Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g07659 Brassica carinata HOM05D007229 ORTHO05D009131 2.6e-95 352.1 182 100.0
BcaC08g44777 Brassica carinata HOM05D007229 ORTHO05D009131 2.8e-81 305.4 181 86.2
A07p22880 Brassica napus HOM05D007229 ORTHO05D009131 2.8e-81 305.4 181 86.2
BraA07t29954Z Brassica rapa HOM05D007229 ORTHO05D009131 2.8e-81 305.4 181 86.2
BolC6t37520H Brassica oleracea HOM05D007229 ORTHO05D009131 8.2e-81 303.9 181 85.6
C06p23470 Brassica napus HOM05D007229 ORTHO05D009131 2.4e-80 302.4 181 85.6
Sp5g06210 Schrenkiella parvula HOM05D007229 ORTHO05D009131 4.1e-80 301.6 182 85.7
A09p49260 Brassica napus HOM05D007229 ORTHO05D009131 3.8e-78 295.0 180 82.8
BraA09t40379Z Brassica rapa HOM05D007229 ORTHO05D009131 3.8e-78 295.0 180 82.8
BcaC07g39946 Brassica carinata HOM05D007229 ORTHO05D009131 1.5e-77 293.1 181 81.8
C08p31620 Brassica napus HOM05D007229 ORTHO05D009131 1.5e-77 293.1 181 81.8
BolC8t50783H Brassica oleracea HOM05D007229 ORTHO05D009131 1.5e-77 293.1 181 81.8
CARHR166450 Cardamine hirsuta HOM05D007229 ORTHO05D009131 1.5e-77 293.1 182 83.0
Thhalv10006268m.g Eutrema salsugineum HOM05D007229 ORTHO05D009131 4.2e-77 291.6 182 85.2
BcaB01g00004 Brassica carinata HOM05D007229 ORTHO05D009131 1.2e-76 290.0 181 82.9
BcaB01g00005 Brassica carinata HOM05D007229 ORTHO05D009131 1.2e-76 290.0 181 82.9
Carub.0005s2307 Capsella rubella HOM05D007229 ORTHO05D009131 1.0e-75 287.0 182 78.6
AT3G56290 Arabidopsis thaliana HOM05D007229 ORTHO05D009131 1.4e-75 286.6 181 80.7
AL5G37620 Arabidopsis lyrata HOM05D007229 ORTHO05D009131 9.8e-74 280.4 181 83.4
Aa31LG10G11190 Aethionema arabicum HOM05D007229 ORTHO05D009131 2.2e-65 252.7 191 73.3
THA.LOC104824356 Tarenaya hassleriana HOM05D007229 ORTHO05D009131 1.8e-59 233.0 184 67.4
MSTRG.27273 Avicennia marina HOM05D007229 ORTHO05D009131 2.8e-52 209.1 182 58.8
Hma1.2p1_2086F.1_g313730 Hydrangea macrophylla HOM05D007229 ORTHO05D009131 3.6e-52 208.8 183 60.1
Rhsim09G0184500 Rhododendron simsii HOM05D007229 ORTHO05D009131 1.4e-51 206.8 188 62.2
CiPaw.01G306000 Carya illinoinensis HOM05D007229 ORTHO05D009131 7.5e-50 201.1 188 63.8
Thecc.10G183800 Theobroma cacao HOM05D007229 ORTHO05D009131 7.5e-50 201.1 182 59.9
Cc02_g05510 Coffea canephora HOM05D007229 ORTHO05D009131 9.8e-50 200.7 185 58.4
GSVIVG01032702001 Vitis vinifera HOM05D007229 ORTHO05D009131 9.8e-50 200.7 187 58.3
PGR044G2361 Punica granatum HOM05D007229 ORTHO05D009131 2.2e-49 199.5 186 61.8
Gohir.D04G011900 Gossypium hirsutum HOM05D007229 ORTHO05D009131 2.9e-49 199.1 184 59.8
Oeu020108.1 Olea europaea HOM05D007229 ORTHO05D009131 2.9e-49 199.1 187 59.9
Dinv26059 Davidia involucrata HOM05D007229 ORTHO05D009131 8.3e-49 197.6 184 59.2
Gohir.A05G403900 Gossypium hirsutum HOM05D007229 ORTHO05D009131 8.3e-49 197.6 184 59.2
Haze_17350 Corylus avellana HOM05D000154 ORTHO05D000092 1.1e-48 197.2 182 60.4
Gorai.012G014100 Gossypium raimondii HOM05D007229 ORTHO05D009131 1.1e-48 197.2 184 59.2
QL08p064765 Quercus lobata HOM05D007229 ORTHO05D009131 1.4e-48 196.8 183 57.9
Medtr3g094080 Medicago truncatula HOM05D007229 ORTHO05D009131 1.9e-48 196.4 183 58.5
COL.COLO4_19452 Corchorus olitorius HOM05D007229 ORTHO05D009131 5.4e-48 194.9 182 56.6
