Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g07550 Brassica carinata HOM05D005245 ORTHO05D006388 0.0e+00 1081.2 661 100.0
BcaB02g07551 Brassica carinata HOM05D005245 ORTHO05D006388 9.4e-292 1006.5 653 96.0
C06p25110 Brassica napus HOM05D005245 ORTHO05D006388 2.8e-235 818.9 661 76.7
BcaC08g44897 Brassica carinata HOM05D005245 ORTHO05D006388 8.1e-235 817.4 661 76.9
BolC6t37670H Brassica oleracea HOM05D005245 ORTHO05D006388 1.1e-234 817.0 661 76.6
A07p23880 Brassica napus HOM05D005245 ORTHO05D006388 1.2e-233 813.5 662 78.7
BraA07t30041Z Brassica rapa HOM05D005245 ORTHO05D006388 2.1e-214 749.6 657 71.2
Sp5g04610 Schrenkiella parvula HOM05D005245 ORTHO05D006388 1.8e-210 736.5 689 64.6
Thhalv10005785m.g Eutrema salsugineum HOM05D005245 ORTHO05D006388 1.6e-203 713.4 690 62.5
AL5G39800 Arabidopsis lyrata HOM05D005245 ORTHO05D006388 1.0e-184 651.0 695 60.4
Carub.0005s2496 Capsella rubella HOM05D005245 ORTHO05D006388 3.3e-180 636.0 693 57.7
AT3G58110 Arabidopsis thaliana HOM05D005245 ORTHO05D006388 5.3e-178 628.6 693 58.9
CARHR168460 Cardamine hirsuta HOM05D005245 ORTHO05D006388 3.2e-175 619.4 677 56.4
THA.LOC104822691 Tarenaya hassleriana HOM05D005245 ORTHO05D006388 2.9e-144 516.5 694 52.6
AL4G40790 Arabidopsis lyrata HOM05D005245 ORTHO05D006388 2.8e-118 430.3 567 51.7
CARHR137420 Cardamine hirsuta HOM05D005245 ORTHO05D006388 1.4e-114 417.9 565 46.9
AT2G42370 Arabidopsis thaliana HOM05D005245 ORTHO05D006388 1.5e-100 371.3 562 43.4
BcaC08g44896 Brassica carinata HOM05D005245 ORTHO05D006388 3.5e-89 333.6 231 85.7
Cpa.g.sc209.10 Carica papaya HOM05D005245 ORTHO05D006388 1.1e-79 302.0 583 42.9
Thecc.01G241800 Theobroma cacao HOM05D005245 ORTHO05D006388 1.6e-78 298.1 685 34.3
Dinv03891 Davidia involucrata HOM05D005245 ORTHO05D006388 2.4e-77 294.3 569 38.0
TWI59G0121 Tripterygium wilfordii HOM05D005245 ORTHO05D006388 7.6e-76 289.3 584 36.3
Duzib264G0025 Durio zibethinus HOM05D005245 ORTHO05D006388 2.7e-73 280.8 672 36.8
Manes.13G138100 Manihot esculenta HOM05D005245 ORTHO05D006388 2.3e-72 277.7 570 36.0
Gohir.D10G112600 Gossypium hirsutum HOM05D005245 ORTHO05D006388 3.0e-72 277.3 683 35.6
Gorai.011G124400 Gossypium raimondii HOM05D005245 ORTHO05D006388 3.9e-72 276.9 683 35.6
Gohir.A10G153600 Gossypium hirsutum HOM05D005245 ORTHO05D006388 2.5e-71 274.2 683 35.6
TWI23G1119 Tripterygium wilfordii HOM05D005245 ORTHO05D006388 4.3e-71 273.5 585 36.1
Haze_13315 Corylus avellana HOM05D005245 ORTHO05D006388 1.3e-70 271.9 567 38.4
GSVIVG01020660001 Vitis vinifera HOM05D005245 ORTHO05D006388 4.1e-69 266.9 554 35.9
CSS0021355 Camellia sinensis var. sinensis HOM05D005245 ORTHO05D006388 4.5e-68 263.5 575 40.0
Sabra19G0105000 Salix brachista HOM05D005245 ORTHO05D006388 4.5e-68 263.5 593 35.4
Cfa014695 Carpinus fangiana HOM05D005245 ORTHO05D006388 7.6e-68 262.7 634 39.6
