Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g07544 Brassica carinata HOM05D004553 ORTHO05D005426 3.3e-157 558.5 321 100.0
Sp5g04540 Schrenkiella parvula HOM05D004553 ORTHO05D005426 1.7e-142 509.6 321 91.6
BcaC07g40268 Brassica carinata HOM05D004553 ORTHO05D005426 3.9e-142 508.4 316 94.0
BolC8t50975H Brassica oleracea HOM05D004553 ORTHO05D005426 1.1e-141 506.9 318 93.4
BcaC08g44904 Brassica carinata HOM05D004553 ORTHO05D005426 9.6e-141 503.8 319 91.8
A09p50940 Brassica napus HOM05D004553 ORTHO05D005426 1.6e-140 503.1 322 91.9
BraA09t40540Z Brassica rapa HOM05D004553 ORTHO05D005426 1.6e-140 503.1 322 91.9
BcaC07g40188 Brassica carinata HOM05D004553 ORTHO05D005426 8.1e-140 500.7 321 89.4
Thhalv10006107m.g Eutrema salsugineum HOM05D004553 ORTHO05D005426 6.9e-139 497.7 321 90.7
C08p33760 Brassica napus HOM05D004553 ORTHO05D005426 4.2e-136 488.4 317 92.1
BolC6t37683H Brassica oleracea HOM05D004553 ORTHO05D005426 9.3e-136 487.3 310 92.3
AT3G58180 Arabidopsis thaliana HOM05D004553 ORTHO05D005426 2.5e-133 479.2 321 85.7
Carub.0005s2503 Capsella rubella HOM05D004553 ORTHO05D005426 4.3e-133 478.4 321 86.3
Aa31LG10G12900 Aethionema arabicum HOM05D004553 ORTHO05D005426 1.3e-132 476.9 314 87.3
AL5G39880 Arabidopsis lyrata HOM05D004553 ORTHO05D005426 2.0e-130 469.5 321 86.9
C06p25240 Brassica napus HOM05D004553 ORTHO05D005426 2.0e-130 469.5 310 90.3
A07p23970 Brassica napus HOM05D004553 ORTHO05D005426 7.6e-130 467.6 312 90.4
BraA07t30048Z Brassica rapa HOM05D004553 ORTHO05D005426 7.9e-127 457.6 311 89.1
THA.LOC104802841 Tarenaya hassleriana HOM05D004553 ORTHO05D005426 9.9e-122 440.7 321 81.0
Duzib138G1605 Durio zibethinus HOM05D004553 ORTHO05D005426 2.1e-116 422.9 303 78.9
Cpa.g.sc50.47 Carica papaya HOM05D004553 ORTHO05D005426 6.2e-116 421.4 313 79.2
Gohir.A07G211100 Gossypium hirsutum HOM05D004553 ORTHO05D005426 1.3e-113 413.7 314 70.4
Gohir.D07G217100 Gossypium hirsutum HOM05D004553 ORTHO05D005426 1.7e-113 413.3 314 70.1
GSVIVG01028297001 Vitis vinifera HOM05D004553 ORTHO05D005426 1.9e-112 409.8 304 77.3
Gorai.001G251500 Gossypium raimondii HOM05D004553 ORTHO05D005426 5.5e-112 408.3 314 69.4
Cfa002394 Carpinus fangiana HOM05D004553 ORTHO05D005426 9.3e-112 407.5 303 71.6
Potri.002G041400 Populus trichocarpa HOM05D004553 ORTHO05D005426 9.3e-112 407.5 312 68.9
Ciclev10021217m.g Citrus clementina HOM05D004553 ORTHO05D005426 1.2e-111 407.1 301 71.8
CiPaw.03G261300 Carya illinoinensis HOM05D004553 ORTHO05D005426 3.5e-111 405.6 303 79.9
Haze_24589 Corylus avellana HOM05D004553 ORTHO05D005426 4.6e-111 405.2 303 71.6
Haze_24593 Corylus avellana HOM05D004553 ORTHO05D005426 4.6e-111 405.2 303 71.6
Potri.005G221700 Populus trichocarpa HOM05D004553 ORTHO05D005426 7.9e-111 404.4 303 70.3
