Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g07636 Brassica carinata HOM05D009749 ORTHO05D008033 3.7e-177 624.8 318 100.0
C06p23780 Brassica napus HOM05D009749 ORTHO05D008033 1.5e-149 533.1 322 85.4
BcaC08g44807 Brassica carinata HOM05D009749 ORTHO05D008033 2.1e-148 529.3 323 85.1
BolC6t37547H Brassica oleracea HOM05D009749 ORTHO05D008033 4.4e-146 521.5 332 82.8
A07p23080 Brassica napus HOM05D009749 ORTHO05D008033 3.3e-141 505.4 336 80.7
BraA07t29970Z Brassica rapa HOM05D009749 ORTHO05D008033 3.3e-141 505.4 336 80.7
Sp5g05780 Schrenkiella parvula HOM05D009749 ORTHO05D008033 2.2e-129 466.1 335 76.4
AL5G38190 Arabidopsis lyrata HOM05D009749 ORTHO05D008033 1.1e-123 447.2 337 75.4
A04p03560 Brassica napus HOM05D009749 ORTHO05D008033 4.0e-123 445.3 333 74.2
A09p49630 Brassica napus HOM05D009749 ORTHO05D008033 6.4e-121 438.0 334 72.8
BraA09t40416Z Brassica rapa HOM05D009749 ORTHO05D008033 6.4e-121 438.0 334 72.8
C04p35700 Brassica napus HOM05D009749 ORTHO05D008033 1.4e-120 436.8 333 73.3
C08p32040 Brassica napus HOM05D009749 ORTHO05D008033 1.2e-119 433.7 334 72.5
BcaC07g39991 Brassica carinata HOM05D009749 ORTHO05D008033 2.7e-119 432.6 334 72.2
BolC8t50822H Brassica oleracea HOM05D009749 ORTHO05D008033 2.7e-119 432.6 334 72.2
AT3G56810 Arabidopsis thaliana HOM05D009749 ORTHO05D008033 6.0e-119 431.4 339 72.9
BolC4t25234H Brassica oleracea HOM05D009749 ORTHO05D008033 1.0e-118 430.6 342 71.1
BcaB02g08346 Brassica carinata HOM05D009749 ORTHO05D008033 4.1e-112 408.7 329 71.4
BraA04t16080Z Brassica rapa HOM05D009749 ORTHO05D008033 5.4e-112 408.3 337 69.1
CARHR166960 Cardamine hirsuta HOM05D009749 ORTHO05D008033 2.1e-111 406.4 336 70.5
Carub.0005s2354 Capsella rubella HOM05D009749 ORTHO05D008033 1.6e-103 380.2 340 66.8
BcaC07g40118 Brassica carinata HOM05D009749 ORTHO05D008033 9.3e-96 354.4 346 63.9
BcaC02g09872 Brassica carinata HOM05D009749 ORTHO05D008033 9.0e-83 311.2 259 68.7
Thhalv10006250m.g Eutrema salsugineum HOM05D009749 ORTHO05D008033 8.5e-57 224.9 200 66.5
Thhalv10006450m.g Eutrema salsugineum HOM05D009749 ORTHO05D008033 1.1e-53 214.5 148 80.4
THA.LOC104803305 Tarenaya hassleriana HOM05D009749 ORTHO05D008033 4.1e-51 206.1 324 47.5
Aa31LG10G11650 Aethionema arabicum HOM05D009749 ORTHO05D008033 6.1e-39 165.6 141 68.1
Atru.chr8.918 Acer truncatum HOM05D007667 ORTHO05D008033 1.6e-15 87.8 336 28.6
Potri.016G024600 Populus trichocarpa HOM05D007667 ORTHO05D008033 3.4e-13 80.1 217 30.0
Sabra16G0030500 Salix brachista HOM05D007667 ORTHO05D008033 1.3e-12 78.2 239 28.5
Manes.08G067300 Manihot esculenta HOM05D007667 ORTHO05D008033 1.7e-12 77.8 256 29.3
RcHm_v2.0_Chr3g0495051 Rosa chinensis HOM05D007667 ORTHO05D008033 1.9e-11 74.3 246 26.8
PGR142G2092 Punica granatum HOM05D007667 ORTHO05D008033 3.2e-11 73.6 282 27.0
Medtr7g087970 Medicago truncatula HOM05D007667 ORTHO05D008033 4.1e-11 73.2 236 29.7
Ciclev10012153m.g Citrus clementina HOM05D007667 ORTHO05D008033 9.2e-11 72.0 189 28.6
