Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g07485 Brassica carinata HOM05D004223 ORTHO05D004792 3.6e-209 731.5 409 100.0
A07p24480 Brassica napus HOM05D000230 ORTHO05D000176 2.0e-159 566.2 403 83.6
BraA07t30092Z Brassica rapa HOM05D000230 ORTHO05D000176 9.9e-159 563.9 403 79.7
C06p25880 Brassica napus HOM05D000230 ORTHO05D000176 3.8e-158 562.0 403 82.6
BolC6t37750H Brassica oleracea HOM05D000230 ORTHO05D000176 3.8e-158 562.0 403 82.6
BcaC07g40242 Brassica carinata HOM05D004223 ORTHO05D004792 1.2e-151 540.4 403 79.7
Sp5g03900 Schrenkiella parvula HOM05D004223 ORTHO05D004792 7.6e-151 537.7 403 80.9
Thhalv10006050m.g Eutrema salsugineum HOM05D004223 ORTHO05D004792 3.2e-149 532.3 403 78.9
C08p34260 Brassica napus HOM05D004223 ORTHO05D004792 3.5e-148 528.9 404 77.7
BcaC08g44958 Brassica carinata HOM05D000230 ORTHO05D000176 1.8e-147 526.6 403 75.9
CARHR169510 Cardamine hirsuta HOM05D004223 ORTHO05D004792 1.9e-146 523.1 403 76.2
BraA09t40587Z Brassica rapa HOM05D004223 ORTHO05D004792 7.4e-146 521.2 417 75.3
Carub.0005s2585 Capsella rubella HOM05D004223 ORTHO05D004792 1.4e-144 516.9 403 76.9
AL5G40980 Arabidopsis lyrata HOM05D004223 ORTHO05D004792 6.9e-144 514.6 404 73.8
BolC8t51023H Brassica oleracea HOM05D004223 ORTHO05D004792 5.8e-143 511.5 438 71.7
AT3G59090 Arabidopsis thaliana HOM05D004223 ORTHO05D004792 6.5e-142 508.1 406 72.4
A09p51500 Brassica napus HOM05D004223 ORTHO05D004792 3.2e-141 505.8 413 74.3
BcaC07g40241 Brassica carinata HOM05D004223 ORTHO05D004792 6.7e-131 471.5 373 76.7
THA.LOC104803347 Tarenaya hassleriana HOM05D004223 ORTHO05D004792 9.1e-112 407.9 402 62.9
Aa31LG1G24730 Aethionema arabicum HOM05D004223 ORTHO05D004792 1.2e-108 397.5 392 62.0
Cfa023352 Carpinus fangiana HOM05D004223 ORTHO05D004792 1.4e-83 314.3 393 46.1
Ciclev10031935m.g Citrus clementina HOM05D004223 ORTHO05D004792 1.4e-83 314.3 396 48.0
Potri.005G203600 Populus trichocarpa HOM05D004223 ORTHO05D004792 3.7e-81 306.2 389 48.1
TWI59G0075 Tripterygium wilfordii HOM05D004223 ORTHO05D004792 1.1e-80 304.7 396 47.2
Nn3g20665 Nelumbo nucifera HOM05D004223 ORTHO05D004792 1.7e-78 297.4 390 43.1
Thecc.01G170900 Theobroma cacao HOM05D004223 ORTHO05D004792 2.3e-78 297.0 380 45.0
Duzib133G0675 Durio zibethinus HOM05D004223 ORTHO05D004792 1.5e-77 294.3 368 45.9
Dinv32277 Davidia involucrata HOM05D004223 ORTHO05D004792 2.1e-76 290.4 397 43.1
RcHm_v2.0_Chr2g0151741 Rosa chinensis HOM05D004223 ORTHO05D004792 2.1e-76 290.4 405 46.9
GSVIVG01021418001 Vitis vinifera HOM05D004223 ORTHO05D004792 2.1e-76 290.4 397 44.3
