Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g07520 Brassica carinata HOM05D004880 ORTHO05D006130 4.6e-55 217.6 107 100.0
BcaC08g44920 Brassica carinata HOM05D004880 ORTHO05D006130 2.9e-49 198.4 101 96.0
C06p25460 Brassica napus HOM05D004880 ORTHO05D006130 2.9e-49 198.4 101 96.0
BolC6t37708H Brassica oleracea HOM05D004880 ORTHO05D006130 2.9e-49 198.4 101 96.0
BraA07t30059Z Brassica rapa HOM05D004880 ORTHO05D006130 1.9e-48 195.7 101 94.1
A07p24150 Brassica napus HOM05D004880 ORTHO05D006130 4.1e-48 194.5 101 93.1
Sp5g04380 Schrenkiella parvula HOM05D004880 ORTHO05D006130 8.6e-46 186.8 101 88.1
Thhalv10006516m.g Eutrema salsugineum HOM05D004880 ORTHO05D006130 1.5e-45 186.0 101 88.1
AT3G58490 Arabidopsis thaliana HOM05D004880 ORTHO05D006130 1.4e-43 179.5 101 86.1
Aa31LG10G13060 Aethionema arabicum HOM05D004880 ORTHO05D006130 3.1e-43 178.3 101 82.2
CARHR168890 Cardamine hirsuta HOM05D004880 ORTHO05D006130 3.1e-43 178.3 102 84.3
AL5G40260 Arabidopsis lyrata HOM05D004880 ORTHO05D006130 5.2e-43 177.6 101 85.1
Carub.0005s2524 Capsella rubella HOM05D004880 ORTHO05D006130 1.3e-41 172.9 102 81.4
Aa31LG1G24310 Aethionema arabicum HOM05D004880 ORTHO05D006130 2.1e-39 165.6 102 74.5
THA.LOC104802772 Tarenaya hassleriana HOM05D004880 ORTHO05D006130 3.5e-39 164.9 97 81.4
Potri.016G062100 Populus trichocarpa HOM05D004880 ORTHO05D006130 8.1e-36 153.7 97 74.2
PGR142G4320 Punica granatum HOM05D004880 ORTHO05D006130 1.1e-35 153.3 97 74.2
Atru.chr8.1200 Acer truncatum HOM05D004880 ORTHO05D006130 1.4e-35 152.9 97 73.2
Duzib128G0581 Durio zibethinus HOM05D004880 ORTHO05D006130 2.4e-35 152.1 99 71.7
Manes.08G040500 Manihot esculenta HOM05D004880 ORTHO05D006130 5.2e-35 151.0 97 71.1
CANSAT64G2835 Cannabis sativa HOM05D004880 ORTHO05D006130 9.0e-35 150.2 97 69.1
QL10p026397 Quercus lobata HOM05D004880 ORTHO05D006130 1.2e-34 149.8 97 72.2
CiPaw.09G027000 Carya illinoinensis HOM05D004880 ORTHO05D006130 2.6e-34 148.7 97 72.2
Haze_20052 Corylus avellana HOM05D004880 ORTHO05D006130 2.6e-34 148.7 97 71.1
CiPaw.10G024300 Carya illinoinensis HOM05D004880 ORTHO05D006130 3.4e-34 148.3 97 70.1
QL07p025081 Quercus lobata HOM05D004880 ORTHO05D006130 3.4e-34 148.3 97 71.1
QL07p025096 Quercus lobata HOM05D004880 ORTHO05D006130 3.4e-34 148.3 97 71.1
RcHm_v2.0_Chr3g0478791 Rosa chinensis HOM05D004880 ORTHO05D006130 3.4e-34 148.3 100 70.0
Sabra16G0064000 Salix brachista HOM05D004880 ORTHO05D006130 5.8e-34 147.5 97 71.1
Haze_20059 Corylus avellana HOM05D004880 ORTHO05D006130 7.6e-34 147.1 97 70.1
Potri.006G196200 Populus trichocarpa HOM05D004880 ORTHO05D006130 7.6e-34 147.1 97 71.1
Sabra06G0150800 Salix brachista HOM05D004880 ORTHO05D006130 7.6e-34 147.1 97 70.1
FvH4_6g21550 Fragaria vesca HOM05D004880 ORTHO05D006130 1.3e-33 146.4 100 68.0
FAN02G2738 Fragaria x ananassa HOM05D004880 ORTHO05D006130 1.3e-33 146.4 100 68.0
FAN14G3637 Fragaria x ananassa HOM05D004880 ORTHO05D006130 1.3e-33 146.4 100 68.0
