Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g07599 Brassica carinata HOM05D002914 ORTHO05D003196 1.3e-64 249.6 126 100.0
BcaC08g44849 Brassica carinata HOM05D002914 ORTHO05D003196 2.8e-51 205.3 127 85.8
Sp5g05100 Schrenkiella parvula HOM05D002914 ORTHO05D003196 6.8e-50 200.7 126 81.0
A07p23450 Brassica napus HOM05D002914 ORTHO05D003196 1.0e-45 186.8 126 79.4
C08p33030 Brassica napus HOM05D002914 ORTHO05D003196 3.3e-44 181.8 98 89.8
BcaB02g08314 Brassica carinata HOM05D002914 ORTHO05D003196 1.6e-43 179.5 98 88.8
Thhalv10006376m.g Eutrema salsugineum HOM05D002914 ORTHO05D003196 2.8e-43 178.7 130 75.4
BolC8t50903H Brassica oleracea HOM05D002914 ORTHO05D003196 6.2e-43 177.6 131 73.3
Carub.0005s2434 Capsella rubella HOM05D002914 ORTHO05D003196 6.2e-43 177.6 101 87.1
A09p50360 Brassica napus HOM05D002914 ORTHO05D003196 8.1e-43 177.2 131 72.5
BraA09t40488Z Brassica rapa HOM05D002914 ORTHO05D003196 8.1e-43 177.2 131 72.5
A04p03090 Brassica napus HOM05D002914 ORTHO05D003196 1.1e-42 176.8 114 80.7
BraA04t16032Z Brassica rapa HOM05D002914 ORTHO05D003196 1.1e-42 176.8 114 80.7
AL5G39080 Arabidopsis lyrata HOM05D002914 ORTHO05D003196 2.3e-42 175.6 127 74.8
AT3G57500 Arabidopsis thaliana HOM05D002914 ORTHO05D003196 2.6e-41 172.2 127 73.2
BcaC07g40375 Brassica carinata HOM05D002914 ORTHO05D003196 1.7e-40 169.5 131 73.3
BcaC02g09941 Brassica carinata HOM05D002914 ORTHO05D003196 3.5e-38 161.8 98 81.6
CARHR167710 Cardamine hirsuta HOM05D002914 ORTHO05D003196 4.6e-38 161.4 126 70.6
C04p34950 Brassica napus HOM05D002914 ORTHO05D003196 3.0e-37 158.7 98 80.6
BolC4t25049H Brassica oleracea HOM05D002914 ORTHO05D003196 3.0e-37 158.7 98 80.6
Dinv18053 Davidia involucrata HOM05D002914 ORTHO05D003196 6.4e-24 114.4 112 56.2
TAR623G0040 Trochodendron aralioides HOM05D002914 ORTHO05D003196 2.4e-23 112.5 120 55.0
Duzib093G1261 Durio zibethinus HOM05D002914 ORTHO05D003196 4.6e-22 108.2 123 49.6
Prupe.7G063700 Prunus persica HOM05D002914 ORTHO05D003196 2.3e-21 105.9 88 63.6
Thecc.05G158000 Theobroma cacao HOM05D002914 ORTHO05D003196 2.3e-21 105.9 120 52.5
Aqoxy2G00187 Aquilegia oxysepala HOM05D002914 ORTHO05D003196 3.0e-21 105.5 108 53.7
CSS0032433 Camellia sinensis var. sinensis HOM05D002914 ORTHO05D003196 3.9e-21 105.1 123 52.0
Manes.09G023600 Manihot esculenta HOM05D002914 ORTHO05D003196 6.6e-21 104.4 97 58.8
Ah.04g151670 Amaranthus hybridus HOM05D002914 ORTHO05D003196 1.1e-20 103.6 74 63.5
EL10Ac3g07073 Beta vulgaris HOM05D002914 ORTHO05D003196 3.3e-20 102.1 73 65.8