Potri.002G058500 Populus trichocarpa HOM05D004223 ORTHO05D004792 1.4e-75 287.7 389 47.6
MD17G1137300 Malus domestica HOM05D004223 ORTHO05D004792 2.3e-75 287.0 389 46.3
Aqoxy1G01765 Aquilegia oxysepala HOM05D004223 ORTHO05D004792 8.9e-75 285.0 390 41.5
FvH4_6g38510 Fragaria vesca HOM05D004223 ORTHO05D004792 2.6e-74 283.5 402 44.8
Ciclev10015725m.g Citrus clementina HOM05D004223 ORTHO05D004792 3.4e-74 283.1 398 42.5
MELO3C019676.2 Cucumis melo HOM05D004223 ORTHO05D004792 3.4e-74 283.1 396 44.2
Sed0004086 Sechium edule HOM05D004223 ORTHO05D004792 3.4e-74 283.1 387 45.7
ClCG02G018450 Citrullus lanatus HOM05D004223 ORTHO05D004792 1.3e-73 281.2 397 44.6
Actinidia19511 Actinidia chinensis HOM05D004223 ORTHO05D004792 1.7e-73 280.8 396 40.9
Gohir.A07G080900 Gossypium hirsutum HOM05D004223 ORTHO05D004792 3.7e-73 279.6 392 43.1
Sed0020532 Sechium edule HOM05D004223 ORTHO05D004792 8.3e-73 278.5 380 46.1
Gorai.001G092500 Gossypium raimondii HOM05D004223 ORTHO05D004792 1.1e-72 278.1 390 42.6
Solyc02g070860.4 Solanum lycopersicum HOM05D004223 ORTHO05D004792 1.1e-72 278.1 397 40.3
Cc09_g08890 Coffea canephora HOM05D004223 ORTHO05D004792 2.4e-72 276.9 401 40.9
Migut.M00929 Erythranthe guttata HOM05D004223 ORTHO05D004792 4.1e-72 276.2 394 40.9
Sopen02g019940 Solanum pennellii HOM05D004223 ORTHO05D004792 4.1e-72 276.2 397 40.1
Duzib235G1300 Durio zibethinus HOM05D004223 ORTHO05D004792 7.1e-72 275.4 400 41.0
Prupe.4G077600 Prunus persica HOM05D004223 ORTHO05D004792 7.1e-72 275.4 397 39.0
PGR042G1019 Punica granatum HOM05D004223 ORTHO05D004792 7.1e-72 275.4 389 47.3
Ca_06273_v3 Cicer arietinum L. HOM05D004223 ORTHO05D004792 1.6e-71 274.2 393 41.5
MD10G1264700 Malus domestica HOM05D004223 ORTHO05D004792 2.1e-71 273.9 391 40.9
Oeu019944.1 Olea europaea HOM05D004223 ORTHO05D004792 4.6e-71 272.7 399 40.9
TPR.G12676 Trifolium pratense HOM05D004223 ORTHO05D004792 4.6e-71 272.7 395 40.8
Medtr5g091370 Medicago truncatula HOM05D004223 ORTHO05D004792 1.0e-70 271.6 393 41.5
HanXRQChr04g0118281 Helianthus annuus HOM05D004223 ORTHO05D004792 3.0e-70 270.0 392 40.6
QL05p059118 Quercus lobata HOM05D004223 ORTHO05D004792 3.0e-70 270.0 389 44.0
QL08p044806 Quercus lobata HOM05D004223 ORTHO05D004792 3.0e-70 270.0 345 46.7
DCAR_027947 Daucus carota HOM05D004223 ORTHO05D004792 3.9e-70 269.6 397 39.8
PSO675G0042 Papaver somniferum HOM05D004223 ORTHO05D004792 6.6e-70 268.9 393 43.0
Gohir.D10G040000 Gossypium hirsutum HOM05D004223 ORTHO05D004792 1.1e-69 268.1 388 41.5
Gorai.011G042100 Gossypium raimondii HOM05D004223 ORTHO05D004792 1.1e-69 268.1 388 41.5
