Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g07551 Brassica carinata HOM05D005245 ORTHO05D006388 0.0e+00 1317.4 809 100.0
BcaC08g44897 Brassica carinata HOM05D005245 ORTHO05D006388 0.0e+00 1076.2 817 81.0
C06p25110 Brassica napus HOM05D005245 ORTHO05D006388 0.0e+00 1075.1 817 80.8
BolC6t37670H Brassica oleracea HOM05D005245 ORTHO05D006388 1.1e-311 1073.2 817 80.7
A07p23880 Brassica napus HOM05D005245 ORTHO05D006388 5.5e-310 1067.4 818 82.3
BcaB02g07550 Brassica carinata HOM05D005245 ORTHO05D006388 1.5e-291 1006.1 653 96.0
BraA07t30041Z Brassica rapa HOM05D005245 ORTHO05D006388 2.6e-291 1005.4 813 76.1
Sp5g04610 Schrenkiella parvula HOM05D005245 ORTHO05D006388 3.4e-288 995.0 837 70.3
Thhalv10005785m.g Eutrema salsugineum HOM05D005245 ORTHO05D006388 4.1e-273 944.9 817 67.8
AL5G39800 Arabidopsis lyrata HOM05D005245 ORTHO05D006388 3.3e-254 882.1 843 64.4
Carub.0005s2496 Capsella rubella HOM05D005245 ORTHO05D006388 6.8e-244 847.8 841 61.4
AT3G58110 Arabidopsis thaliana HOM05D005245 ORTHO05D006388 4.4e-243 845.1 842 62.7
CARHR168460 Cardamine hirsuta HOM05D005245 ORTHO05D006388 2.7e-240 835.9 823 60.3
THA.LOC104822691 Tarenaya hassleriana HOM05D005245 ORTHO05D006388 3.7e-189 666.0 837 53.5
AL4G40790 Arabidopsis lyrata HOM05D005245 ORTHO05D006388 1.5e-161 574.3 695 53.4
CARHR137420 Cardamine hirsuta HOM05D005245 ORTHO05D006388 7.0e-156 555.4 701 48.9
AT2G42370 Arabidopsis thaliana HOM05D005245 ORTHO05D006388 2.7e-139 500.4 693 45.3
Thecc.01G241800 Theobroma cacao HOM05D005245 ORTHO05D006388 2.8e-120 437.2 820 39.5
Cpa.g.sc209.10 Carica papaya HOM05D005245 ORTHO05D006388 1.1e-116 425.2 713 46.6
Duzib264G0025 Durio zibethinus HOM05D005245 ORTHO05D006388 1.4e-116 424.9 815 41.2
Gohir.D10G112600 Gossypium hirsutum HOM05D005245 ORTHO05D006388 7.8e-115 419.1 818 40.5
Gorai.011G124400 Gossypium raimondii HOM05D005245 ORTHO05D006388 1.0e-114 418.7 818 40.5
Gohir.A10G153600 Gossypium hirsutum HOM05D005245 ORTHO05D006388 1.1e-113 415.2 818 40.5
TWI59G0121 Tripterygium wilfordii HOM05D005245 ORTHO05D006388 3.6e-112 410.2 727 39.8
Manes.13G138100 Manihot esculenta HOM05D005245 ORTHO05D006388 4.7e-112 409.8 699 41.1
Haze_13315 Corylus avellana HOM05D005245 ORTHO05D006388 6.4e-109 399.4 713 41.4
TWI23G1119 Tripterygium wilfordii HOM05D005245 ORTHO05D006388 1.0e-106 392.1 719 39.9
Cfa014695 Carpinus fangiana HOM05D005245 ORTHO05D006388 1.1e-105 388.7 777 42.5
Sabra19G0105000 Salix brachista HOM05D005245 ORTHO05D006388 1.9e-105 387.9 723 40.1
CiPaw.04G130500 Carya illinoinensis HOM05D005245 ORTHO05D006388 5.6e-105 386.3 764 44.9
QL08p043062 Quercus lobata HOM05D005245 ORTHO05D006388 8.1e-104 382.5 761 40.7
MD17G1128800 Malus domestica HOM05D005245 ORTHO05D006388 3.4e-102 377.1 758 40.1
Potri.013G119700 Populus trichocarpa HOM05D005245 ORTHO05D006388 4.4e-102 376.7 836 38.3
CSS0021355 Camellia sinensis var. sinensis HOM05D005245 ORTHO05D006388 9.9e-102 375.6 712 43.0