Psat5g069080 Pisum sativum HOM05D007229 ORTHO05D009131 5.4e-48 194.9 181 58.6
SalBow3G2298 Salvia bowleyana HOM05D007229 ORTHO05D009131 9.2e-48 194.1 144 68.8
Os01g0823600 Oryza sativa ssp. japonica HOM05D007229 ORTHO05D009131 1.2e-47 193.7 185 57.3
Hund13463 Selenicereus undatus HOM05D007229 ORTHO05D009131 1.2e-47 193.7 187 58.3
TWI53G0143 Tripterygium wilfordii HOM05D007229 ORTHO05D009131 1.2e-47 193.7 181 58.6
Duzib114G0482 Durio zibethinus HOM05D007229 ORTHO05D009131 2.0e-47 193.0 183 56.8
Glyma.04G221700 Glycine max HOM05D007229 ORTHO05D009131 2.0e-47 193.0 183 58.5
Lj1A965T45 Lonicera japonica HOM05D007229 ORTHO05D009131 2.0e-47 193.0 188 56.4
PGSC0003DMG400024310 Solanum tuberosum HOM05D007229 ORTHO05D009131 2.0e-47 193.0 189 57.7
MELO3C020131.2 Cucumis melo HOM05D007229 ORTHO05D009131 2.7e-47 192.6 144 63.2
DCAR_019811 Daucus carota HOM05D007229 ORTHO05D009131 3.5e-47 192.2 127 74.0
Peaxi162Scf00739g00125 Petunia axillaris HOM05D000154 ORTHO05D000092 3.5e-47 192.2 194 61.9
EL10Ac2g04250 Beta vulgaris HOM05D007229 ORTHO05D009131 4.6e-47 191.8 198 54.0
Sopen06g015630 Solanum pennellii HOM05D007229 ORTHO05D009131 4.6e-47 191.8 189 57.1
TPR.G16113 Trifolium pratense HOM05D007229 ORTHO05D009131 1.7e-46 189.9 181 56.9
Actinidia00993 Actinidia chinensis HOM05D007229 ORTHO05D009131 2.3e-46 189.5 144 65.3
arahy.Tifrunner.gnm1.ann1.I1HNZH Arachis hypogaea HOM05D007229 ORTHO05D009131 3.0e-46 189.1 185 55.7
CsaV3_5G010830 Cucumis sativus L. HOM05D007229 ORTHO05D009131 3.0e-46 189.1 144 61.8
Manes.07G139500 Manihot esculenta HOM05D007229 ORTHO05D009131 3.0e-46 189.1 186 55.9
Solyc06g050170.4 Solanum lycopersicum HOM05D000154 ORTHO05D000092 3.0e-46 189.1 190 56.8
SGA_v2.0_scaffold60G20901 Striga asiatica HOM05D007229 ORTHO05D009131 3.0e-46 189.1 181 55.2
Glyma.06G143700 Glycine max HOM05D007229 ORTHO05D009131 3.9e-46 188.7 184 56.5
Lj1g0022940 Lotus japonicus HOM05D007229 ORTHO05D009131 3.9e-46 188.7 188 55.9
VMungo1309G1820 Vigna mungo HOM05D007229 ORTHO05D009131 3.9e-46 188.7 183 57.9
arahy.Tifrunner.gnm1.ann1.B9ILCP Arachis hypogaea HOM05D007229 ORTHO05D009131 5.0e-46 188.3 185 57.3
Phvul.009G142501 Phaseolus vulgaris HOM05D007229 ORTHO05D009131 5.0e-46 188.3 183 57.9
AUR62012362 Chenopodium quinoa HOM05D007229 ORTHO05D009131 6.6e-46 188.0 188 60.6
Migut.F00594 Erythranthe guttata HOM05D007229 ORTHO05D009131 8.6e-46 187.6 126 73.0
Sed0026302 Sechium edule HOM05D007229 ORTHO05D009131 8.6e-46 187.6 126 69.0
Lalb_Chr11g0067841 Lupinus albus HOM05D007229 ORTHO05D009131 1.1e-45 187.2 182 57.1
Sabra19G0072100 Salix brachista HOM05D007229 ORTHO05D009131 1.1e-45 187.2 182 57.1
Sc14g0005610 Simmondsia chinensis HOM05D007229 ORTHO05D009131 1.5e-45 186.8 184 60.3
Manes.10G004800 Manihot esculenta HOM05D007229 ORTHO05D009131 1.9e-45 186.4 185 54.6
TAR369G0442 Trochodendron aralioides HOM05D007229 ORTHO05D009131 2.5e-45 186.0 188 54.3
CAN.G55.3 Capsicum annuum HOM05D007229 ORTHO05D009131 5.6e-45 184.9 126 72.2
Lsat_1_v5_gn_8_13541 Lactuca sativa HOM05D007229 ORTHO05D009131 5.6e-45 184.9 188 55.3
FvH4_7g25840 Fragaria vesca HOM05D007229 ORTHO05D009131 9.5e-45 184.1 148 62.8
FAN06G3440 Fragaria x ananassa HOM05D007229 ORTHO05D009131 9.5e-45 184.1 148 62.8