Cpa.g.sc85.30 Carica papaya HOM05D004880 ORTHO05D006130 2.2e-33 145.6 100 66.0
ClCG04G001360 Citrullus lanatus HOM05D004880 ORTHO05D006130 2.2e-33 145.6 97 70.1
GSVIVG01033434001 Vitis vinifera HOM05D004880 ORTHO05D006130 2.2e-33 145.6 97 71.1
CSS0031126 Camellia sinensis var. sinensis HOM05D004880 ORTHO05D006130 2.9e-33 145.2 97 71.1
FAN05G5497 Fragaria x ananassa HOM05D004880 ORTHO05D006130 2.9e-33 145.2 100 67.0
Dinv24034 Davidia involucrata HOM05D004880 ORTHO05D006130 6.4e-33 144.1 97 67.0
CsaV3_4G031170 Cucumis sativus L. HOM05D004880 ORTHO05D006130 8.4e-33 143.7 104 65.4
ECA248G1283 Erigeron canadensis HOM05D004880 ORTHO05D006130 8.4e-33 143.7 98 69.4
FAN09G2092 Fragaria x ananassa HOM05D004880 ORTHO05D006130 8.4e-33 143.7 100 68.0
Lsat_1_v5_gn_1_60360 Lactuca sativa HOM05D004880 ORTHO05D006130 8.4e-33 143.7 104 66.3
Rhsim03G0002700 Rhododendron simsii HOM05D004880 ORTHO05D006130 8.4e-33 143.7 97 70.1
RhsimUnG0014100 Rhododendron simsii HOM05D004880 ORTHO05D006130 8.4e-33 143.7 97 70.1
COL.COLO4_29395 Corchorus olitorius HOM05D004880 ORTHO05D006130 1.1e-32 143.3 97 69.1
Duzib093G1906 Durio zibethinus HOM05D004880 ORTHO05D006130 1.1e-32 143.3 97 70.1
Lj1g0004925 Lotus japonicus HOM05D004880 ORTHO05D006130 1.1e-32 143.3 102 66.7
MD14G1051200 Malus domestica HOM05D004880 ORTHO05D006130 1.1e-32 143.3 97 68.0
MELO3C008990.2 Cucumis melo HOM05D004880 ORTHO05D006130 1.4e-32 142.9 97 68.0
Gohir.A09G129600 Gossypium hirsutum HOM05D004880 ORTHO05D006130 1.9e-32 142.5 100 67.0
Gohir.D09G125600 Gossypium hirsutum HOM05D004880 ORTHO05D006130 1.9e-32 142.5 100 67.0
Gorai.006G144600 Gossypium raimondii HOM05D004880 ORTHO05D006130 1.9e-32 142.5 100 67.0
HanXRQChr01g0024571 Helianthus annuus HOM05D004880 ORTHO05D006130 1.9e-32 142.5 104 66.3
Sed0002439 Sechium edule HOM05D004880 ORTHO05D006130 4.2e-32 141.4 96 72.9
Lj2A362T41 Lonicera japonica HOM05D004880 ORTHO05D006130 5.4e-32 141.0 97 69.1
Psat3g026000 Pisum sativum HOM05D004880 ORTHO05D006130 5.4e-32 141.0 101 65.3
TWI74G0273 Tripterygium wilfordii HOM05D004880 ORTHO05D006130 5.4e-32 141.0 100 64.0
Ca_09100_v3 Cicer arietinum L. HOM05D004880 ORTHO05D006130 7.1e-32 140.6 101 66.3
TAR633G2404 Trochodendron aralioides HOM05D004880 ORTHO05D006130 7.1e-32 140.6 97 69.1
vmacro12554 Vaccinium macrocarpon HOM05D004880 ORTHO05D006130 9.3e-32 140.2 106 67.0
arahy.Tifrunner.gnm1.ann1.4QW8I5 Arachis hypogaea HOM05D004880 ORTHO05D006130 1.6e-31 139.4 102 65.7
arahy.Tifrunner.gnm1.ann1.LHW1VF Arachis hypogaea HOM05D004880 ORTHO05D006130 1.6e-31 139.4 102 65.7
EL10Ac3g06851 Beta vulgaris HOM05D004880 ORTHO05D006130 1.6e-31 139.4 97 67.0
Prupe.7G084800 Prunus persica HOM05D004880 ORTHO05D006130 1.6e-31 139.4 97 67.0
DCAR_013674 Daucus carota HOM05D004880 ORTHO05D006130 2.1e-31 139.0 92 72.8
PSO339G2581 Papaver somniferum HOM05D004880 ORTHO05D006130 2.1e-31 139.0 97 66.0
PSO384G1868 Papaver somniferum HOM05D004880 ORTHO05D006130 2.1e-31 139.0 97 66.0