MD14G1070500 Malus domestica HOM05D002914 ORTHO05D003196 4.3e-20 101.7 121 54.5
Phvul.001G135000 Phaseolus vulgaris HOM05D002914 ORTHO05D003196 4.3e-20 101.7 100 55.0
Atru.chr1.1072 Acer truncatum HOM05D002914 ORTHO05D003196 5.6e-20 101.3 101 54.5
RcHm_v2.0_Chr3g0481701 Rosa chinensis HOM05D002914 ORTHO05D003196 5.6e-20 101.3 87 63.2
Nn2g15303 Nelumbo nucifera HOM05D002914 ORTHO05D003196 7.3e-20 100.9 113 53.1
Cpa.g.sc92.38 Carica papaya HOM05D002914 ORTHO05D003196 9.6e-20 100.5 115 51.3
CiPaw.09G037100 Carya illinoinensis HOM05D002914 ORTHO05D003196 1.3e-19 100.1 93 57.0
TWI74G1608 Tripterygium wilfordii HOM05D002914 ORTHO05D003196 1.3e-19 100.1 74 64.9
Gohir.D09G120100 Gossypium hirsutum HOM05D002914 ORTHO05D003196 1.6e-19 99.8 99 54.5
Cfa016832 Carpinus fangiana HOM05D002914 ORTHO05D003196 2.1e-19 99.4 85 61.2
Nn7g36239 Nelumbo nucifera HOM05D002914 ORTHO05D003196 2.1e-19 99.4 95 58.9
Potri.006G052500 Populus trichocarpa HOM05D002914 ORTHO05D003196 2.8e-19 99.0 114 50.9
Oeu000823.1 Olea europaea HOM05D002914 ORTHO05D003196 3.6e-19 98.6 98 51.0
THA.LOC104802149 Tarenaya hassleriana HOM05D002914 ORTHO05D003196 3.6e-19 98.6 86 64.0
COL.COLO4_28237 Corchorus olitorius HOM05D002914 ORTHO05D003196 4.8e-19 98.2 83 57.8
Gohir.A09G123100 Gossypium hirsutum HOM05D002914 ORTHO05D003196 4.8e-19 98.2 98 53.1
Gorai.006G137500 Gossypium raimondii HOM05D002914 ORTHO05D003196 4.8e-19 98.2 98 53.1
Solyc04g015540.1 Solanum lycopersicum HOM05D002914 ORTHO05D003196 4.8e-19 98.2 92 56.5
Medtr7g091830 Medicago truncatula HOM05D002914 ORTHO05D003196 8.1e-19 97.4 95 51.6
Nitab4.5_0005892g0010 Nicotiana tabacum HOM05D002914 ORTHO05D003196 8.1e-19 97.4 58 77.6
Peaxi162Scf00493g00035 Petunia axillaris HOM05D002914 ORTHO05D003196 8.1e-19 97.4 73 65.8
SGA_v2.0_scaffold105G30420 Striga asiatica HOM05D002914 ORTHO05D003196 8.1e-19 97.4 93 59.1
Manes.08G049900 Manihot esculenta HOM05D002914 ORTHO05D003196 1.8e-18 96.3 87 54.0
Hma1.2p1_1847F.1_g305210 Hydrangea macrophylla HOM05D002914 ORTHO05D003196 2.4e-18 95.9 84 61.9
Glyma.19G140500 Glycine max HOM05D002914 ORTHO05D003196 3.1e-18 95.5 66 65.2
VMungo1383G1568 Vigna mungo HOM05D002914 ORTHO05D003196 3.1e-18 95.5 66 65.2
Sopen04g007610 Solanum pennellii HOM05D002914 ORTHO05D003196 4.0e-18 95.1 68 67.6
CANSAT80G1635 Cannabis sativa HOM05D002914 ORTHO05D003196 9.0e-18 94.0 86 58.1
Sc13g0001830 Simmondsia chinensis HOM05D002914 ORTHO05D003196 9.0e-18 94.0 96 56.2
TPR.G27766 Trifolium pratense HOM05D002914 ORTHO05D003196 9.0e-18 94.0 96 50.0