Cpa.g.sc19.82 Carica papaya HOM05D007229 ORTHO05D009131 1.6e-44 183.3 145 63.4
ClCG07G004950 Citrullus lanatus HOM05D007229 ORTHO05D009131 1.6e-44 183.3 151 59.6
ECA233G6234 Erigeron canadensis HOM05D007229 ORTHO05D009131 1.6e-44 183.3 186 53.8
Ciclev10033477m.g Citrus clementina HOM05D007229 ORTHO05D009131 2.1e-44 183.0 182 54.9
MD07G1232800 Malus domestica HOM05D007229 ORTHO05D009131 4.7e-44 181.8 184 52.2
Potri.019G056400 Populus trichocarpa HOM05D007229 ORTHO05D009131 4.7e-44 181.8 182 54.9
MBI15_g35108_MAGBIO Magnolia biondii HOM05D007229 ORTHO05D009131 1.8e-43 179.9 186 57.0
PSO339G1638 Papaver somniferum HOM05D007229 ORTHO05D009131 1.8e-43 179.9 170 57.6
HanXRQChr08g0222581 Helianthus annuus HOM05D007229 ORTHO05D009131 2.3e-43 179.5 187 55.6
RcHm_v2.0_Chr1g0372111 Rosa chinensis HOM05D007229 ORTHO05D009131 2.3e-43 179.5 148 64.2
CDE12G0285 Ceratophyllum demersum HOM05D007229 ORTHO05D009131 3.1e-43 179.1 183 52.5
HPP92_017919 Vanilla planifolia HOM05D007229 ORTHO05D009131 5.2e-43 178.3 150 58.7
PSO384G2154 Papaver somniferum HOM05D007229 ORTHO05D009131 8.9e-43 177.6 148 63.5
Prupe.2G263300 Prunus persica HOM05D007229 ORTHO05D009131 3.4e-42 175.6 126 68.3
CSS0032880 Camellia sinensis var. sinensis HOM05D007229 ORTHO05D009131 4.4e-42 175.3 188 56.4
Duzib106G0259 Durio zibethinus HOM05D007229 ORTHO05D009131 7.5e-42 174.5 144 62.5
Pp3c19_14460 Physcomitrium patens HOM05D007229 ORTHO05D009131 2.2e-41 172.9 125 69.6
AUR62031491 Chenopodium quinoa HOM05D000154 ORTHO05D000092 3.7e-41 172.2 121 70.2
Aqoxy2G00722 Aquilegia oxysepala HOM05D007229 ORTHO05D009131 7.1e-40 167.9 140 62.1
Mapoly0032s0114 Marchantia polymorpha HOM05D007229 ORTHO05D009131 2.7e-39 166.0 126 65.1
vmacro09972 Vaccinium macrocarpon HOM05D007229 ORTHO05D009131 5.1e-38 161.8 190 51.1
SEGI_31216 Sequoiadendron giganteum HOM05D007229 ORTHO05D009131 1.9e-37 159.8 125 63.2
ATR0681G125 Amborella trichopoda HOM05D007229 ORTHO05D009131 2.8e-36 156.0 162 52.5
SMO230G0076 Selaginella moellendorffii HOM05D007229 ORTHO05D009131 4.0e-35 152.1 127 60.6
Nitab4.5_0003695g0030 Nicotiana tabacum HOM05D007229 ORTHO05D009131 5.8e-34 148.3 185 48.6
Nitab4.5_0000109g0540 Nicotiana tabacum HOM05D000154 ORTHO05D009131 2.9e-33 146.0 167 50.9
SMO230G0102 Selaginella moellendorffii HOM05D007229 ORTHO05D009131 4.7e-28 128.6 105 61.0
SMO230G0113 Selaginella moellendorffii HOM05D007229 ORTHO05D009131 4.7e-28 128.6 105 61.0
Sed0009884 Sechium edule HOM05D007229 ORTHO05D009131 2.4e-24 116.3 145 46.2
MD01G1165900 Malus domestica HOM05D000154 ORTHO05D000092 1.9e-21 106.7 58 81.0
Nn2g10342 Nelumbo nucifera HOM05D000154 ORTHO05D000092 5.6e-21 105.1 68 72.1
Zm00001eb149430 Zea mays HOM05D007229 ORTHO05D009131 9.0e-19 97.8 124 50.0
SabraUnG0004000 Salix brachista HOM05D007229 ORTHO05D009131 7.6e-18 94.7 127 47.2
Ah.10g035980 Amaranthus hybridus HOM05D007229 ORTHO05D009131 1.7e-17 93.6 182 36.3
AagrBONN_evm.TU.Sc2ySwM_344.3614 Anthoceros agrestis HOM05D007229 ORTHO05D009131 2.7e-15 86.3 85 56.5
FAN01G1364 Fragaria x ananassa HOM05D007229 ORTHO05D009131 2.4e-11 73.2 118 40.7
Eucgr.J00129 Eucalyptus grandis HOM05D007229 ORTHO05D009131 1.6e-07 60.5 98 44.9


User provided reference genes

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