Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g07622 Brassica carinata HOM05D001925 ORTHO05D005701 8.1e-302 1039.6 536 100.0
BcaB02g07621 Brassica carinata HOM05D001925 ORTHO05D005701 1.7e-288 995.3 529 97.7
BcaC08g44822 Brassica carinata HOM05D001925 ORTHO05D005701 1.3e-280 969.1 529 93.8
C06p24120 Brassica napus HOM05D001925 ORTHO05D005701 3.3e-279 964.5 529 93.4
BolC6t37570H Brassica oleracea HOM05D001925 ORTHO05D005701 2.1e-278 961.8 529 93.2
BraA07t29988Z Brassica rapa HOM05D001925 ORTHO05D005701 4.8e-278 960.7 529 93.0
A07p23240 Brassica napus HOM05D001925 ORTHO05D005701 1.4e-277 959.1 529 93.2
Sp5g05460 Schrenkiella parvula HOM05D001925 ORTHO05D005701 4.3e-255 884.4 531 85.5
AL7G22330 Arabidopsis lyrata HOM05D001925 ORTHO05D005701 6.1e-249 864.0 536 81.5
AT4G29910 Arabidopsis thaliana HOM05D001925 ORTHO05D005701 2.6e-247 858.6 534 81.8
Thhalv10005869m.g Eutrema salsugineum HOM05D001925 ORTHO05D005701 5.3e-245 850.9 537 82.1
CARHR237820 Cardamine hirsuta HOM05D001925 ORTHO05D005701 1.3e-238 829.7 518 82.2
THA.LOC104825846 Tarenaya hassleriana HOM05D001925 ORTHO05D005701 2.0e-220 769.2 544 73.7
Aa31LG2G20640 Aethionema arabicum HOM05D001925 ORTHO05D005701 6.2e-209 731.1 533 71.5
Carub.0007s1073 Capsella rubella HOM05D001925 ORTHO05D005701 6.8e-192 674.5 411 84.4
CiPaw.01G062800 Carya illinoinensis HOM05D001925 ORTHO05D005701 5.6e-186 654.8 543 63.0
QL04p053597 Quercus lobata HOM05D001925 ORTHO05D005701 2.4e-184 649.4 537 62.4
Actinidia10039 Actinidia chinensis HOM05D001925 ORTHO05D005701 3.4e-183 645.6 545 62.2
Duzib138G1334 Durio zibethinus HOM05D001925 ORTHO05D005701 2.9e-182 642.5 538 61.0
Manes.05G033300 Manihot esculenta HOM05D001925 ORTHO05D005701 2.9e-182 642.5 542 62.0
Haze_15511 Corylus avellana HOM05D001925 ORTHO05D005701 5.4e-181 638.3 549 60.5
vmacro13268 Vaccinium macrocarpon HOM05D001925 ORTHO05D005701 5.4e-181 638.3 547 60.3
Cfa003907 Carpinus fangiana HOM05D001925 ORTHO05D005701 7.1e-181 637.9 547 61.2
Gohir.A11G089700 Gossypium hirsutum HOM05D001925 ORTHO05D005701 1.6e-180 636.7 539 61.2
CSS0009302 Camellia sinensis var. sinensis HOM05D001925 ORTHO05D005701 2.1e-180 636.3 546 61.4
CSS0022743 Camellia sinensis var. sinensis HOM05D001925 ORTHO05D005701 2.1e-180 636.3 546 61.4
Rhsim07G0013900 Rhododendron simsii HOM05D001925 ORTHO05D005701 4.6e-180 635.2 545 60.7
Gorai.007G100400 Gossypium raimondii HOM05D001925 ORTHO05D005701 6.0e-180 634.8 539 60.5
Lj6A572T62 Lonicera japonica HOM05D001925 ORTHO05D005701 7.8e-180 634.4 550 60.5
Potri.014G085900 Populus trichocarpa HOM05D001925 ORTHO05D005701 7.8e-180 634.4 542 62.2