Psat3g072240 Pisum sativum HOM05D002914 ORTHO05D003196 1.2e-17 93.6 84 51.2
Ciclev10006230m.g Citrus clementina HOM05D002914 ORTHO05D003196 1.5e-17 93.2 124 49.2
ATR0332G006 Amborella trichopoda HOM05D002914 ORTHO05D003196 2.0e-17 92.8 55 72.7
Lj1g0015891 Lotus japonicus HOM05D002914 ORTHO05D003196 2.6e-17 92.4 109 50.5
Lalb_Chr20g0110761 Lupinus albus HOM05D002914 ORTHO05D003196 2.6e-17 92.4 90 53.3
Os03g0696150 Oryza sativa ssp. japonica HOM05D002914 ORTHO05D003196 2.6e-17 92.4 90 53.3
PGSC0003DMG400027270 Solanum tuberosum HOM05D002914 ORTHO05D003196 3.4e-17 92.0 67 64.2
Ca_08467_v3 Cicer arietinum L. HOM05D002914 ORTHO05D003196 7.6e-17 90.9 94 50.0
Duzib128G0409 Durio zibethinus HOM05D002914 ORTHO05D003196 9.9e-17 90.5 116 48.3
Lsat_1_v5_gn_5_161660 Lactuca sativa HOM05D002914 ORTHO05D003196 9.9e-17 90.5 68 57.4
HanXRQChr10g0300121 Helianthus annuus HOM05D002914 ORTHO05D003196 3.8e-16 88.6 91 52.7
FvH4_6g23590 Fragaria vesca HOM05D002914 ORTHO05D003196 4.9e-16 88.2 89 52.8
QL07p000101 Quercus lobata HOM05D002914 ORTHO05D003196 4.9e-16 88.2 103 53.4
FAN09G0984 Fragaria x ananassa HOM05D002914 ORTHO05D003196 1.4e-15 86.7 89 52.8
Gohir.A01G132111 Gossypium hirsutum HOM05D002914 ORTHO05D003196 9.3e-15 84.0 79 54.4
Migut.K00083 Erythranthe guttata HOM05D002914 ORTHO05D003196 1.6e-14 83.2 77 62.3
Lsat_1_v5_gn_9_28661 Lactuca sativa HOM05D002914 ORTHO05D003196 2.7e-14 82.4 105 44.8
Gorai.002G147700 Gossypium raimondii HOM05D002914 ORTHO05D003196 3.5e-14 82.0 79 53.2
MBI02_g05666_MAGBIO Magnolia biondii HOM05D002914 ORTHO05D003196 4.6e-14 81.6 87 52.9
Sabra06G0036900 Salix brachista HOM05D002914 ORTHO05D003196 4.6e-14 81.6 73 57.5
Gohir.D01G121050 Gossypium hirsutum HOM05D002914 ORTHO05D003196 1.3e-13 80.1 79 51.9
Actinidia17240 Actinidia chinensis HOM05D002914 ORTHO05D003196 3.9e-13 78.6 119 42.0
Dinv42126 Davidia involucrata HOM05D002914 ORTHO05D003196 6.6e-13 77.8 93 45.2
DCAR_020485 Daucus carota HOM05D002914 ORTHO05D003196 8.7e-13 77.4 109 42.2
AUR62024432 Chenopodium quinoa HOM05D002914 ORTHO05D003196 1.1e-12 77.0 67 55.2
Aqoxy5G01394 Aquilegia oxysepala HOM05D002914 ORTHO05D003196 4.3e-12 75.1 85 42.4
ClCG04G003270 Citrullus lanatus HOM05D002914 ORTHO05D003196 4.3e-12 75.1 84 52.4
Hma1.2p1_0584F.1_g183120 Hydrangea macrophylla HOM05D002914 ORTHO05D003196 1.3e-11 73.6 101 42.6
MBI04_g44434_MAGBIO Magnolia biondii HOM05D002914 ORTHO05D003196 1.3e-11 73.6 36 83.3
Lalb_Chr16g0384551 Lupinus albus HOM05D002914 ORTHO05D003196 3.6e-11 72.0 94 40.4
MELO3C023115.2 Cucumis melo HOM05D002914 ORTHO05D003196 6.2e-11 71.2 92 46.7
