Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g07660 Brassica carinata HOM05D010959 ORTHO05D001770 3.0e-76 288.5 150 100.0
C06p23450 Brassica napus HOM05D010959 ORTHO05D001770 5.1e-52 208.0 146 78.1
BcaC08g44774 Brassica carinata HOM05D010959 ORTHO05D001770 2.5e-51 205.7 146 77.4
BolC6t37519H Brassica oleracea HOM05D010959 ORTHO05D001770 1.2e-50 203.4 146 77.4
A07p22870 Brassica napus HOM05D010959 ORTHO05D001770 7.6e-48 194.1 150 74.7
BraA07t29953Z Brassica rapa HOM05D010959 ORTHO05D001770 7.6e-48 194.1 150 74.7
Sp5g06240 Schrenkiella parvula HOM05D010959 ORTHO05D001770 1.2e-45 186.8 145 72.4
Thhalv10006243m.g Eutrema salsugineum HOM05D010959 ORTHO05D001770 2.1e-45 186.0 141 75.2
BcaC07g39943 Brassica carinata HOM05D010959 ORTHO05D001770 5.3e-41 171.4 148 69.6
CARHR166420 Cardamine hirsuta HOM05D010959 ORTHO05D001770 2.6e-40 169.1 141 69.5
A09p49240 Brassica napus HOM05D010959 ORTHO05D001770 5.8e-40 167.9 150 67.3
BraA09t40377Z Brassica rapa HOM05D010959 ORTHO05D001770 2.2e-39 166.0 150 66.7
C08p31590 Brassica napus HOM05D010959 ORTHO05D001770 1.9e-38 162.9 149 66.4
BolC8t50780H Brassica oleracea HOM05D010959 ORTHO05D001770 1.9e-38 162.9 149 66.4
BcaB01g00009 Brassica carinata HOM05D010959 ORTHO05D001770 4.3e-35 151.8 126 70.6
Carub.0005s2304 Capsella rubella HOM05D010959 ORTHO05D001770 6.9e-25 117.9 84 70.2
AT3G56260 Arabidopsis thaliana HOM05D010959 ORTHO05D001770 3.4e-24 115.5 124 57.3
AL5G37580 Arabidopsis lyrata HOM05D010959 ORTHO05D001770 2.5e-22 109.4 123 54.5
Aa31LG10G11170 Aethionema arabicum HOM05D010959 ORTHO05D001770 1.1e-17 94.0 127 47.2
A05p01740 Brassica napus HOM05D002277 ORTHO05D001770 2.7e-13 79.3 98 51.0
C04p02010 Brassica napus HOM05D002277 ORTHO05D001770 2.7e-13 79.3 98 51.0
BolC4t21852H Brassica oleracea HOM05D002277 ORTHO05D001770 2.7e-13 79.3 98 51.0
BraA05t19171Z Brassica rapa HOM05D002277 ORTHO05D001770 7.9e-13 77.8 111 49.5
BcaC01g05398 Brassica carinata HOM05D002277 ORTHO05D001770 1.0e-12 77.4 116 44.0
THA.LOC104824354 Tarenaya hassleriana HOM05D002277 ORTHO05D001770 1.4e-12 77.0 144 47.2
BcaB01g03537 Brassica carinata HOM05D002277 ORTHO05D001770 6.7e-12 74.7 111 45.9
Sp4g22820 Schrenkiella parvula HOM05D002277 ORTHO05D001770 8.8e-12 74.3 98 49.0
A03p22770 Brassica napus HOM05D002277 ORTHO05D001770 2.5e-11 72.8 96 50.0
BraA03t11501Z Brassica rapa HOM05D002277 ORTHO05D001770 2.5e-11 72.8 96 50.0
C03p27010 Brassica napus HOM05D002277 ORTHO05D001770 9.7e-11 70.9 96 46.9
Aa31LG5G19050 Aethionema arabicum HOM05D002277 ORTHO05D001770 1.7e-10 70.1 98 49.0
BcaC02g12718 Brassica carinata HOM05D002277 ORTHO05D001770 8.2e-10 67.8 115 47.0
Potri.016G133200 Populus trichocarpa HOM05D002277 ORTHO05D001770 2.4e-09 66.2 104 51.0
Manes.07G138400 Manihot esculenta HOM05D002277 ORTHO05D001770 3.1e-09 65.9 101 48.5