GSVIVG01008477001 Vitis vinifera HOM05D001925 ORTHO05D005701 2.3e-179 632.9 536 61.0
CANSAT56G3724 Cannabis sativa HOM05D001925 ORTHO05D005701 3.0e-179 632.5 542 60.7
Sabra14G0062200 Salix brachista HOM05D001925 ORTHO05D005701 1.1e-178 630.6 542 62.0
Gohir.D11G094000 Gossypium hirsutum HOM05D001925 ORTHO05D005701 1.5e-178 630.2 539 60.3
Lj6A578T43 Lonicera japonica HOM05D001925 ORTHO05D005701 1.5e-178 630.2 550 59.8
COL.COLO4_12725 Corchorus olitorius HOM05D001925 ORTHO05D005701 7.3e-178 627.9 541 60.6
Cpa.g.sc11.17 Carica papaya HOM05D001925 ORTHO05D005701 9.6e-178 627.5 542 59.4
Thecc.01G357800 Theobroma cacao HOM05D001925 ORTHO05D005701 2.8e-177 625.9 540 60.4
Ciclev10019660m.g Citrus clementina HOM05D001925 ORTHO05D005701 3.1e-176 622.5 540 60.0
Atru.chr5.509 Acer truncatum HOM05D001925 ORTHO05D005701 5.3e-176 621.7 542 60.0
Nn6g33390 Nelumbo nucifera HOM05D001925 ORTHO05D005701 3.4e-175 619.0 548 59.7
TAR636G2317 Trochodendron aralioides HOM05D001925 ORTHO05D005701 4.5e-175 618.6 550 58.5
MD01G1065000 Malus domestica HOM05D001925 ORTHO05D005701 4.2e-173 612.1 540 57.4
TWI73G0882 Tripterygium wilfordii HOM05D001925 ORTHO05D005701 4.2e-173 612.1 533 59.3
Psat4g001160 Pisum sativum HOM05D001925 ORTHO05D005701 3.5e-172 609.0 544 58.1
Cc02_g38160 Coffea canephora HOM05D001925 ORTHO05D005701 1.3e-171 607.1 542 60.3
Peaxi162Scf00020g00723 Petunia axillaris HOM05D001925 ORTHO05D005701 1.8e-171 606.7 543 58.7
Migut.B01766 Erythranthe guttata HOM05D001925 ORTHO05D005701 3.9e-171 605.5 540 59.8
Medtr7g077840 Medicago truncatula HOM05D001925 ORTHO05D005701 3.9e-171 605.5 544 57.7
RcHm_v2.0_Chr2g0161261 Rosa chinensis HOM05D001925 ORTHO05D005701 5.1e-171 605.1 515 59.0
MELO3C021204.2 Cucumis melo HOM05D001925 ORTHO05D005701 1.5e-170 603.6 541 59.1
PGR004G0833 Punica granatum HOM05D001925 ORTHO05D005701 2.5e-170 602.8 545 57.8
arahy.Tifrunner.gnm1.ann1.69YTHK Arachis hypogaea HOM05D001925 ORTHO05D005701 1.6e-169 600.1 543 57.6
Sed0000605 Sechium edule HOM05D001925 ORTHO05D005701 3.6e-169 599.0 540 58.0
Eucgr.L01587 Eucalyptus grandis HOM05D001925 ORTHO05D005701 1.4e-168 597.0 546 57.5
ClCG06G003620 Citrullus lanatus HOM05D001925 ORTHO05D005701 1.8e-168 596.7 541 58.0
Lj1g0000866 Lotus japonicus HOM05D001925 ORTHO05D005701 1.8e-168 596.7 543 58.0
Carub.0002s1689 Capsella rubella HOM05D001925 ORTHO05D005701 2.4e-168 596.3 357 85.7
HanXRQChr04g0121151 Helianthus annuus HOM05D001925 ORTHO05D005701 3.1e-168 595.9 540 58.5
MBI04_g28752_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D005701 1.5e-167 593.6 537 57.5