CsaV3_4G011800 Cucumis sativus L. HOM05D002914 ORTHO05D003196 6.2e-11 71.2 112 41.1
SEGI_00607 Sequoiadendron giganteum HOM05D002914 ORTHO05D003196 6.2e-11 71.2 44 68.2
TAR625G1140 Trochodendron aralioides HOM05D002914 ORTHO05D003196 1.8e-10 69.7 62 46.8
Thecc.08G014700 Theobroma cacao HOM05D002914 ORTHO05D003196 2.4e-10 69.3 85 43.5
MELO3C028578.2 Cucumis melo HOM05D002914 ORTHO05D003196 4.0e-10 68.6 76 46.1
HPP92_023573 Vanilla planifolia HOM05D002914 ORTHO05D003196 4.0e-10 68.6 87 44.8
ClCG02G005720 Citrullus lanatus HOM05D002914 ORTHO05D003196 6.9e-10 67.8 76 46.1
Duzib248G0090 Durio zibethinus HOM05D002914 ORTHO05D003196 6.9e-10 67.8 76 42.1
Medtr4g086780 Medicago truncatula HOM05D002914 ORTHO05D003196 6.9e-10 67.8 55 49.1
Rhsim05G0080600 Rhododendron simsii HOM05D002914 ORTHO05D003196 1.2e-09 67.0 69 49.3
Glyma.04G036500 Glycine max HOM05D002914 ORTHO05D003196 1.5e-09 66.6 105 36.2
TWI31G1086 Tripterygium wilfordii HOM05D002914 ORTHO05D003196 1.5e-09 66.6 62 51.6
ECA247G2219 Erigeron canadensis HOM05D000031 ORTHO05D000003 2.6e-09 65.9 88 43.2
Hma1.2p1_1589F.1_g292395 Hydrangea macrophylla HOM05D002914 ORTHO05D003196 2.6e-09 65.9 93 43.0
Hma1.2p1_2598F.1_g325150 Hydrangea macrophylla HOM05D002914 ORTHO05D003196 2.6e-09 65.9 93 43.0
Sp4g07710 Schrenkiella parvula HOM05D002914 ORTHO05D003196 2.6e-09 65.9 85 37.6
Atru.chr5.2809 Acer truncatum HOM05D002914 ORTHO05D003196 3.4e-09 65.5 103 40.8
arahy.Tifrunner.gnm1.ann1.TRJ4SS Arachis hypogaea HOM05D002914 ORTHO05D003196 3.4e-09 65.5 36 77.8
Duzib052G1256 Durio zibethinus HOM05D002914 ORTHO05D003196 3.4e-09 65.5 86 41.9
Lj5P206T48 Lonicera japonica HOM05D002914 ORTHO05D003196 3.4e-09 65.5 103 40.8
CsaV3_7G008810 Cucumis sativus L. HOM05D002914 ORTHO05D003196 4.5e-09 65.1 101 40.6
Migut.B00310 Erythranthe guttata HOM05D002914 ORTHO05D003196 4.5e-09 65.1 57 50.9
Gorai.005G104900 Gossypium raimondii HOM05D002914 ORTHO05D003196 4.5e-09 65.1 73 42.5
Migut.J01766 Erythranthe guttata HOM05D002914 ORTHO05D003196 5.8e-09 64.7 80 41.2
Psat5g044840 Pisum sativum HOM05D002914 ORTHO05D003196 5.8e-09 64.7 100 37.0
arahy.Tifrunner.gnm1.ann1.HH3ECB Arachis hypogaea HOM05D002914 ORTHO05D003196 7.6e-09 64.3 102 38.2
Glyma.06G036600 Glycine max HOM05D002914 ORTHO05D003196 7.6e-09 64.3 105 37.1
Carub.0004s0669 Capsella rubella HOM05D002914 ORTHO05D003196 1.3e-08 63.5 86 34.9
Ca_15973_v3 Cicer arietinum L. HOM05D002914 ORTHO05D003196 1.3e-08 63.5 103 36.9
Gohir.D06G013700 Gossypium hirsutum HOM05D002914 ORTHO05D003196 1.3e-08 63.5 64 48.4