CARHR135590 Cardamine hirsuta HOM05D002277 ORTHO05D001770 1.2e-08 63.9 116 41.4
CiPaw.01G304400 Carya illinoinensis HOM05D002277 ORTHO05D001770 4.5e-08 62.0 128 41.4
Manes.10G005600 Manihot esculenta HOM05D002277 ORTHO05D001770 4.5e-08 62.0 91 46.2
Cpa.g.sc19.91 Carica papaya HOM05D002277 ORTHO05D001770 5.9e-08 61.6 94 44.7
Carub.0004s2273 Capsella rubella HOM05D002277 ORTHO05D001770 7.7e-08 61.2 123 37.4
C04p68330 Brassica napus HOM05D002277 ORTHO05D001770 1.3e-07 60.5 100 44.0
Oeu024724.1 Olea europaea HOM05D002277 ORTHO05D001770 1.3e-07 60.5 107 45.8
BcaC02g07305 Brassica carinata HOM05D002277 ORTHO05D001770 1.7e-07 60.1 100 44.0
A04p30940 Brassica napus HOM05D002277 ORTHO05D001770 1.7e-07 60.1 98 43.9
BolC4t28335H Brassica oleracea HOM05D002277 ORTHO05D001770 1.7e-07 60.1 100 44.0
BraA04t18552Z Brassica rapa HOM05D002277 ORTHO05D001770 1.7e-07 60.1 98 43.9
Aqoxy85s002 Aquilegia oxysepala HOM05D002277 ORTHO05D001770 2.2e-07 59.7 44 75.0
VMungo1383G3736 Vigna mungo HOM05D002277 ORTHO05D001770 2.2e-07 59.7 119 37.8
Gorai.005G006100 Gossypium raimondii HOM05D002277 ORTHO05D001770 2.9e-07 59.3 44 70.5
Lj2C62G11 Lonicera japonica HOM05D002277 ORTHO05D001770 2.9e-07 59.3 64 51.6
Oeu003223.1 Olea europaea HOM05D002277 ORTHO05D001770 2.9e-07 59.3 117 40.2
COL.COLO4_30002 Corchorus olitorius HOM05D002277 ORTHO05D001770 3.8e-07 58.9 44 72.7
CsaV3_6G002200 Cucumis sativus L. HOM05D002277 ORTHO05D001770 5.0e-07 58.5 44 70.5
AL4G38320 Arabidopsis lyrata HOM05D002277 ORTHO05D001770 6.5e-07 58.2 97 40.2
Lalb_Chr08g0231311 Lupinus albus HOM05D002277 ORTHO05D001770 6.5e-07 58.2 114 43.9
Manes.08G172400 Manihot esculenta HOM05D002277 ORTHO05D001770 6.5e-07 58.2 123 43.1
Medtr3g072360 Medicago truncatula HOM05D002277 ORTHO05D001770 6.5e-07 58.2 109 38.5
Phvul.008G249000 Phaseolus vulgaris HOM05D002277 ORTHO05D001770 6.5e-07 58.2 91 47.3
Sed0026001 Sechium edule HOM05D002277 ORTHO05D001770 6.5e-07 58.2 103 49.5
Glyma.09G277500 Glycine max HOM05D002277 ORTHO05D001770 8.5e-07 57.8 134 35.1
Glyma.11G235700 Glycine max HOM05D002277 ORTHO05D001770 1.1e-06 57.4 68 50.0
Gohir.A10G149200 Gossypium hirsutum HOM05D002277 ORTHO05D001770 1.1e-06 57.4 82 47.6
Sabra06G0083400 Salix brachista HOM05D002277 ORTHO05D001770 1.1e-06 57.4 102 43.1
Sc11g0005700 Simmondsia chinensis HOM05D002277 ORTHO05D001770 1.1e-06 57.4 111 39.6
Cfa001229 Carpinus fangiana HOM05D002277 ORTHO05D001770 1.4e-06 57.0 47 68.1
CiPaw.09G218200 Carya illinoinensis HOM05D002277 ORTHO05D001770 1.4e-06 57.0 104 48.1
MELO3C019998.2 Cucumis melo HOM05D002277 ORTHO05D001770 1.4e-06 57.0 77 50.6
Thhalv10017268m.g Eutrema salsugineum HOM05D002277 ORTHO05D001770 1.4e-06 57.0 97 41.2
FAN21G1843 Fragaria x ananassa HOM05D002277 ORTHO05D001770 1.4e-06 57.0 83 47.0