Atru.chr5.1915 Acer truncatum HOM05D004553 ORTHO05D005426 1.8e-110 403.3 317 73.8
CANSAT21G2336 Cannabis sativa HOM05D004553 ORTHO05D005426 1.1e-109 400.6 318 71.7
QL09p037745 Quercus lobata HOM05D004553 ORTHO05D005426 3.3e-109 399.1 302 77.5
Manes.05G087500 Manihot esculenta HOM05D004553 ORTHO05D005426 4.3e-109 398.7 318 72.6
MD10G1187900 Malus domestica HOM05D004553 ORTHO05D005426 1.6e-108 396.7 302 71.5
PGR044G0761 Punica granatum HOM05D004553 ORTHO05D005426 1.6e-108 396.7 303 69.6
Phvul.001G159000 Phaseolus vulgaris HOM05D004553 ORTHO05D005426 3.7e-108 395.6 303 75.2
Glyma.03G161100 Glycine max HOM05D004553 ORTHO05D005426 4.8e-108 395.2 303 74.6
Aqoxy5G00280 Aquilegia oxysepala HOM05D004553 ORTHO05D005426 6.3e-108 394.8 306 73.5
Dinv34597 Davidia involucrata HOM05D004553 ORTHO05D005426 1.4e-107 393.7 313 67.7
HanXRQChr10g0281111 Helianthus annuus HOM05D004553 ORTHO05D005426 1.8e-107 393.3 300 69.3
MD05G1201100 Malus domestica HOM05D004553 ORTHO05D005426 1.8e-107 393.3 320 68.4
Prupe.8G227700 Prunus persica HOM05D004553 ORTHO05D005426 1.8e-107 393.3 320 68.1
MELO3C012740.2 Cucumis melo HOM05D004553 ORTHO05D005426 9.0e-107 391.0 306 68.0
Ca_02526_v3 Cicer arietinum L. HOM05D004553 ORTHO05D005426 1.2e-106 390.6 318 71.7
TPR.G5760 Trifolium pratense HOM05D004553 ORTHO05D005426 1.2e-106 390.6 307 69.4
Medtr7g096510 Medicago truncatula HOM05D004553 ORTHO05D005426 1.5e-106 390.2 303 69.3
TWI12G0019 Tripterygium wilfordii HOM05D004553 ORTHO05D005426 1.5e-106 390.2 292 78.4
TAR636G3311 Trochodendron aralioides HOM05D004553 ORTHO05D005426 1.5e-106 390.2 293 78.8
COL.COLO4_05596 Corchorus olitorius HOM05D004553 ORTHO05D005426 2.6e-106 389.4 305 68.5
Actinidia21228 Actinidia chinensis HOM05D004553 ORTHO05D005426 4.5e-106 388.7 302 68.5
FAN20G1146 Fragaria x ananassa HOM05D004553 ORTHO05D005426 5.9e-106 388.3 317 73.8
MBI17_g17502_MAGBIO Magnolia biondii HOM05D004553 ORTHO05D005426 1.0e-105 387.5 304 69.4
CsaV3_7G026990 Cucumis sativus L. HOM05D004553 ORTHO05D005426 1.3e-105 387.1 306 68.0
Hma1.2p1_0273F.1_g109950 Hydrangea macrophylla HOM05D004553 ORTHO05D005426 1.3e-105 387.1 302 69.2
FvH4_2g22010 Fragaria vesca HOM05D004553 ORTHO05D005426 1.7e-105 386.7 317 74.4
Psat3g059120 Pisum sativum HOM05D004553 ORTHO05D005426 1.7e-105 386.7 301 73.4
RcHm_v2.0_Chr6g0288871 Rosa chinensis HOM05D004553 ORTHO05D005426 2.9e-105 386.0 302 76.8
ClCG09G008080 Citrullus lanatus HOM05D004553 ORTHO05D005426 3.8e-105 385.6 303 68.0
Sed0015397 Sechium edule HOM05D004553 ORTHO05D005426 3.8e-105 385.6 320 65.0
Migut.D00406 Erythranthe guttata HOM05D004553 ORTHO05D005426 5.0e-105 385.2 302 68.5
Nn3g19599 Nelumbo nucifera HOM05D004553 ORTHO05D005426 5.0e-105 385.2 300 68.3