Atru.chr13.614 Acer truncatum HOM05D002914 ORTHO05D003196 1.7e-08 63.2 97 37.1
Gohir.D02G092940 Gossypium hirsutum HOM05D002914 ORTHO05D003196 2.2e-08 62.8 73 41.1
Sed0010504 Sechium edule HOM05D002914 ORTHO05D003196 2.2e-08 62.8 100 37.0
TAR376G1047 Trochodendron aralioides HOM05D002914 ORTHO05D003196 2.2e-08 62.8 57 47.4
Medtr3g101240 Medicago truncatula HOM05D002914 ORTHO05D003196 3.8e-08 62.0 100 35.0
RcHm_v2.0_Chr6g0259071 Rosa chinensis HOM05D002914 ORTHO05D003196 3.8e-08 62.0 92 41.3
Oeu003693.1 Olea europaea HOM05D002914 ORTHO05D003196 6.4e-08 61.2 57 45.6
Oeu010582.1 Olea europaea HOM05D002914 ORTHO05D003196 6.4e-08 61.2 57 45.6
Gohir.A06G015600 Gossypium hirsutum HOM05D002914 ORTHO05D003196 8.4e-08 60.8 54 50.0
Gorai.010G016300 Gossypium raimondii HOM05D002914 ORTHO05D003196 8.4e-08 60.8 54 50.0
Nitab4.5_0002673g0030 Nicotiana tabacum HOM05D002914 ORTHO05D003196 1.1e-07 60.5 124 33.1
Oeu003691.1 Olea europaea HOM05D002914 ORTHO05D003196 1.1e-07 60.5 75 41.3
DCAR_022064 Daucus carota HOM05D002914 ORTHO05D003196 1.4e-07 60.1 78 39.7
Lj1g0002449 Lotus japonicus HOM05D002914 ORTHO05D003196 1.4e-07 60.1 88 38.6
Lalb_Chr23g0266911 Lupinus albus HOM05D002914 ORTHO05D003196 1.4e-07 60.1 113 32.7
PSO675G1122 Papaver somniferum HOM05D000003 ORTHO05D001026 1.4e-07 60.1 74 43.2
Atru.ctg24.30 Acer truncatum HOM05D002914 ORTHO05D003196 1.9e-07 59.7 50 60.0
AL4G19370 Arabidopsis lyrata HOM05D002914 ORTHO05D003196 1.9e-07 59.7 106 32.1
Aqoxy6G00878 Aquilegia oxysepala HOM05D002914 ORTHO05D003196 2.4e-07 59.3 83 37.3
THA.LOC104803788 Tarenaya hassleriana HOM05D002914 ORTHO05D003196 2.4e-07 59.3 74 35.1
TAR628G0868 Trochodendron aralioides HOM05D002914 ORTHO05D003196 2.4e-07 59.3 85 37.6
CDE02G0277 Ceratophyllum demersum HOM05D002914 ORTHO05D003196 3.2e-07 58.9 114 36.8
CDE01G0545 Ceratophyllum demersum HOM05D000767 ORTHO05D003196 4.2e-07 58.5 68 44.1
Lalb_Chr05g0219001 Lupinus albus HOM05D002914 ORTHO05D003196 4.2e-07 58.5 61 47.5
TWI36G0119 Tripterygium wilfordii HOM05D002914 ORTHO05D003196 4.2e-07 58.5 105 35.2
Aa31LG5G9350 Aethionema arabicum HOM05D002914 ORTHO05D003196 5.5e-07 58.2 96 34.4
AT2G26520 Arabidopsis thaliana HOM05D002914 ORTHO05D003196 5.5e-07 58.2 76 34.2
Nitab4.5_0000876g0190 Nicotiana tabacum HOM05D002914 ORTHO05D003196 5.5e-07 58.2 106 33.0
Potri.014G035400 Populus trichocarpa HOM05D002914 ORTHO05D003196 5.5e-07 58.2 56 46.4
Zm00001eb216960 Zea mays HOM05D002914 ORTHO05D003196 5.5e-07 58.2 75 45.3