TAR316G0002 Trochodendron aralioides HOM05D005245 ORTHO05D006388 3.2e-66 257.3 563 33.9
Potri.013G119700 Populus trichocarpa HOM05D005245 ORTHO05D006388 3.6e-65 253.8 699 34.2
Hma1.2p1_0002F.1_g002540 Hydrangea macrophylla HOM05D005245 ORTHO05D006388 6.1e-65 253.1 697 33.0
Lj8C105T4 Lonicera japonica HOM05D005245 ORTHO05D006388 1.3e-64 251.9 570 33.9
CiPaw.04G130500 Carya illinoinensis HOM05D005245 ORTHO05D006388 3.9e-64 250.4 629 41.0
ClCG02G018020 Citrullus lanatus HOM05D005245 ORTHO05D006388 5.1e-64 250.0 575 37.9
arahy.Tifrunner.gnm1.ann1.BT5S0A Arachis hypogaea HOM05D005245 ORTHO05D006388 1.9e-63 248.1 574 41.1
arahy.Tifrunner.gnm1.ann1.MS8YUN Arachis hypogaea HOM05D005245 ORTHO05D006388 7.4e-63 246.1 578 38.2
Phvul.011G116900 Phaseolus vulgaris HOM05D005245 ORTHO05D006388 1.6e-62 245.0 677 35.9
Potri.019G091700 Populus trichocarpa HOM05D005245 ORTHO05D006388 1.6e-62 245.0 698 31.9
PGR042G2390 Punica granatum HOM05D005245 ORTHO05D006388 3.7e-62 243.8 571 33.5
VMungo1127G0185 Vigna mungo HOM05D005245 ORTHO05D006388 6.3e-62 243.0 676 35.2
Sabra13G0101100 Salix brachista HOM05D005245 ORTHO05D006388 8.2e-62 242.7 672 33.6
Lj3g0023683 Lotus japonicus HOM05D005245 ORTHO05D006388 5.3e-61 240.0 582 42.4
Ca_18900_v3 Cicer arietinum L. HOM05D005245 ORTHO05D006388 6.9e-61 239.6 571 39.4
TAR626G0262 Trochodendron aralioides HOM05D005245 ORTHO05D006388 6.9e-61 239.6 562 33.1
QL08p043062 Quercus lobata HOM05D005245 ORTHO05D006388 2.6e-60 237.7 624 36.5
CsaV3_6G015240 Cucumis sativus L. HOM05D005245 ORTHO05D006388 7.7e-60 236.1 674 32.9
MD17G1128800 Malus domestica HOM05D005245 ORTHO05D006388 2.2e-59 234.6 617 34.5
Eucgr.A01888 Eucalyptus grandis HOM05D005245 ORTHO05D006388 2.9e-59 234.2 589 35.0
Ciclev10014152m.g Citrus clementina HOM05D005245 ORTHO05D006388 8.5e-59 232.6 618 33.2
Sopen07g027400 Solanum pennellii HOM05D005245 ORTHO05D006388 8.5e-59 232.6 595 32.6
Peaxi162Scf00189g00017 Petunia axillaris HOM05D005245 ORTHO05D006388 1.1e-58 232.3 574 31.2
TPR.G14943 Trifolium pratense HOM05D005245 ORTHO05D006388 1.4e-58 231.9 574 35.7
Nitab4.5_0002629g0110 Nicotiana tabacum HOM05D005245 ORTHO05D006388 2.5e-58 231.1 561 32.1
Lalb_Chr19g0134981 Lupinus albus HOM05D005245 ORTHO05D006388 3.2e-58 230.7 551 38.7
Oeu031086.1 Olea europaea HOM05D005245 ORTHO05D006388 3.2e-58 230.7 556 32.9
Prupe.8G044600 Prunus persica HOM05D005245 ORTHO05D006388 9.4e-58 229.2 574 36.4
Actinidia39337 Actinidia chinensis HOM05D005245 ORTHO05D006388 1.0e-56 225.7 621 38.5
Glyma.06G284801 Glycine max HOM05D005245 ORTHO05D006388 1.4e-56 225.3 200 54.0
Lalb_Chr01g0005921 Lupinus albus HOM05D005245 ORTHO05D006388 3.9e-56 223.8 558 36.4
PGSC0003DMG400009404 Solanum tuberosum HOM05D005245 ORTHO05D006388 5.1e-56 223.4 585 32.6