CsaV3_6G013790 Cucumis sativus L. HOM05D004223 ORTHO05D004792 1.5e-69 267.7 396 42.7
MD05G1287300 Malus domestica HOM05D004223 ORTHO05D004792 1.5e-69 267.7 394 39.1
PSO541G2658 Papaver somniferum HOM05D004223 ORTHO05D004792 1.5e-69 267.7 393 42.0
Thecc.06G153700 Theobroma cacao HOM05D004223 ORTHO05D004792 1.5e-69 267.7 397 42.8
Actinidia07682 Actinidia chinensis HOM05D004223 ORTHO05D004792 3.3e-69 266.5 389 41.1
CAN.G257.3 Capsicum annuum HOM05D004223 ORTHO05D004792 1.2e-68 264.6 397 39.0
FvH4_3g05960 Fragaria vesca HOM05D004223 ORTHO05D004792 4.7e-68 262.7 402 38.8
RcHm_v2.0_Chr5g0013511 Rosa chinensis HOM05D004223 ORTHO05D004792 1.4e-67 261.2 402 39.3
arahy.Tifrunner.gnm1.ann1.KB83YE Arachis hypogaea HOM05D004223 ORTHO05D004792 6.8e-67 258.8 388 39.7
CANSAT35G1433 Cannabis sativa HOM05D004223 ORTHO05D004792 6.8e-67 258.8 389 38.8
Migut.H01375 Erythranthe guttata HOM05D004223 ORTHO05D004792 6.8e-67 258.8 399 38.8
Gohir.A10G039200 Gossypium hirsutum HOM05D004223 ORTHO05D004792 8.9e-67 258.5 388 40.2
arahy.Tifrunner.gnm1.ann1.EM1NUG Arachis hypogaea HOM05D004223 ORTHO05D004792 3.4e-66 256.5 388 39.4
Manes.17G067700 Manihot esculenta HOM05D004223 ORTHO05D004792 3.4e-66 256.5 389 38.8
Prupe.3G175100 Prunus persica HOM05D004223 ORTHO05D004792 3.4e-66 256.5 397 44.6
Atru.chr6.2065 Acer truncatum HOM05D004223 ORTHO05D004792 9.9e-66 255.0 347 46.7
Sc05g0006430 Simmondsia chinensis HOM05D004223 ORTHO05D004792 9.9e-66 255.0 397 39.5
Glyma.05G129300 Glycine max HOM05D004223 ORTHO05D004792 1.3e-65 254.6 382 38.5
Glyma.08G084000 Glycine max HOM05D004223 ORTHO05D004792 2.9e-65 253.4 389 37.5
Lsat_1_v5_gn_7_32901 Lactuca sativa HOM05D004223 ORTHO05D004792 2.9e-65 253.4 365 41.6
PGR042G0116 Punica granatum HOM05D004223 ORTHO05D004792 4.9e-65 252.7 390 40.0
CiPaw.10G093300 Carya illinoinensis HOM05D004223 ORTHO05D004792 6.4e-65 252.3 391 38.6
Lalb_Chr12g0208891 Lupinus albus HOM05D004223 ORTHO05D004792 4.6e-63 246.1 394 37.6
Phvul.002G194500 Phaseolus vulgaris HOM05D004223 ORTHO05D004792 7.8e-63 245.4 389 38.0
Zm00001eb153380 Zea mays HOM05D004223 ORTHO05D004792 1.1e-61 241.5 388 38.4
Gohir.D07G086500 Gossypium hirsutum HOM05D004223 ORTHO05D004792 1.5e-61 241.1 390 39.2
Psat2g016680 Pisum sativum HOM05D004223 ORTHO05D004792 1.5e-61 241.1 334 42.2
EL10Ac8g19745 Beta vulgaris HOM05D004223 ORTHO05D004792 9.6e-61 238.4 423 35.2
ATR0585G108 Amborella trichopoda HOM05D004223 ORTHO05D004792 1.2e-60 238.0 385 36.9
Nitab4.5_0001655g0250 Nicotiana tabacum HOM05D004223 ORTHO05D004792 1.6e-60 237.7 489 32.7
ECA236G2733 Erigeron canadensis HOM05D004223 ORTHO05D004792 2.8e-60 236.9 346 41.3
