOM05D005893 ORTHO05D002604 1.0e-33 147.5 189 47.1
Duzib106G0129 Durio zibethinus HOM05D005893 ORTHO05D007295 1.3e-33 147.1 122 62.3
CSS0031267 Camellia sinensis var. sinensis HOM05D005182 ORTHO05D006631 1.7e-33 146.7 114 64.0
Gohir.D05G295800 Gossypium hirsutum HOM05D005893 ORTHO05D007295 1.7e-33 146.7 179 48.6
Cfa001666 Carpinus fangiana HOM05D005893 ORTHO05D007295 2.3e-33 146.4 199 48.2
MD07G1171800 Malus domestica HOM05D005893 ORTHO05D007295 2.3e-33 146.4 192 47.4
HPP92_025345 Vanilla planifolia HOM05D005893 ORTHO05D007295 2.3e-33 146.4 94 69.1
SEGI_03670 Sequoiadendron giganteum HOM05D005893 ORTHO05D007295 3.0e-33 146.0 114 58.8
TAR633G2388 Trochodendron aralioides HOM05D005893 ORTHO05D007295 3.9e-33 145.6 200 47.0
EL10Ac6g14183 Beta vulgaris HOM05D005893 ORTHO05D007295 5.1e-33 145.2 93 72.0
Haze_16866 Corylus avellana HOM05D005893 ORTHO05D007295 5.1e-33 145.2 124 58.9
Actinidia06754 Actinidia chinensis HOM05D005893 ORTHO05D007295 6.6e-33 144.8 95 68.4
ATR0680G313 Amborella trichopoda HOM05D005893 ORTHO05D007295 6.6e-33 144.8 97 64.9
Cfa014465 Carpinus fangiana HOM05D005893 ORTHO05D007295 6.6e-33 144.8 94 71.3
Phvul.007G096700 Phaseolus vulgaris HOM05D005893 ORTHO05D007295 6.6e-33 144.8 191 45.5
EL10Ac6g14385 Beta vulgaris HOM05D005893 ORTHO05D007295 8.7e-33 144.4 93 72.0
Psat6g182280 Pisum sativum HOM05D005893 ORTHO05D007295 8.7e-33 144.4 193 44.0
VMungo0720G1965 Vigna mungo HOM05D005893 ORTHO05D007295 8.7e-33 144.4 132 56.1
MD01G1105600 Malus domestica HOM05D005893 ORTHO05D007295 1.1e-32 144.1 186 45.7
QL08p055159 Quercus lobata HOM05D005893 ORTHO05D007295 2.5e-32 142.9 199 43.2
Lj5g0004254 Lotus japonicus HOM05D005893 ORTHO05D007295 4.3e-32 142.1 124 56.5
Lj5g0008044 Lotus japonicus HOM05D005893 ORTHO05D007295 4.3e-32 142.1 124 56.5
Lj5g0026776 Lotus japonicus HOM05D005893 ORTHO05D007295 4.3e-32 142.1 124 56.5
Hma1.2p1_1458F.1_g284770 Hydrangea macrophylla HOM05D005893 ORTHO05D007295 5.6e-32 141.7 82 79.3
Aqoxy1G01187 Aquilegia oxysepala HOM05D005893 ORTHO05D007295 1.3e-31 140.6 99 65.7
PSO339G3974 Papaver somniferum HOM05D005893 ORTHO05D007295 1.6e-31 140.2 187 45.5
RcHm_v2.0_Chr1g0362931 Rosa chinensis HOM05D005893 ORTHO05D007295 3.6e-31 139.0 191 46.1
Lsat_1_v5_gn_8_20480 Lactuca sativa HOM05D005893 ORTHO05D007295 1.8e-30 136.7 184 47.3
FvH4_7g19000 Fragaria vesca HOM05D005893 ORTHO05D007295 6.9e-30 134.8 96 60.4
FAN06G1961 Fragaria x ananassa HOM05D005893 ORTHO05D007295 6.9e-30 134.8 96 60.4
FAN06G4511 Fragaria x ananassa HOM05D005893 ORTHO05D007295 6.9e-30 134.8 96 60.4
FAN03G3224 Fragaria x ananassa HOM05D005893 ORTHO05D007295 1.2e-29 134.0 96 61.5
FAN10G0987 Fragaria x ananassa HOM05D005893 ORTHO05D007295 1.5e-29 133.7 96 60.4
HanXRQChr08g0218681 Helianthus annuus HOM05D005893 ORTHO05D007295 2.6e-29 132.9 121 53.7
Medtr1g094720 Medicago truncatula HOM05D005893 ORTHO05D007295 3.4e-29 132.5 149 48.3
FAN01G0197 Fragaria x ananassa HOM05D005893 ORTHO05D007295 4.5e-29 132.1 96 59.4
Solyc05g053250.4 Solanum lycopersicum HOM05D005893 ORTHO05D007295 7.6e-29 131.3 177 43.5
AagrBONN_evm.TU.Sc2ySwM_228.2692 Anthoceros agrestis HOM05D005893 ORTHO05D007295 3.2e-27 125.9 87 62.1