FAN09G0613 Fragaria x ananassa HOM05D005245 ORTHO05D006388 1.1e-55 222.2 589 40.1
CANSAT64G0642 Cannabis sativa HOM05D005245 ORTHO05D006388 5.7e-55 219.9 661 34.0
AUR62038992 Chenopodium quinoa HOM05D005245 ORTHO05D006388 2.8e-54 217.6 569 31.8
Lalb_Chr03g0029811 Lupinus albus HOM05D005245 ORTHO05D006388 2.8e-54 217.6 565 35.2
Sed0004663 Sechium edule HOM05D005245 ORTHO05D006388 3.7e-54 217.2 588 33.8
FvH4_6g27000 Fragaria vesca HOM05D005245 ORTHO05D006388 4.8e-54 216.9 585 39.7
SHI10497 Sapria himalayana HOM05D005245 ORTHO05D006388 4.8e-54 216.9 195 53.8
Nn1g09000 Nelumbo nucifera HOM05D005245 ORTHO05D006388 6.3e-54 216.5 636 31.8
Hund00957 Selenicereus undatus HOM05D005245 ORTHO05D006388 1.4e-53 215.3 758 31.5
RcHm_v2.0_Chr2g0128861 Rosa chinensis HOM05D005245 ORTHO05D006388 5.3e-53 213.4 593 39.6
SalBow7G1067 Salvia bowleyana HOM05D005245 ORTHO05D006388 9.1e-53 212.6 563 38.9
Nitab4.5_0006823g0030 Nicotiana tabacum HOM05D005245 ORTHO05D006388 1.5e-52 211.8 556 31.5
EL10Ac9g20856 Beta vulgaris HOM05D005245 ORTHO05D006388 4.5e-52 210.3 581 31.2
MD09G1139300 Malus domestica HOM05D005245 ORTHO05D006388 5.9e-52 209.9 582 33.8
CAN.G1543.11 Capsicum annuum HOM05D005245 ORTHO05D006388 7.7e-52 209.5 206 53.4
Migut.M00189 Erythranthe guttata HOM05D005245 ORTHO05D006388 7.7e-52 209.5 566 33.6
Atru.chr6.2836 Acer truncatum HOM05D005245 ORTHO05D006388 1.0e-51 209.1 634 39.0
Medtr4g079510 Medicago truncatula HOM05D005245 ORTHO05D006388 6.5e-51 206.5 557 36.8
AUR62024070 Chenopodium quinoa HOM05D005245 ORTHO05D006388 8.5e-51 206.1 567 31.2
Psat7g166560 Pisum sativum HOM05D005245 ORTHO05D006388 4.2e-50 203.8 673 29.9
FvH4_3g11260 Fragaria vesca HOM05D005245 ORTHO05D006388 1.2e-49 202.2 602 34.2
Actinidia30446 Actinidia chinensis HOM05D005245 ORTHO05D006388 1.6e-49 201.8 609 38.8
Ah.01g003870 Amaranthus hybridus HOM05D005245 ORTHO05D006388 3.6e-49 200.7 596 33.9
Dinv19977 Davidia involucrata HOM05D005245 ORTHO05D006388 7.9e-49 199.5 559 32.6
RcHm_v2.0_Chr5g0053351 Rosa chinensis HOM05D005245 ORTHO05D006388 1.0e-48 199.1 605 37.2
Oeu036088.3 Olea europaea HOM05D005245 ORTHO05D006388 1.8e-48 198.4 548 35.4
Rhsim04G0072600 Rhododendron simsii HOM05D005245 ORTHO05D006388 3.9e-48 197.2 676 35.8
unitig_899.g15324 Utricularia gibba HOM05D005245 ORTHO05D006388 3.9e-48 197.2 566 30.4
Oeu000569.1 Olea europaea HOM05D005245 ORTHO05D006388 2.6e-47 194.5 572 29.9
SGA_v2.0_scaffold106G30663 Striga asiatica HOM05D005245 ORTHO05D006388 4.4e-47 193.7 573 31.1
CDE10G0023 Ceratophyllum demersum HOM05D005245 ORTHO05D006388 9.7e-47 192.6 206 48.1
Sc12g0003330 Simmondsia chinensis HOM05D005245 ORTHO05D006388 2.0e-44 184.9 693 27.8
FAN21G3056 Fragaria x ananassa HOM05D005245 ORTHO05D006388 7.7e-44 183.0 559 29.9
MBI06_g25721_MAGBIO Magnolia biondii HOM05D005245 ORTHO05D006388 2.2e-43 181.4 570 29.1