Duzib128G0300 Durio zibethinus HOM05D007667 ORTHO05D008033 2.7e-10 70.5 218 31.2
Psat0s3111g0200 Pisum sativum HOM05D007667 ORTHO05D008033 2.7e-10 70.5 230 28.7
Sabra06G0019700 Salix brachista HOM05D007667 ORTHO05D008033 2.7e-10 70.5 189 31.2
Eucgr.K01702 Eucalyptus grandis HOM05D007667 ORTHO05D008033 2.3e-09 67.4 284 25.0
Glyma.03G003800 Glycine max HOM05D007667 ORTHO05D008033 2.3e-09 67.4 369 26.6
MD12G1111200 Malus domestica HOM05D007667 ORTHO05D008033 2.3e-09 67.4 315 27.0
Potri.006G026600 Populus trichocarpa HOM05D007667 ORTHO05D008033 2.3e-09 67.4 192 29.2
CSS0027019 Camellia sinensis var. sinensis HOM05D007667 ORTHO05D008033 3.0e-09 67.0 246 25.6
COL.COLO4_22773 Corchorus olitorius HOM05D007667 ORTHO05D008033 3.9e-09 66.6 312 26.3
Lalb_Chr14g0365211 Lupinus albus HOM05D007667 ORTHO05D008033 3.9e-09 66.6 185 27.0
arahy.Tifrunner.gnm1.ann1.B2YDCU Arachis hypogaea HOM05D007667 ORTHO05D008033 5.1e-09 66.2 306 27.8
CiPaw.09G161700 Carya illinoinensis HOM05D007667 ORTHO05D008033 8.6e-09 65.5 385 24.4
Glyma.19G122200 Glycine max HOM05D007667 ORTHO05D008033 8.6e-09 65.5 387 25.3
QL07p015392 Quercus lobata HOM05D007667 ORTHO05D008033 1.1e-08 65.1 226 23.9
GSVIVG01025830001 Vitis vinifera HOM05D007667 ORTHO05D008033 1.1e-08 65.1 260 24.6
SalBow6G3731 Salvia bowleyana HOM05D007667 ORTHO05D008033 1.5e-08 64.7 97 37.1
arahy.Tifrunner.gnm1.ann1.2JVN0K Arachis hypogaea HOM05D007667 ORTHO05D008033 1.9e-08 64.3 308 26.9
CANSAT01G1982 Cannabis sativa HOM05D007667 ORTHO05D008033 2.5e-08 63.9 255 23.9
DCAR_020622 Daucus carota HOM05D007667 ORTHO05D008033 3.3e-08 63.5 138 34.8
SalBow6G3030 Salvia bowleyana HOM05D007667 ORTHO05D008033 5.6e-08 62.8 96 36.5
SGA_v2.0_scaffold66G22329 Striga asiatica HOM05D007667 ORTHO05D008033 5.6e-08 62.8 246 23.6
Phvul.001G101500 Phaseolus vulgaris HOM05D007667 ORTHO05D008033 9.5e-08 62.0 377 24.9
Thecc.05G130400 Theobroma cacao HOM05D007667 ORTHO05D008033 9.5e-08 62.0 322 25.2
Haze_20347 Corylus avellana HOM05D007667 ORTHO05D008033 1.2e-07 61.6 228 24.6
Cfa019904 Carpinus fangiana HOM05D007667 ORTHO05D008033 2.1e-07 60.8 368 23.9
Lj1g0016001 Lotus japonicus HOM05D007667 ORTHO05D008033 2.1e-07 60.8 238 27.7
TPR.G23684 Trifolium pratense HOM05D007667 ORTHO05D008033 2.1e-07 60.8 183 29.5
Oeu041986.1 Olea europaea HOM05D007667 ORTHO05D008033 6.2e-07 59.3 280 25.7
Lalb_Chr22g0358161 Lupinus albus HOM05D007667 ORTHO05D008033 1.1e-06 58.5 46 54.3
Migut.J01575 Erythranthe guttata HOM05D007667 ORTHO05D008033 1.8e-06 57.8 269 25.3
MSTRG.6277 Avicennia marina HOM05D007667 ORTHO05D008033 4.0e-06 56.6 96 38.5
Oeu060747.1 Olea europaea HOM05D007667 ORTHO05D008033 4.0e-06 56.6 247 27.9
VMungo1383G2866 Vigna mungo HOM05D007667 ORTHO05D008033 6.8e-06 55.8 377 25.5
RhsimUnG0021200 Rhododendron simsii HOM05D007667 ORTHO05D008033 8.9e-06 55.5 266 26.7


User provided reference genes

Program Settings