Nitab4.5_0000500g0290 Nicotiana tabacum HOM05D004553 ORTHO05D005426 8.5e-105 384.4 299 68.9
Actinidia23392 Actinidia chinensis HOM05D004553 ORTHO05D005426 1.4e-104 383.6 301 68.1
arahy.Tifrunner.gnm1.ann1.9FA7V6 Arachis hypogaea HOM05D004553 ORTHO05D005426 1.4e-104 383.6 305 70.5
AUR62024744 Chenopodium quinoa HOM05D004553 ORTHO05D005426 1.9e-104 383.3 300 68.7
VMungo1383G1775 Vigna mungo HOM05D004553 ORTHO05D005426 2.5e-104 382.9 294 74.8
Nitab4.5_0009451g0050 Nicotiana tabacum HOM05D004553 ORTHO05D005426 4.2e-104 382.1 301 68.8
TPR.G18834 Trifolium pratense HOM05D004553 ORTHO05D005426 4.2e-104 382.1 303 68.6
Hund09587 Selenicereus undatus HOM05D004553 ORTHO05D005426 7.2e-104 381.3 299 72.9
FAN24G1077 Fragaria x ananassa HOM05D004553 ORTHO05D005426 1.2e-103 380.6 324 72.8
AUR62011903 Chenopodium quinoa HOM05D004553 ORTHO05D005426 1.6e-103 380.2 300 68.0
TAR365G0062 Trochodendron aralioides HOM05D004553 ORTHO05D005426 1.6e-103 380.2 293 69.6
Ah.02g111810 Amaranthus hybridus HOM05D004553 ORTHO05D005426 2.1e-103 379.8 299 67.9
EL10Ac5g10427 Beta vulgaris HOM05D004553 ORTHO05D005426 2.7e-103 379.4 299 72.2
Sed0016387 Sechium edule HOM05D004553 ORTHO05D005426 2.7e-103 379.4 320 63.8
Nitab4.5_0001839g0070 Nicotiana tabacum HOM05D004553 ORTHO05D005426 3.6e-103 379.0 301 68.1
FAN15G2654 Fragaria x ananassa HOM05D004553 ORTHO05D005426 4.6e-103 378.6 324 72.2
Lalb_Chr20g0107851 Lupinus albus HOM05D004553 ORTHO05D005426 6.1e-103 378.3 304 71.7
CAN.G572.12 Capsicum annuum HOM05D004553 ORTHO05D005426 7.9e-103 377.9 301 67.8
FAN27G3448 Fragaria x ananassa HOM05D004553 ORTHO05D005426 1.0e-102 377.5 306 74.5
unitig_8.g3887 Utricularia gibba HOM05D004553 ORTHO05D005426 1.0e-102 377.5 317 73.5
Rhsim01G0266400 Rhododendron simsii HOM05D004553 ORTHO05D005426 1.4e-102 377.1 293 69.6
Sopen08g026340 Solanum pennellii HOM05D004553 ORTHO05D005426 1.4e-102 377.1 299 67.9
Solyc08g077830.1 Solanum lycopersicum HOM05D004553 ORTHO05D005426 1.8e-102 376.7 299 67.9
PGSC0003DMG400026216 Solanum tuberosum HOM05D004553 ORTHO05D005426 3.9e-102 375.6 299 68.2
Psat0s2295g0120 Pisum sativum HOM05D004553 ORTHO05D005426 8.8e-102 374.4 301 72.8
Sabra02G0033000 Salix brachista HOM05D004553 ORTHO05D005426 2.0e-101 373.2 311 64.3
arahy.Tifrunner.gnm1.ann1.6P10V3 Arachis hypogaea HOM05D004553 ORTHO05D005426 2.5e-101 372.9 321 67.9
MSTRG.3646 Avicennia marina HOM05D004553 ORTHO05D005426 1.7e-100 370.2 299 68.9
Cc03_g10870 Coffea canephora HOM05D004553 ORTHO05D005426 1.7e-100 370.2 301 66.4
arahy.Tifrunner.gnm1.ann1.59X69N Arachis hypogaea HOM05D004553 ORTHO05D005426 2.2e-100 369.8 305 70.2
Lsat_1_v5_gn_9_9101 Lactuca sativa HOM05D004553 ORTHO05D005426 2.2e-100 369.8 300 66.0