Ca_07928_v3 Cicer arietinum L. HOM05D001925 ORTHO05D005701 2.6e-167 592.8 540 56.5
CAN.G78.90 Capsicum annuum HOM05D001925 ORTHO05D005701 4.5e-167 592.0 543 57.5
Oeu015817.1 Olea europaea HOM05D001925 ORTHO05D005701 5.8e-167 591.7 545 57.1
FvH4_7g14490 Fragaria vesca HOM05D001925 ORTHO05D005701 9.9e-167 590.9 516 58.9
SalBow3G0216 Salvia bowleyana HOM05D001925 ORTHO05D005701 9.9e-167 590.9 527 58.6
DCAR_007446 Daucus carota HOM05D001925 ORTHO05D005701 1.7e-166 590.1 539 57.3
RcHm_v2.0_Chr1g0355901 Rosa chinensis HOM05D001925 ORTHO05D005701 1.7e-166 590.1 516 58.7
ECA236G3836 Erigeron canadensis HOM05D001925 ORTHO05D005701 2.2e-166 589.7 532 58.8
Prupe.2G172000 Prunus persica HOM05D001925 ORTHO05D005701 2.4e-165 586.3 503 59.4
VMungo1383G1901 Vigna mungo HOM05D001925 ORTHO05D005701 5.5e-165 585.1 544 56.6
arahy.Tifrunner.gnm1.ann1.NC5V2N Arachis hypogaea HOM05D001925 ORTHO05D005701 7.1e-165 584.7 550 56.5
Nitab4.5_0000583g0200 Nicotiana tabacum HOM05D001925 ORTHO05D005701 3.5e-164 582.4 543 57.3
Glyma.18G234000 Glycine max HOM05D001925 ORTHO05D005701 4.6e-164 582.0 532 55.8
BcaC07g40027 Brassica carinata HOM05D001925 ORTHO05D005701 1.3e-163 580.5 453 70.6
SGA_v2.0_scaffold4G02302 Striga asiatica HOM05D001925 ORTHO05D005701 1.3e-163 580.5 525 58.3
arahy.Tifrunner.gnm1.ann1.9GVB5D Arachis hypogaea HOM05D001925 ORTHO05D005701 1.8e-163 580.1 549 55.4
Phvul.008G061800 Phaseolus vulgaris HOM05D001925 ORTHO05D005701 3.3e-162 575.9 544 56.2
Eucgr.D01236 Eucalyptus grandis HOM05D001925 ORTHO05D005701 3.7e-161 572.4 537 56.6
Lj7A511T78 Lonicera japonica HOM05D001925 ORTHO05D005701 2.4e-160 569.7 528 56.8
PGSC0003DMG400000174 Solanum tuberosum HOM05D001925 ORTHO05D005701 9.0e-160 567.8 543 56.2
Sopen01g038540 Solanum pennellii HOM05D001925 ORTHO05D005701 1.2e-159 567.4 543 56.0
Lsat_1_v5_gn_7_4881 Lactuca sativa HOM05D001925 ORTHO05D005701 1.0e-158 564.3 531 57.4
Solyc01g094760.3 Solanum lycopersicum HOM05D001925 ORTHO05D005701 6.5e-158 561.6 543 55.4
Lalb_Chr13g0304081 Lupinus albus HOM05D001925 ORTHO05D005701 1.9e-157 560.1 532 54.9
EL10Ac1g00402 Beta vulgaris HOM05D001925 ORTHO05D005701 3.2e-157 559.3 545 54.9
FAN03G1293 Fragaria x ananassa HOM05D001925 ORTHO05D005701 1.9e-154 550.1 516 56.4
FAN10G1478 Fragaria x ananassa HOM05D001925 ORTHO05D005701 1.9e-154 550.1 516 56.8
FAN06G1763 Fragaria x ananassa HOM05D001925 ORTHO05D005701 5.7e-154 548.5 516 56.4
FAN10G3665 Fragaria x ananassa HOM05D001925 ORTHO05D005701 5.7e-154 548.5 516 56.8
Hund16654 Selenicereus undatus HOM05D001925 ORTHO05D005701 7.4e-154 548.1 531 53.9