TAR629G0672 Trochodendron aralioides HOM05D002277 ORTHO05D001770 1.4e-06 57.0 79 50.6
COL.COLO4_03891 Corchorus olitorius HOM05D002277 ORTHO05D001770 1.9e-06 56.6 43 72.1
Cc06_g00560 Coffea canephora HOM05D002277 ORTHO05D001770 2.5e-06 56.2 122 36.1
Potri.013G083101 Populus trichocarpa HOM05D002277 ORTHO05D001770 2.5e-06 56.2 44 68.2
MSTRG.27280 Avicennia marina HOM05D002277 ORTHO05D001770 3.2e-06 55.8 83 43.4
BcaB06g29146 Brassica carinata HOM05D002277 ORTHO05D001770 4.2e-06 55.5 98 40.8
ClCG11G005770 Citrullus lanatus HOM05D002277 ORTHO05D001770 4.2e-06 55.5 78 50.0
Cc02_g05610 Coffea canephora HOM05D002277 ORTHO05D001770 4.2e-06 55.5 120 40.0
Manes.09G115500 Manihot esculenta HOM05D002277 ORTHO05D001770 4.2e-06 55.5 110 40.9
TAR636G1485 Trochodendron aralioides HOM05D002277 ORTHO05D001770 4.2e-06 55.5 79 49.4
Atru.chr12.148 Acer truncatum HOM05D002277 ORTHO05D001770 5.5e-06 55.1 68 48.5
Actinidia33883 Actinidia chinensis HOM05D002277 ORTHO05D001770 5.5e-06 55.1 130 38.5
FAN02G0282 Fragaria x ananassa HOM05D002277 ORTHO05D001770 5.5e-06 55.1 117 41.9
FAN11G2787 Fragaria x ananassa HOM05D002277 ORTHO05D001770 5.5e-06 55.1 86 43.0
FAN16G0709 Fragaria x ananassa HOM05D002277 ORTHO05D001770 5.5e-06 55.1 86 43.0
HanXRQChr11g0337191 Helianthus annuus HOM05D002277 ORTHO05D001770 5.5e-06 55.1 44 65.9
Lsat_1_v5_gn_5_148320 Lactuca sativa HOM05D002277 ORTHO05D001770 5.5e-06 55.1 44 63.6
Hma1.2p1_1052F.1_g252370 Hydrangea macrophylla HOM05D002277 ORTHO05D001770 7.2e-06 54.7 98 42.9
Rhsim01G0241900 Rhododendron simsii HOM05D002277 ORTHO05D001770 7.2e-06 54.7 125 43.2
TPR.G649 Trifolium pratense HOM05D002277 ORTHO05D001770 7.2e-06 54.7 92 41.3
TWI09G0487 Tripterygium wilfordii HOM05D002277 ORTHO05D001770 7.2e-06 54.7 91 48.4
CSS0043215 Camellia sinensis var. sinensis HOM05D002277 ORTHO05D001770 9.4e-06 54.3 43 72.1
Ciclev10033390m.g Citrus clementina HOM05D002277 ORTHO05D001770 9.4e-06 54.3 118 39.0
DCAR_015348 Daucus carota HOM05D002277 ORTHO05D001770 9.4e-06 54.3 90 38.9
ECA248G3625 Erigeron canadensis HOM05D002277 ORTHO05D001770 9.4e-06 54.3 44 65.9
Gohir.A02G005000 Gossypium hirsutum HOM05D002277 ORTHO05D001770 9.4e-06 54.3 117 41.9
Gohir.D10G117600 Gossypium hirsutum HOM05D002277 ORTHO05D001770 9.4e-06 54.3 82 47.6
Gorai.011G129500 Gossypium raimondii HOM05D002277 ORTHO05D001770 9.4e-06 54.3 82 47.6
Lj1g0022794 Lotus japonicus HOM05D002277 ORTHO05D001770 9.4e-06 54.3 71 49.3
Nn2g13334 Nelumbo nucifera HOM05D002277 ORTHO05D001770 9.4e-06 54.3 81 45.7
Rhsim09G0183700 Rhododendron simsii HOM05D002277 ORTHO05D001770 9.4e-06 54.3 129 44.2
RcHm_v2.0_Chr3g0460991 Rosa chinensis HOM05D002277 ORTHO05D001770 9.4e-06 54.3 117 41.9
Sabra04G0150900 Salix brachista HOM05D002277 ORTHO05D001770 9.4e-06 54.3 94 43.6


User provided reference genes

Program Settings