Peaxi162Scf00324g00032 Petunia axillaris HOM05D004553 ORTHO05D005426 3.7e-100 369.0 299 65.9
Eucgr.K03287 Eucalyptus grandis HOM05D004553 ORTHO05D005426 1.1e-99 367.5 303 68.0
arahy.Tifrunner.gnm1.ann1.1I5KFR Arachis hypogaea HOM05D004553 ORTHO05D005426 1.8e-99 366.7 305 68.5
SGA_v2.0_scaffold31G12652 Striga asiatica HOM05D004553 ORTHO05D005426 1.8e-99 366.7 312 66.3
PSO832G2284 Papaver somniferum HOM05D004553 ORTHO05D005426 6.9e-99 364.8 302 74.2
Oeu025823.1 Olea europaea HOM05D004553 ORTHO05D005426 3.4e-98 362.5 301 68.8
PSO675G7515 Papaver somniferum HOM05D004553 ORTHO05D005426 3.4e-98 362.5 302 65.9
ATR0794G102 Amborella trichopoda HOM05D004553 ORTHO05D005426 5.9e-98 361.7 301 68.8
PSO541G5588 Papaver somniferum HOM05D004553 ORTHO05D005426 2.2e-97 359.8 302 69.2
Lj1A269G34 Lonicera japonica HOM05D004553 ORTHO05D005426 1.6e-95 353.6 295 64.7
Os12g0626100 Oryza sativa ssp. japonica HOM05D004553 ORTHO05D005426 3.6e-95 352.4 318 60.7
DCAR_009311 Daucus carota HOM05D004553 ORTHO05D005426 3.9e-94 349.0 292 66.4
DCAR_012530 Daucus carota HOM05D004553 ORTHO05D005426 6.7e-94 348.2 301 64.1
vmacro03822 Vaccinium macrocarpon HOM05D004553 ORTHO05D005426 8.8e-94 347.8 317 61.8
SalBow6G2244 Salvia bowleyana HOM05D004553 ORTHO05D005426 4.8e-92 342.0 300 68.0
Os12g0163300 Oryza sativa ssp. japonica HOM05D004553 ORTHO05D005426 1.2e-90 337.4 311 60.8
TWI18G0975 Tripterygium wilfordii HOM05D004553 ORTHO05D005426 3.5e-90 335.9 297 63.0
Thecc.01G262600 Theobroma cacao HOM05D004553 ORTHO05D005426 4.8e-84 315.5 245 67.8
Zm00001eb259150 Zea mays HOM05D004553 ORTHO05D005426 4.1e-83 312.4 301 59.8
CARHR168560 Cardamine hirsuta HOM05D004553 ORTHO05D005426 7.0e-83 311.6 217 86.6
HPP92_007745 Vanilla planifolia HOM05D004553 ORTHO05D005426 1.3e-76 290.8 302 56.0
ECA247G2484 Erigeron canadensis HOM05D004553 ORTHO05D005426 4.8e-76 288.9 241 63.9
vmacro06125 Vaccinium macrocarpon HOM05D004553 ORTHO05D005426 1.1e-75 287.7 308 56.5
Sc05g0000780 Simmondsia chinensis HOM05D004553 ORTHO05D005426 1.8e-75 287.0 209 74.2
vmacro02641 Vaccinium macrocarpon HOM05D004553 ORTHO05D005426 1.8e-75 287.0 298 59.7
AagrBONN_evm.TU.Sc2ySwM_228.3863 Anthoceros agrestis HOM05D004553 ORTHO05D005426 6.3e-68 261.9 301 59.8
AagrBONN_evm.TU.Sc2ySwM_117.1472 Anthoceros agrestis HOM05D004553 ORTHO05D005426 4.1e-67 259.2 301 58.5
Pp3c11_17490 Physcomitrium patens HOM05D004553 ORTHO05D005426 1.4e-62 244.2 291 56.7
Glyma.19G162800 Glycine max HOM05D001448 ORTHO05D005781 8.3e-60 235.0 211 62.6
Mapoly0065s0014 Marchantia polymorpha HOM05D004553 ORTHO05D005426 1.4e-59 234.2 240 62.1
SMO304G0012 Selaginella moellendorffii HOM05D004553 ORTHO05D005426 2.5e-56 223.4 297 55.6