ECA233G2346 Erigeron canadensis HOM05D005893 ORTHO05D007295 3.2e-27 125.9 184 41.3
Mapoly0143s0034 Marchantia polymorpha HOM05D005893 ORTHO05D007295 4.2e-27 125.6 145 49.7
vmacro07131 Vaccinium macrocarpon HOM05D000972 ORTHO05D001783 7.1e-27 124.8 96 59.4
GSVIVG01016242001 Vitis vinifera HOM05D003292 ORTHO05D004237 4.6e-26 122.1 173 42.8
CDE01G0774 Ceratophyllum demersum HOM05D005893 ORTHO05D007295 1.8e-25 120.2 77 67.5
CBR_g38445 Chara braunii HOM05D005893 ORTHO05D007295 1.8e-25 120.2 90 57.8
Pp3c10_20870 Physcomitrium patens HOM05D005893 ORTHO05D007295 6.7e-25 118.2 120 50.0
FAN06G0522 Fragaria x ananassa HOM05D003292 ORTHO05D004237 9.0e-22 107.8 70 64.3
SGA_v2.0_scaffold223G42811 Striga asiatica HOM05D005893 ORTHO05D007295 7.6e-21 104.8 111 46.8
MBI05_g31456_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 1.2e-18 97.4 96 53.1
MCO14G392 Micromonas commoda HOM05D005893 ORTHO05D007295 2.7e-18 96.3 118 41.5
SMO364G0951 Selaginella moellendorffii HOM05D005893 ORTHO05D007295 7.9e-18 94.7 70 58.6
MBI05_g14981_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 1.8e-17 93.6 90 54.4
SGA_v2.0_scaffold51G18702 Striga asiatica HOM05D005893 ORTHO05D007295 3.7e-15 85.9 109 37.6
Cre07.g334851 Chlamydomonas reinhardtii HOM05D005893 ORTHO05D007295 4.0e-14 82.4 105 45.7
SGA_v2.0_scaffold211G42109 Striga asiatica HOM05D005893 ORTHO05D007295 6.9e-14 81.6 88 44.3
Peaxi162Scf00066g01616 Petunia axillaris HOM05D005893 ORTHO05D007295 1.0e-12 77.8 140 37.9
PRCOL_00001193 Prasinoderma coloniale HOM05D001599 ORTHO05D003184 1.1e-11 74.3 77 48.1
MBI05_g14980_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 2.5e-11 73.2 91 49.5
Mapoly0032s0026 Marchantia polymorpha HOM05D005893 ORTHO05D007295 3.0e-09 66.2 78 38.5
Cfa025074 Carpinus fangiana HOM05D005893 ORTHO05D007295 8.7e-09 64.7 73 38.4
MBI08_g29407_MAGBIO Magnolia biondii HOM05D002127 ORTHO05D007295 8.7e-09 64.7 80 45.0
MBI05_g31458_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 1.3e-07 60.8 69 50.7
MBI04_g06289_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 4.8e-07 58.9 107 35.5
vmacro10504 Vaccinium macrocarpon HOM05D002826 ORTHO05D003105 4.8e-07 58.9 109 32.1
CANSAT80G1162 Cannabis sativa HOM05D002826 ORTHO05D003105 1.8e-06 57.0 120 30.0
Potri.010G132400 Populus trichocarpa HOM05D002826 ORTHO05D003105 1.8e-06 57.0 63 39.7
Sabra10G0101100 Salix brachista HOM05D002826 ORTHO05D003105 2.4e-06 56.6 63 39.7
SGA_v2.0_scaffold59G20634 Striga asiatica HOM05D002826 ORTHO05D003105 2.4e-06 56.6 54 38.9
ClCG05G023210 Citrullus lanatus HOM05D002826 ORTHO05D003105 3.1e-06 56.2 60 38.3
HanXRQChr16g0527021 Helianthus annuus HOM05D002826 ORTHO05D003105 3.1e-06 56.2 64 39.1
MBI19_g05599_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 3.1e-06 56.2 80 41.2
Migut.E00281 Erythranthe guttata HOM05D002826 ORTHO05D003105 4.1e-06 55.8 86 34.9
RcHm_v2.0_Chr4g0436371 Rosa chinensis HOM05D002826 ORTHO05D003105 5.3e-06 55.5 96 34.4
MELO3C012198.2 Cucumis melo HOM05D002826 ORTHO05D003105 6.9e-06 55.1 60 38.3
CsaV3_5G033810 Cucumis sativus L. HOM05D002826 ORTHO05D003105 6.9e-06 55.1 60 38.3
Dinv27423 Davidia involucrata HOM05D002826 ORTHO05D003105 9.0e-06 54.7 73 35.6


User provided reference genes

Program Settings