ClCG02G018020 Citrullus lanatus HOM05D005245 ORTHO05D006388 9.9e-102 375.6 713 41.4
Lj3g0023683 Lotus japonicus HOM05D005245 ORTHO05D006388 2.2e-101 374.4 722 45.8
Potri.019G091700 Populus trichocarpa HOM05D005245 ORTHO05D006388 1.6e-99 368.2 828 36.1
Prupe.8G044600 Prunus persica HOM05D005245 ORTHO05D006388 1.6e-99 368.2 711 42.1
Dinv03891 Davidia involucrata HOM05D005245 ORTHO05D006388 2.1e-99 367.9 645 42.2
Lj8C105T4 Lonicera japonica HOM05D005245 ORTHO05D006388 6.0e-99 366.3 707 38.2
CsaV3_6G015240 Cucumis sativus L. HOM05D005245 ORTHO05D006388 1.3e-98 365.2 818 37.3
TAR316G0002 Trochodendron aralioides HOM05D005245 ORTHO05D006388 2.5e-97 360.9 696 36.4
Hma1.2p1_0002F.1_g002540 Hydrangea macrophylla HOM05D005245 ORTHO05D006388 5.6e-97 359.8 843 36.5
PGR042G2390 Punica granatum HOM05D005245 ORTHO05D006388 5.6e-97 359.8 701 37.8
Ciclev10014152m.g Citrus clementina HOM05D005245 ORTHO05D006388 7.3e-97 359.4 763 37.7
Phvul.011G116900 Phaseolus vulgaris HOM05D005245 ORTHO05D006388 7.3e-97 359.4 826 39.3
VMungo1127G0185 Vigna mungo HOM05D005245 ORTHO05D006388 2.1e-96 357.8 829 38.6
arahy.Tifrunner.gnm1.ann1.BT5S0A Arachis hypogaea HOM05D005245 ORTHO05D006388 2.8e-96 357.5 707 44.1
arahy.Tifrunner.gnm1.ann1.MS8YUN Arachis hypogaea HOM05D005245 ORTHO05D006388 2.8e-96 357.5 711 41.8
Ca_18900_v3 Cicer arietinum L. HOM05D005245 ORTHO05D006388 2.4e-95 354.4 721 42.9
Sed0004663 Sechium edule HOM05D005245 ORTHO05D006388 6.9e-95 352.8 733 37.2
CANSAT64G0642 Cannabis sativa HOM05D005245 ORTHO05D006388 2.6e-94 350.9 798 38.0
TPR.G14943 Trifolium pratense HOM05D005245 ORTHO05D006388 7.6e-94 349.4 721 39.7
TAR626G0262 Trochodendron aralioides HOM05D005245 ORTHO05D006388 9.9e-94 349.0 684 35.8
MD09G1139300 Malus domestica HOM05D005245 ORTHO05D006388 3.8e-93 347.1 719 39.6
Eucgr.A01888 Eucalyptus grandis HOM05D005245 ORTHO05D006388 4.9e-93 346.7 742 38.8
GSVIVG01020660001 Vitis vinifera HOM05D005245 ORTHO05D006388 6.4e-93 346.3 666 36.5
RcHm_v2.0_Chr2g0128861 Rosa chinensis HOM05D005245 ORTHO05D006388 4.2e-92 343.6 736 42.8
Lalb_Chr19g0134981 Lupinus albus HOM05D005245 ORTHO05D006388 1.2e-91 342.0 694 41.2
Lalb_Chr01g0005921 Lupinus albus HOM05D005245 ORTHO05D006388 1.3e-90 338.6 711 39.4
FAN09G0613 Fragaria x ananassa HOM05D005245 ORTHO05D006388 1.9e-89 334.7 730 42.7
Atru.chr6.2836 Acer truncatum HOM05D005245 ORTHO05D006388 3.3e-89 334.0 771 42.8
Actinidia39337 Actinidia chinensis HOM05D005245 ORTHO05D006388 4.3e-89 333.6 761 41.8
BcaC08g44896 Brassica carinata HOM05D005245 ORTHO05D006388 4.3e-89 333.6 231 85.7
Sopen07g027400 Solanum pennellii HOM05D005245 ORTHO05D006388 4.8e-88 330.1 738 36.4
FvH4_6g27000 Fragaria vesca HOM05D005245 ORTHO05D006388 6.2e-88 329.7 729 42.5
Nitab4.5_0002629g0110 Nicotiana tabacum HOM05D005245 ORTHO05D006388 9.0e-87 325.9 696 35.5
Nn1g09000 Nelumbo nucifera HOM05D005245 ORTHO05D006388 1.2e-86 325.5 777 34.5
Actinidia30446 Actinidia chinensis HOM05D005245 ORTHO05D006388 1.5e-86 325.1 747 41.5