FAN06G3551 Fragaria x ananassa HOM05D001925 ORTHO05D005701 6.3e-153 545.0 516 56.2
Aqoxy2G04021 Aquilegia oxysepala HOM05D001925 ORTHO05D005701 9.0e-152 541.2 549 51.9
Nitab4.5_0006018g0050 Nicotiana tabacum HOM05D001925 ORTHO05D005701 9.0e-152 541.2 516 56.4
FAN01G0375 Fragaria x ananassa HOM05D001925 ORTHO05D005701 8.5e-150 534.6 517 55.5
TPR.G37845 Trifolium pratense HOM05D001925 ORTHO05D005701 8.5e-150 534.6 542 52.6
ATR0068G004 Amborella trichopoda HOM05D001925 ORTHO05D005701 9.3e-149 531.2 521 52.0
Ah.05g180520 Amaranthus hybridus HOM05D001925 ORTHO05D001453 1.8e-147 526.9 531 53.1
CDE08G0676 Ceratophyllum demersum HOM05D001925 ORTHO05D005701 3.0e-147 526.2 534 54.1
PSO384G0118 Papaver somniferum HOM05D001925 ORTHO05D005701 3.7e-145 519.2 502 55.8
Glyma.09G258700 Glycine max HOM05D001925 ORTHO05D005701 2.0e-143 513.5 544 50.6
AUR62004371 Chenopodium quinoa HOM05D001925 ORTHO05D005701 9.1e-136 488.0 550 48.4
Dinv43827 Davidia involucrata HOM05D001925 ORTHO05D005701 2.6e-135 486.5 414 58.7
AUR62022580 Chenopodium quinoa HOM05D001925 ORTHO05D005701 4.5e-135 485.7 552 49.1
Sc01g0003490 Simmondsia chinensis HOM05D001925 ORTHO05D005701 1.5e-125 454.1 424 56.1
CsaV3_6G000620 Cucumis sativus L. HOM05D001925 ORTHO05D005701 9.4e-125 451.4 417 57.1
Zm00001eb214490 Zea mays HOM05D001925 ORTHO05D005701 1.6e-124 450.7 537 47.3
Os03g0759500 Oryza sativa ssp. japonica HOM05D001925 ORTHO05D005701 5.7e-122 442.2 498 48.4
C08p32440 Brassica napus HOM05D001925 ORTHO05D005701 2.2e-121 440.3 497 53.5
BolC8t50859H Brassica oleracea HOM05D001925 ORTHO05D005701 6.3e-121 438.7 497 53.5
SEGI_03119 Sequoiadendron giganteum HOM05D001925 ORTHO05D005701 3.2e-109 399.8 573 40.0
PSO339G3045 Papaver somniferum HOM05D001925 ORTHO05D005701 3.4e-106 389.8 492 45.9
arahy.Tifrunner.gnm1.ann1.IR4EKV Arachis hypogaea HOM05D001925 ORTHO05D005701 9.2e-104 381.7 322 62.1
Oeu050467.2 Olea europaea HOM05D001925 ORTHO05D005701 5.9e-103 379.0 546 42.3
SMO147G0283 Selaginella moellendorffii HOM05D001925 ORTHO05D005701 2.0e-98 364.0 515 40.6
arahy.Tifrunner.gnm1.ann1.SID920 Arachis hypogaea HOM05D001925 ORTHO05D005701 8.3e-97 358.6 416 50.2
HPP92_019868 Vanilla planifolia HOM05D001925 ORTHO05D005701 1.3e-94 351.3 359 53.2
AagrBONN_evm.TU.Sc2ySwM_368.2511 Anthoceros agrestis HOM05D001925 ORTHO05D005701 3.9e-94 349.7 492 41.5
Pp3c17_13600 Physcomitrium patens HOM05D001925 ORTHO05D005701 7.0e-88 328.9 519 38.9
ECA236G4017 Erigeron canadensis HOM05D001925 ORTHO05D005701 1.7e-86 324.3 309 56.0
Mapoly0177s0008 Marchantia polymorpha HOM05D001925 ORTHO05D005701 1.1e-83 315.1 483 39.8