Psat7g090920 Pisum sativum HOM05D004223 ORTHO05D004792 3.6e-60 236.5 388 37.1
Dinv30715 Davidia involucrata HOM05D004223 ORTHO05D004792 4.0e-59 233.0 341 41.3
Os01g0751300 Oryza sativa ssp. japonica HOM05D004223 ORTHO05D004792 2.0e-58 230.7 388 36.6
Lj4g0000090 Lotus japonicus HOM05D004223 ORTHO05D004792 3.4e-58 229.9 388 36.9
Medtr4g096650 Medicago truncatula HOM05D004223 ORTHO05D004792 3.4e-58 229.9 388 36.3
MELO3C002724.2 Cucumis melo HOM05D004223 ORTHO05D004792 3.8e-57 226.5 387 37.5
Rhsim02G0155900 Rhododendron simsii HOM05D004223 ORTHO05D004792 7.8e-55 218.8 331 40.5
VMungo0251G1974 Vigna mungo HOM05D004223 ORTHO05D004792 1.0e-54 218.4 364 35.7
Lsat_1_v5_gn_7_7501 Lactuca sativa HOM05D004223 ORTHO05D004792 2.3e-54 217.2 366 38.3
SalBow8G4695 Salvia bowleyana HOM05D004223 ORTHO05D004792 5.1e-54 216.1 440 33.6
SalBow8G5598 Salvia bowleyana HOM05D004223 ORTHO05D004792 5.1e-54 216.1 440 33.6
TPR.G4831 Trifolium pratense HOM05D004223 ORTHO05D004792 5.1e-54 216.1 389 35.7
HPP92_021479 Vanilla planifolia HOM05D004223 ORTHO05D004792 6.6e-54 215.7 391 36.6
Sed0009895 Sechium edule HOM05D004223 ORTHO05D004792 1.5e-53 214.5 392 37.0
FAN11G3669 Fragaria x ananassa HOM05D004223 ORTHO05D004792 2.5e-53 213.8 441 32.7
COL.COLO4_07169 Corchorus olitorius HOM05D000230 ORTHO05D000176 2.8e-52 210.3 324 40.4
Duzib160G0026 Durio zibethinus HOM05D004223 ORTHO05D004792 6.9e-51 205.7 390 35.9
FAN02G1578 Fragaria x ananassa HOM05D004223 ORTHO05D004792 2.6e-50 203.8 378 40.5
unitig_92.g28154 Utricularia gibba HOM05D004223 ORTHO05D004792 2.6e-50 203.8 382 34.3
TWI53G0125 Tripterygium wilfordii HOM05D004223 ORTHO05D004792 3.4e-50 203.4 375 36.0
TAR624G0476 Trochodendron aralioides HOM05D004223 ORTHO05D004792 7.6e-50 202.2 263 44.5
MSTRG.7472 Avicennia marina HOM05D004223 ORTHO05D004792 7.1e-48 195.7 311 36.3
Mapoly0056s0052 Marchantia polymorpha HOM05D004223 ORTHO05D004792 3.5e-47 193.4 380 37.9
Sabra02G0047600 Salix brachista HOM05D004223 ORTHO05D004792 7.9e-47 192.2 352 40.3
ClCG03G006980 Citrullus lanatus HOM05D004223 ORTHO05D004792 2.3e-46 190.7 459 31.8
Nitab4.5_0001040g0160 Nicotiana tabacum HOM05D004223 ORTHO05D004792 2.3e-46 190.7 448 31.0
CsaV3_1G032560 Cucumis sativus L. HOM05D004223 ORTHO05D004792 3.9e-46 189.9 336 36.3
CiPaw.09G126400 Carya illinoinensis HOM05D004223 ORTHO05D004792 1.6e-44 184.5 282 39.4
AUR62030243 Chenopodium quinoa HOM05D004223 ORTHO05D004792 8.1e-44 182.2 398 32.7
Oeu046871.2 Olea europaea HOM05D004223 ORTHO05D004792 3.1e-43 180.3 315 36.2
DCAR_003936 Daucus carota HOM05D004223 ORTHO05D004792 9.9e-42 175.3 306 38.9