Peaxi162Scf00189g00017 Petunia axillaris HOM05D005245 ORTHO05D006388 2.6e-86 324.3 690 35.1
PGSC0003DMG400009404 Solanum tuberosum HOM05D005245 ORTHO05D006388 3.4e-86 323.9 728 36.4
RcHm_v2.0_Chr5g0053351 Rosa chinensis HOM05D005245 ORTHO05D006388 7.6e-86 322.8 740 41.1
Dinv19977 Davidia involucrata HOM05D005245 ORTHO05D006388 2.2e-85 321.2 715 37.5
Lalb_Chr03g0029811 Lupinus albus HOM05D005245 ORTHO05D006388 1.4e-84 318.5 722 37.4
Psat7g166560 Pisum sativum HOM05D005245 ORTHO05D006388 5.5e-84 316.6 811 34.8
FvH4_3g11260 Fragaria vesca HOM05D005245 ORTHO05D006388 2.7e-83 314.3 738 38.2
Migut.M00189 Erythranthe guttata HOM05D005245 ORTHO05D006388 3.0e-82 310.8 707 35.8
Nitab4.5_0006823g0030 Nicotiana tabacum HOM05D005245 ORTHO05D006388 1.9e-81 308.1 688 35.5
Medtr4g079510 Medicago truncatula HOM05D005245 ORTHO05D006388 3.7e-80 303.9 721 38.6
Rhsim04G0072600 Rhododendron simsii HOM05D005245 ORTHO05D006388 2.4e-79 301.2 827 38.8
FAN21G3056 Fragaria x ananassa HOM05D005245 ORTHO05D006388 4.0e-79 300.4 703 35.0
Oeu031086.1 Olea europaea HOM05D005245 ORTHO05D006388 1.5e-78 298.5 701 34.2
SalBow7G1067 Salvia bowleyana HOM05D005245 ORTHO05D006388 2.9e-77 294.3 706 40.4
SGA_v2.0_scaffold106G30663 Striga asiatica HOM05D005245 ORTHO05D006388 8.4e-77 292.7 693 35.6
AUR62038992 Chenopodium quinoa HOM05D005245 ORTHO05D006388 5.5e-76 290.0 719 33.5
MBI06_g25721_MAGBIO Magnolia biondii HOM05D005245 ORTHO05D006388 5.5e-76 290.0 694 33.0
CAN.G1543.11 Capsicum annuum HOM05D005245 ORTHO05D006388 3.5e-75 287.3 745 37.9
Sc12g0003330 Simmondsia chinensis HOM05D005245 ORTHO05D006388 3.5e-75 287.3 839 30.4
Solyc07g053440.4 Solanum lycopersicum HOM05D005245 ORTHO05D006388 2.3e-74 284.6 722 34.1
Oeu036088.3 Olea europaea HOM05D005245 ORTHO05D006388 1.5e-73 282.0 693 36.7
EL10Ac9g20856 Beta vulgaris HOM05D005245 ORTHO05D006388 3.3e-73 280.8 700 32.7
Oeu000569.1 Olea europaea HOM05D005245 ORTHO05D006388 1.4e-71 275.4 702 32.2
Hund00957 Selenicereus undatus HOM05D005245 ORTHO05D006388 1.4e-71 275.4 840 33.3
AUR62024070 Chenopodium quinoa HOM05D005245 ORTHO05D006388 4.1e-71 273.9 705 31.9
unitig_899.g15324 Utricularia gibba HOM05D005245 ORTHO05D006388 1.7e-69 268.5 696 33.3
Aqoxy1G02205 Aquilegia oxysepala HOM05D005245 ORTHO05D006388 1.1e-68 265.8 700 31.9
Lsat_1_v5_gn_8_137601 Lactuca sativa HOM05D005245 ORTHO05D006388 1.1e-68 265.8 726 33.7
Ah.01g003870 Amaranthus hybridus HOM05D005245 ORTHO05D006388 7.2e-68 263.1 746 34.5
PSO339G1987 Papaver somniferum HOM05D005245 ORTHO05D006388 7.9e-67 259.6 678 31.4
PSO384G4553 Papaver somniferum HOM05D005245 ORTHO05D006388 1.1e-65 255.8 701 31.8
CDE10G0023 Ceratophyllum demersum HOM05D005245 ORTHO05D006388 6.3e-64 250.0 671 30.0
SHI10497 Sapria himalayana HOM05D005245 ORTHO05D006388 6.3e-64 250.0 697 29.7
Sabra13G0101100 Salix brachista HOM05D005245 ORTHO05D006388 8.2e-64 249.6 672 35.6
HanXRQChr17g0554751 Helianthus annuus HOM05D005245 ORTHO05D006388 8.5e-61 239.6 824 35.4