arahy.Tifrunner.gnm1.ann1.D25PMP Arachis hypogaea HOM05D001925 ORTHO05D005701 6.0e-79 299.3 423 42.8
MD07G1135400 Malus domestica HOM05D001925 ORTHO05D005701 2.4e-75 287.3 348 47.7
Potri.001G135975 Populus trichocarpa HOM05D001925 ORTHO05D005701 2.6e-74 283.9 263 55.1
TPR.G26686 Trifolium pratense HOM05D001925 ORTHO05D005701 6.2e-60 236.1 266 48.1
arahy.Tifrunner.gnm1.ann1.IM3547 Arachis hypogaea HOM05D001925 ORTHO05D005701 3.5e-55 220.3 203 56.7
arahy.Tifrunner.gnm1.ann1.FEJ64N Arachis hypogaea HOM05D001925 ORTHO05D005701 2.3e-54 217.6 210 54.3
BraA09t40455Z Brassica rapa HOM05D001925 ORTHO05D005701 3.3e-53 213.8 354 42.9
C06p24140 Brassica napus HOM05D001925 ORTHO05D005701 5.3e-51 206.5 113 93.8
Actinidia20895 Actinidia chinensis HOM05D001925 ORTHO05D005701 3.4e-50 203.8 167 57.5
BcaC08g44824 Brassica carinata HOM05D001925 ORTHO05D005701 8.4e-49 199.1 115 89.6
A09p50030 Brassica napus HOM05D001925 ORTHO05D005701 2.4e-35 154.5 108 74.1
A09p50040 Brassica napus HOM05D001925 ORTHO05D005701 2.6e-34 151.0 89 88.8
TPR.G16202 Trifolium pratense HOM05D001925 ORTHO05D005701 1.7e-33 148.3 126 61.1
MCO11G226 Micromonas commoda HOM05D001925 ORTHO05D005701 3.6e-31 140.6 600 24.7
FvH4_2g10060 Fragaria vesca HOM05D001925 ORTHO05D005701 4.6e-31 140.2 205 42.4
Dinv43826 Davidia involucrata HOM05D001925 ORTHO05D005701 6.1e-31 139.8 116 63.8
CBR_g58810 Chara braunii HOM05D001925 ORTHO05D005701 5.1e-30 136.7 548 27.7
Zm00001eb057980 Zea mays HOM05D001925 ORTHO05D005701 5.1e-30 136.7 438 28.5
FAN24G1219 Fragaria x ananassa HOM05D001925 ORTHO05D005701 1.5e-26 125.2 108 61.1
Thhalv10027287m.g Eutrema salsugineum HOM05D001925 ORTHO05D005701 2.5e-24 117.9 86 69.8
C09p49930 Brassica napus HOM05D001925 ORTHO05D039571 5.5e-24 116.7 125 61.6
FAN15G3430 Fragaria x ananassa HOM05D001925 ORTHO05D005701 1.8e-22 111.7 107 56.1
PRCOL_00005952 Prasinoderma coloniale HOM05D001925 ORTHO05D005701 2.3e-22 111.3 504 24.6
FvH4_2g10061 Fragaria vesca HOM05D001925 ORTHO05D005701 1.5e-21 108.6 100 58.0
arahy.Tifrunner.gnm1.ann1.ZHBQ27 Arachis hypogaea HOM05D002506 ORTHO05D002879 3.3e-21 107.5 91 61.5
BcaC07g40074 Brassica carinata HOM05D001925 ORTHO05D005701 1.5e-18 98.6 88 69.3
MBI04_g47116_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D005701 2.0e-13 81.6 155 34.8
BcaC07g40045 Brassica carinata HOM05D001925 ORTHO05D005701 2.2e-12 78.2 58 74.1
Cre07.g355200 Chlamydomonas reinhardtii HOM05D001925 ORTHO05D005701 8.5e-09 66.2 562 23.0


User provided reference genes

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