Actinidia22070 Actinidia chinensis HOM05D004880 ORTHO05D006130 2.7e-31 138.7 97 67.0
MD12G1052800 Malus domestica HOM05D004880 ORTHO05D006130 3.5e-31 138.3 97 64.9
Glyma.19G204500 Glycine max HOM05D004880 ORTHO05D006130 4.6e-31 137.9 101 64.4
Ciclev10011869m.g Citrus clementina HOM05D004880 ORTHO05D006130 6.0e-31 137.5 104 63.5
Eucgr.K01870 Eucalyptus grandis HOM05D004880 ORTHO05D006130 6.0e-31 137.5 97 69.1
TAR636G0255 Trochodendron aralioides HOM05D004880 ORTHO05D006130 7.8e-31 137.1 97 66.0
DCAR_017041 Daucus carota HOM05D004880 ORTHO05D006130 1.0e-30 136.7 104 64.4
Migut.J01871 Erythranthe guttata HOM05D004880 ORTHO05D006130 1.0e-30 136.7 97 64.9
Lj1A1134T63 Lonicera japonica HOM05D004880 ORTHO05D006130 1.3e-30 136.3 101 64.4
Manes.09G040000 Manihot esculenta HOM05D004880 ORTHO05D006130 1.3e-30 136.3 97 66.0
Thecc.05G178700 Theobroma cacao HOM05D004880 ORTHO05D006130 1.3e-30 136.3 97 66.0
TWI77G0767 Tripterygium wilfordii HOM05D004880 ORTHO05D006130 1.3e-30 136.3 100 63.0
Actinidia38600 Actinidia chinensis HOM05D004880 ORTHO05D006130 1.7e-30 136.0 97 67.0
Medtr7g107270 Medicago truncatula HOM05D004880 ORTHO05D006130 1.7e-30 136.0 100 63.0
TPR.G32306 Trifolium pratense HOM05D004880 ORTHO05D006130 1.7e-30 136.0 101 65.3
SHI30063 Sapria himalayana HOM05D004880 ORTHO05D006130 2.3e-30 135.6 97 66.0
HanXRQChr14g0438921 Helianthus annuus HOM05D004880 ORTHO05D006130 3.0e-30 135.2 104 65.4
SalBow1G7250 Salvia bowleyana HOM05D004880 ORTHO05D006130 3.0e-30 135.2 97 62.9
Sc13g0002510 Simmondsia chinensis HOM05D004880 ORTHO05D006130 3.0e-30 135.2 101 60.4
Glyma.03G207000 Glycine max HOM05D004880 ORTHO05D006130 5.1e-30 134.4 101 63.4
CAN.G8.1 Capsicum annuum HOM05D004880 ORTHO05D006130 6.6e-30 134.0 97 67.0
Nn7g35913 Nelumbo nucifera HOM05D004880 ORTHO05D006130 6.6e-30 134.0 97 63.9
Hund19219 Selenicereus undatus HOM05D004880 ORTHO05D006130 6.6e-30 134.0 97 66.0
Lsat_1_v5_gn_2_57080 Lactuca sativa HOM05D004880 ORTHO05D006130 1.1e-29 133.3 104 60.6
Nitab4.5_0005082g0030 Nicotiana tabacum HOM05D004880 ORTHO05D006130 1.1e-29 133.3 97 67.0
Ah.13g075550 Amaranthus hybridus HOM05D004880 ORTHO05D006130 1.5e-29 132.9 97 67.0
MSTRG.26074 Avicennia marina HOM05D004880 ORTHO05D006130 1.5e-29 132.9 104 63.5
Oeu057591.1 Olea europaea HOM05D004880 ORTHO05D006130 1.5e-29 132.9 97 66.0
PSO339G4595 Papaver somniferum HOM05D004880 ORTHO05D006130 1.9e-29 132.5 97 62.9
Aqoxy2G00483 Aquilegia oxysepala HOM05D004880 ORTHO05D006130 2.5e-29 132.1 97 63.9
Cc06_g23350 Coffea canephora HOM05D004880 ORTHO05D006130 3.3e-29 131.7 104 62.5
AUR62015294 Chenopodium quinoa HOM05D004880 ORTHO05D006130 4.3e-29 131.3 98 63.3
Lalb_Chr25g0287641 Lupinus albus HOM05D004880 ORTHO05D006130 4.3e-29 131.3 104 61.5
Phvul.001G200400 Phaseolus vulgaris HOM05D004880 ORTHO05D006130 4.3e-29 131.3 101 62.4
Lalb_Chr01g0017621 Lupinus albus HOM05D004880 ORTHO05D006130 7.3e-29 130.6 104 60.6