PSO782G4194 Papaver somniferum HOM05D005245 ORTHO05D006388 2.7e-59 234.6 820 28.8
PSO063G4059 Papaver somniferum HOM05D005245 ORTHO05D006388 8.8e-58 229.6 829 27.6
Glyma.06G284801 Glycine max HOM05D005245 ORTHO05D006388 1.7e-56 225.3 200 54.0
COL.COLO4_10076 Corchorus olitorius HOM05D005245 ORTHO05D006388 1.5e-54 218.8 298 46.0
DCAR_025312 Daucus carota HOM05D005245 ORTHO05D006388 5.9e-54 216.9 971 31.3
HanXRQChr17g0560461 Helianthus annuus HOM05D005245 ORTHO05D006388 3.8e-53 214.2 656 35.5
ECA233G0823 Erigeron canadensis HOM05D005245 ORTHO05D006388 5.0e-53 213.8 726 29.5
HPP92_024035 Vanilla planifolia HOM05D005245 ORTHO05D006388 1.9e-52 211.8 698 33.7
DCAR_006629 Daucus carota HOM05D005245 ORTHO05D006388 4.2e-52 210.7 755 30.5
Lalb_Chr22g0356801 Lupinus albus HOM05D005245 ORTHO05D006388 1.4e-50 205.7 667 31.5
TAR627G0756 Trochodendron aralioides HOM05D005245 ORTHO05D006388 6.7e-50 203.4 631 28.1
ATR0602G272 Amborella trichopoda HOM05D005245 ORTHO05D006388 2.9e-45 188.0 705 27.8
COL.COLO4_23697 Corchorus olitorius HOM05D005245 ORTHO05D006388 5.0e-45 187.2 274 43.1
MELO3C019743.2 Cucumis melo HOM05D005245 ORTHO05D006388 2.7e-43 181.4 426 37.3
CDE10G0522 Ceratophyllum demersum HOM05D005245 ORTHO05D006388 1.8e-42 178.7 683 24.9
CsaV3_3G019350 Cucumis sativus L. HOM05D005245 ORTHO05D006388 3.5e-38 164.5 271 40.2
HPP92_005198 Vanilla planifolia HOM05D005245 ORTHO05D006388 2.9e-37 161.4 714 25.4
Glyma.12G121100 Glycine max HOM05D005245 ORTHO05D006388 2.7e-35 154.8 133 54.1
Cc02_g14370 Coffea canephora HOM05D005245 ORTHO05D006388 5.2e-34 150.6 218 39.4
THA.LOC104802250 Tarenaya hassleriana HOM05D005245 ORTHO05D006388 2.2e-32 145.2 160 53.1
SGA_v2.0_scaffold51G18645 Striga asiatica HOM05D005245 ORTHO05D006388 1.1e-28 132.9 133 54.1
CDE10G0045 Ceratophyllum demersum HOM05D005245 ORTHO05D006388 2.1e-27 128.6 151 42.4
Atru.chr3.860 Acer truncatum HOM05D005245 ORTHO05D006388 6.1e-27 127.1 233 37.3
Sabra13G0101200 Salix brachista HOM05D005245 ORTHO05D006388 9.2e-23 113.2 150 45.3
Cc05_g08020 Coffea canephora HOM05D005245 ORTHO05D006388 4.3e-20 104.4 418 31.1
Os06g0538200 Oryza sativa ssp. japonica HOM05D005245 ORTHO05D006388 6.1e-19 100.5 793 29.6
Zm00001eb204940 Zea mays HOM05D005245 ORTHO05D006388 1.5e-17 95.9 169 39.1
Zm00001eb238770 Zea mays HOM05D005245 ORTHO05D006388 1.7e-16 92.4 185 37.3
ECA233G3350 Erigeron canadensis HOM05D005245 ORTHO05D006388 8.3e-16 90.1 203 31.5
SGA_v2.0_scaffold51G18646 Striga asiatica HOM05D005245 ORTHO05D006388 9.2e-15 86.7 137 41.6
SEGI_35055 Sequoiadendron giganteum HOM05D005245 ORTHO05D006388 1.2e-14 86.3 199 29.1
Zm00001eb238760 Zea mays HOM05D005245 ORTHO05D006388 6.0e-14 84.0 185 35.7
RcHm_v2.0_Chr4g0423021 Rosa chinensis HOM05D005245 ORTHO05D006388 4.0e-10 71.2 75 52.0
unitig_62.g23335 Utricularia gibba HOM05D005245 ORTHO05D006388 7.5e-09 67.0 125 36.0


User provided reference genes

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