Gorai.013G040900 Gossypium raimondii HOM05D002914 ORTHO05D003196 7.1e-07 57.8 48 54.2
Nitab4.5_0002462g0040 Nicotiana tabacum HOM05D002914 ORTHO05D003196 7.1e-07 57.8 76 39.5
Potri.004G144400 Populus trichocarpa HOM05D002914 ORTHO05D003196 7.1e-07 57.8 88 34.1
FvH4_2g35030 Fragaria vesca HOM05D002914 ORTHO05D003196 9.3e-07 57.4 92 33.7
Gohir.D13G036200 Gossypium hirsutum HOM05D002914 ORTHO05D003196 9.3e-07 57.4 69 46.4
VMungo0251G3532 Vigna mungo HOM05D002914 ORTHO05D003196 9.3e-07 57.4 76 35.5
ECA236G0292 Erigeron canadensis HOM05D002914 ORTHO05D003196 1.2e-06 57.0 98 34.7
HanXRQChr04g0128331 Helianthus annuus HOM05D002914 ORTHO05D003196 1.2e-06 57.0 106 30.2
Sc15g0006440 Simmondsia chinensis HOM05D002914 ORTHO05D003196 1.2e-06 57.0 63 42.9
Gohir.A03G191200 Gossypium hirsutum HOM05D002914 ORTHO05D003196 1.6e-06 56.6 89 33.7
Nitab4.5_0000876g0210 Nicotiana tabacum HOM05D002914 ORTHO05D003196 2.1e-06 56.2 124 31.5
Oeu013680.1 Olea europaea HOM05D002914 ORTHO05D003196 2.7e-06 55.8 87 37.9
ATR0225G004 Amborella trichopoda HOM05D002914 ORTHO05D003196 3.5e-06 55.5 106 34.9
Nn1g05872 Nelumbo nucifera HOM05D002914 ORTHO05D003196 3.5e-06 55.5 36 61.1
SGA_v2.0_scaffold58G20610 Striga asiatica HOM05D002914 ORTHO05D003196 3.5e-06 55.5 84 38.1
Ah.05g168910 Amaranthus hybridus HOM05D002914 ORTHO05D003196 4.6e-06 55.1 82 35.4
arahy.Tifrunner.gnm1.ann1.2E3RSG Arachis hypogaea HOM05D002914 ORTHO05D003196 4.6e-06 55.1 97 34.0
Gohir.A13G037800 Gossypium hirsutum HOM05D002914 ORTHO05D003196 4.6e-06 55.1 53 52.8
Peaxi162Scf00016g00161 Petunia axillaris HOM05D002914 ORTHO05D003196 4.6e-06 55.1 54 42.6
Phvul.003G294100 Phaseolus vulgaris HOM05D002914 ORTHO05D003196 4.6e-06 55.1 91 33.0
TPR.G40737 Trifolium pratense HOM05D002914 ORTHO05D003196 4.6e-06 55.1 122 31.1
Cfa005429 Carpinus fangiana HOM05D002914 ORTHO05D003196 6.0e-06 54.7 105 33.3
FAN15G3578 Fragaria x ananassa HOM05D002914 ORTHO05D003196 6.0e-06 54.7 86 36.0
HanXRQChr16g0509571 Helianthus annuus HOM05D002914 ORTHO05D003196 6.0e-06 54.7 92 37.0
Solyc01g108330.2 Solanum lycopersicum HOM05D002914 ORTHO05D003196 6.0e-06 54.7 85 34.1
Sopen01g050550 Solanum pennellii HOM05D002914 ORTHO05D003196 6.0e-06 54.7 85 34.1
Thecc.02G096100 Theobroma cacao HOM05D002914 ORTHO05D003196 6.0e-06 54.7 53 49.1
Potri.009G106300 Populus trichocarpa HOM05D002914 ORTHO05D003196 7.9e-06 54.3 102 32.4
HPP92_003444 Vanilla planifolia HOM05D002914 ORTHO05D003196 7.9e-06 54.3 93 32.3


User provided reference genes

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