Oeu063855.2 Olea europaea HOM05D004880 ORTHO05D006130 7.3e-29 130.6 97 64.9
FvH4_1g29340 Fragaria vesca HOM05D004880 ORTHO05D006130 9.6e-29 130.2 83 71.1
Nitab4.5_0002532g0010 Nicotiana tabacum HOM05D004880 ORTHO05D006130 9.6e-29 130.2 97 66.0
PGSC0003DMG400001105 Solanum tuberosum HOM05D004880 ORTHO05D006130 1.6e-28 129.4 97 64.9
PSO384G4146 Papaver somniferum HOM05D004880 ORTHO05D006130 2.1e-28 129.0 104 61.5
SGA_v2.0_scaffold274G46503 Striga asiatica HOM05D004880 ORTHO05D006130 2.1e-28 129.0 97 61.9
VMungo1383G0203 Vigna mungo HOM05D004880 ORTHO05D006130 2.1e-28 129.0 101 61.4
SalBow6G2644 Salvia bowleyana HOM05D004880 ORTHO05D006130 4.8e-28 127.9 97 63.9
Solyc03g051970.3 Solanum lycopersicum HOM05D004880 ORTHO05D006130 1.4e-27 126.3 96 65.6
Sopen03g011420 Solanum pennellii HOM05D004880 ORTHO05D006130 1.4e-27 126.3 96 65.6
MBI04_g09734_MAGBIO Magnolia biondii HOM05D004880 ORTHO05D006130 7.6e-26 120.6 104 57.7
Zm00001eb272460 Zea mays HOM05D004880 ORTHO05D006130 7.6e-26 120.6 101 58.4
Zm00001eb061460 Zea mays HOM05D004880 ORTHO05D006130 1.7e-25 119.4 102 56.9
ATR0001G036 Amborella trichopoda HOM05D004880 ORTHO05D006130 4.9e-25 117.9 97 61.9
Os03g0805400 Oryza sativa ssp. japonica HOM05D004880 ORTHO05D006130 4.9e-25 117.9 102 55.9
HPP92_007945 Vanilla planifolia HOM05D004880 ORTHO05D006130 2.7e-23 112.1 97 56.7
Zm00001eb359710 Zea mays HOM05D004880 ORTHO05D006130 1.8e-22 109.4 95 57.9
ECA238G1506 Erigeron canadensis HOM05D004880 ORTHO05D001620 2.3e-22 109.0 73 69.9
HPP92_023567 Vanilla planifolia HOM05D004880 ORTHO05D006130 2.3e-22 109.0 97 54.6
SMO356G0032 Selaginella moellendorffii HOM05D004880 ORTHO05D006130 3.0e-22 108.6 105 53.3
SEGI_41601 Sequoiadendron giganteum HOM05D004880 ORTHO05D006130 5.1e-22 107.8 98 54.1
Mapoly0023s0042 Marchantia polymorpha HOM05D004880 ORTHO05D006130 6.7e-22 107.5 97 50.5
AagrBONN_evm.TU.Sc2ySwM_362.985 Anthoceros agrestis HOM05D004880 ORTHO05D006130 1.5e-21 106.3 97 54.6
HPP92_020366 Vanilla planifolia HOM05D004880 ORTHO05D006130 2.1e-20 102.4 97 51.5
Peaxi162Scf00463g00322 Petunia axillaris HOM05D004880 ORTHO05D006130 3.1e-19 98.6 80 61.2
CDE10G0990 Ceratophyllum demersum HOM05D004880 ORTHO05D006130 9.0e-19 97.1 88 55.7
Dinv16340 Davidia involucrata HOM05D004880 ORTHO05D006130 3.4e-18 95.1 52 82.7
Lalb_Chr20g0111071 Lupinus albus HOM05D004880 ORTHO05D006130 7.6e-18 94.0 51 82.4
TAR623G0618 Trochodendron aralioides HOM05D004880 ORTHO05D006130 8.4e-17 90.5 46 89.1
Pp3c11_15430 Physcomitrium patens HOM05D004880 ORTHO05D006130 7.1e-16 87.4 97 45.4
Pp3c2_26340 Physcomitrium patens HOM05D004880 ORTHO05D006130 7.1e-16 87.4 97 43.3
AUR62032743 Chenopodium quinoa HOM05D004880 ORTHO05D006130 1.2e-10 70.1 98 39.8
CBR_g27899 Chara braunii HOM05D004880 ORTHO05D006130 7.9e-07 57.4 80 36.2
Rhsim03G0002900 Rhododendron simsii HOM05D004880 ORTHO05D006130 1.0e-06 57.0 92 40.2


User provided reference genes

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