Lsat_1_v5_gn_8_137601 Lactuca sativa HOM05D005245 ORTHO05D006388 3.8e-43 180.6 576 30.4
PSO782G4194 Papaver somniferum HOM05D005245 ORTHO05D006388 5.0e-43 180.3 197 46.7
Aqoxy1G02205 Aquilegia oxysepala HOM05D005245 ORTHO05D006388 8.5e-43 179.5 550 28.9
PSO063G4059 Papaver somniferum HOM05D005245 ORTHO05D006388 2.5e-42 177.9 206 45.6
Solyc07g053440.4 Solanum lycopersicum HOM05D005245 ORTHO05D006388 3.6e-41 174.1 563 29.8
PSO384G4553 Papaver somniferum HOM05D005245 ORTHO05D006388 4.0e-40 170.6 545 28.1
Lalb_Chr22g0356801 Lupinus albus HOM05D005245 ORTHO05D006388 2.6e-39 167.9 209 45.9
PSO339G1987 Papaver somniferum HOM05D005245 ORTHO05D006388 2.8e-38 164.5 545 27.7
HanXRQChr17g0554751 Helianthus annuus HOM05D005245 ORTHO05D006388 8.2e-38 162.9 655 33.6
ATR0602G272 Amborella trichopoda HOM05D005245 ORTHO05D006388 3.1e-37 161.0 210 44.3
HPP92_024035 Vanilla planifolia HOM05D005245 ORTHO05D006388 3.1e-37 161.0 219 44.7
CDE10G0522 Ceratophyllum demersum HOM05D005245 ORTHO05D006388 7.0e-37 159.8 164 47.6
Glyma.12G121100 Glycine max HOM05D005245 ORTHO05D006388 2.2e-35 154.8 133 54.1
ECA233G0823 Erigeron canadensis HOM05D005245 ORTHO05D006388 3.2e-34 151.0 205 38.5
Cc02_g14370 Coffea canephora HOM05D005245 ORTHO05D006388 4.2e-34 150.6 218 39.4
HanXRQChr17g0560461 Helianthus annuus HOM05D005245 ORTHO05D006388 7.2e-34 149.8 573 31.2
HPP92_005198 Vanilla planifolia HOM05D005245 ORTHO05D006388 6.1e-33 146.7 236 38.1
THA.LOC104802250 Tarenaya hassleriana HOM05D005245 ORTHO05D006388 4.8e-30 137.1 160 52.5
DCAR_006629 Daucus carota HOM05D005245 ORTHO05D006388 5.4e-29 133.7 620 26.0
SGA_v2.0_scaffold51G18645 Striga asiatica HOM05D005245 ORTHO05D006388 9.1e-29 132.9 133 54.1
CDE10G0045 Ceratophyllum demersum HOM05D005245 ORTHO05D006388 1.7e-27 128.6 151 42.4
DCAR_025312 Daucus carota HOM05D005245 ORTHO05D006388 1.9e-26 125.2 821 28.7
TAR627G0756 Trochodendron aralioides HOM05D005245 ORTHO05D006388 9.5e-26 122.9 490 25.5
Cc05_g08020 Coffea canephora HOM05D005245 ORTHO05D006388 1.2e-20 105.9 418 28.9
Zm00001eb204940 Zea mays HOM05D005245 ORTHO05D006388 1.2e-17 95.9 169 39.1
Os06g0538200 Oryza sativa ssp. japonica HOM05D005245 ORTHO05D006388 1.0e-16 92.8 189 34.9
Zm00001eb238770 Zea mays HOM05D005245 ORTHO05D006388 1.4e-16 92.4 185 37.3
ECA233G3350 Erigeron canadensis HOM05D005245 ORTHO05D006388 6.8e-16 90.1 203 31.5
SEGI_35055 Sequoiadendron giganteum HOM05D005245 ORTHO05D006388 9.8e-15 86.3 199 29.1
Zm00001eb238760 Zea mays HOM05D005245 ORTHO05D006388 4.9e-14 84.0 185 35.7
COL.COLO4_23697 Corchorus olitorius HOM05D005245 ORTHO05D006388 9.5e-10 69.7 131 38.2
COL.COLO4_10076 Corchorus olitorius HOM05D005245 ORTHO05D006388 1.6e-09 68.9 159 38.4


User provided reference genes

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