Cre10.g435550 Chlamydomonas reinhardtii HOM05D004553 ORTHO05D005426 7.3e-56 221.9 286 52.8
CBR_g46193 Chara braunii HOM05D004553 ORTHO05D005426 2.3e-46 190.3 316 42.7
HPP92_007825 Vanilla planifolia HOM05D004553 ORTHO05D005426 1.2e-45 188.0 259 47.5
Psat2g052960 Pisum sativum HOM05D004553 ORTHO05D005426 5.8e-45 185.7 199 54.8
PRCOL_00005471 Prasinoderma coloniale HOM05D004553 ORTHO05D005426 2.5e-40 170.2 299 44.5
Haze_27369 Corylus avellana HOM05D004553 ORTHO05D005426 6.2e-39 165.6 295 36.9
MCO15G119 Micromonas commoda HOM05D004553 ORTHO05D005426 3.1e-38 163.3 320 38.1
BcaC01g01031 Brassica carinata HOM05D004553 ORTHO05D005426 4.4e-37 159.5 177 57.6
C03p87400 Brassica napus HOM05D004553 ORTHO05D005426 4.4e-37 159.5 177 57.6
BolC3t21049H Brassica oleracea HOM05D004553 ORTHO05D005426 4.4e-37 159.5 177 57.6
Psat0s2087g0120 Pisum sativum HOM05D004553 ORTHO05D005426 3.5e-34 149.8 128 60.9
CDE04G1470 Ceratophyllum demersum HOM05D004553 ORTHO05D005426 1.0e-33 148.3 126 61.1
SEGI_33857 Sequoiadendron giganteum HOM05D004553 ORTHO05D005426 2.3e-33 147.1 130 63.1
Nn1g02691 Nelumbo nucifera HOM05D004553 ORTHO05D005426 5.2e-30 136.0 83 80.7
AT3G62530 Arabidopsis thaliana HOM05D004553 ORTHO05D005426 3.2e-27 126.7 163 42.3
SEGI_01794 Sequoiadendron giganteum HOM05D004553 ORTHO05D005426 2.7e-26 123.6 85 74.1
Oeu058648.1 Olea europaea HOM05D004553 ORTHO05D005426 5.1e-25 119.4 127 52.0
CARHR168550 Cardamine hirsuta HOM05D004553 ORTHO05D005426 1.3e-23 114.8 77 80.5
SHI26037 Sapria himalayana HOM05D004553 ORTHO05D000023 4.8e-23 112.8 164 43.3
CDE04G0333 Ceratophyllum demersum HOM05D004553 ORTHO05D005426 2.4e-22 110.5 85 70.6
Psat0s2088g0080 Pisum sativum HOM05D004553 ORTHO05D005426 4.4e-21 106.3 67 77.6
Oeu044898.1 Olea europaea HOM05D004553 ORTHO05D005426 2.9e-20 103.6 232 34.5
AagrBONN_evm.TU.Sc2ySwM_228.2479 Anthoceros agrestis HOM05D004553 ORTHO05D005426 2.1e-18 97.4 176 40.9
Oeu016862.1 Olea europaea HOM05D004553 ORTHO05D005426 1.5e-16 91.3 82 61.0
FvH4_2g19410 Fragaria vesca HOM05D004553 ORTHO05D005426 1.9e-16 90.9 65 70.8
CAN.G159.14 Capsicum annuum HOM05D004553 ORTHO05D005426 8.1e-15 85.5 71 60.6
CAN.G795.4 Capsicum annuum HOM05D004553 ORTHO05D005426 1.5e-13 81.3 71 56.3
Oeu041828.1 Olea europaea HOM05D004553 ORTHO05D005426 6.4e-12 75.9 78 47.4
Nitab4.5_0002915g0080 Nicotiana tabacum HOM05D000693 ORTHO05D001102 3.9e-09 66.6 103 39.8
CAN.G907.20 Capsicum annuum HOM05D004553 ORTHO05D005426 1.6e-07 61.2 40 70.0
AT3G43260 Arabidopsis thaliana HOM05D046300 ORTHO05D038666 2.4e-06 57.4 60 45.0
Nitab4.5_0002915g0090 Nicotiana tabacum HOM05D004553 ORTHO05D005426 3.1e-06 57.0 95 35.8


User provided reference genes

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