Pp3c6_6380 Physcomitrium patens HOM05D004223 ORTHO05D004792 2.2e-41 174.1 358 31.8
SalBow7G0638 Salvia bowleyana HOM05D004223 ORTHO05D004792 2.2e-41 174.1 203 43.8
Pp3c25_8320 Physcomitrium patens HOM05D004223 ORTHO05D004792 3.8e-41 173.3 358 34.6
Peaxi162Scf00214g01114 Petunia axillaris HOM05D004223 ORTHO05D004792 6.0e-39 166.0 364 33.0
Pp3c5_22420 Physcomitrium patens HOM05D004223 ORTHO05D004792 1.0e-38 165.2 362 30.9
SMO296G0001 Selaginella moellendorffii HOM05D004223 ORTHO05D004792 1.0e-38 165.2 387 32.6
CDE09G0669 Ceratophyllum demersum HOM05D004223 ORTHO05D004792 1.8e-38 164.5 306 35.0
Hund21517 Selenicereus undatus HOM05D004223 ORTHO05D004792 1.3e-36 158.3 397 30.2
Eucgr.A02011 Eucalyptus grandis HOM05D004223 ORTHO05D004792 8.1e-36 155.6 306 35.0
SGA_v2.0_scaffold1G00153 Striga asiatica HOM05D004223 ORTHO05D004792 3.1e-35 153.7 405 31.1
Duzib138G1261 Durio zibethinus HOM05D004223 ORTHO05D004792 1.2e-34 151.8 391 32.7
Ah.14g086580 Amaranthus hybridus HOM05D004223 ORTHO05D004792 2.9e-33 147.1 318 34.3
Actinidia39561 Actinidia chinensis HOM05D004223 ORTHO05D004792 3.8e-33 146.7 354 35.3
COL.COLO4_06072 Corchorus olitorius HOM05D004223 ORTHO05D004792 1.8e-30 137.9 230 38.7
FAN14G4329 Fragaria x ananassa HOM05D004223 ORTHO05D004792 5.1e-30 136.3 403 30.3
Ca_18272_v3 Cicer arietinum L. HOM05D004223 ORTHO05D004792 3.1e-27 127.1 224 35.3
Haze_13521 Corylus avellana HOM05D004223 ORTHO05D004792 9.0e-27 125.6 104 56.7
Atru.chr10.1338 Acer truncatum HOM05D004223 ORTHO05D004792 1.2e-26 125.2 120 47.5
MSTRG.16215 Avicennia marina HOM05D004223 ORTHO05D004792 7.6e-26 122.5 136 47.8
SGA_v2.0_scaffold333G49006 Striga asiatica HOM05D004223 ORTHO05D004792 5.0e-25 119.8 399 27.8
Oeu040112.1 Olea europaea HOM05D004223 ORTHO05D004792 2.5e-24 117.5 110 52.7
Atru.chr10.1339 Acer truncatum HOM05D004223 ORTHO05D004792 1.6e-23 114.8 205 36.1
unitig_37.g12105 Utricularia gibba HOM05D004223 ORTHO05D004792 2.1e-23 114.4 153 42.5
MBI10_g27412_MAGBIO Magnolia biondii HOM05D004223 ORTHO05D004792 2.7e-23 114.0 103 51.5
vmacro10944 Vaccinium macrocarpon HOM05D004223 ORTHO05D004792 2.7e-23 114.0 434 26.5
FAN16G0695 Fragaria x ananassa HOM05D004223 ORTHO05D004792 1.0e-22 112.1 241 31.5
Actinidia22922 Actinidia chinensis HOM05D004223 ORTHO05D004792 2.3e-22 110.9 142 46.5
unitig_37.g12104 Utricularia gibba HOM05D004223 ORTHO05D004792 4.3e-21 106.7 186 34.4
FAN21G3874 Fragaria x ananassa HOM05D004223 ORTHO05D004792 3.1e-19 100.5 120 45.8
CDE02G0113 Ceratophyllum demersum HOM05D004223 ORTHO05D004792 2.6e-18 97.4 105 44.8
Haze_05551 Corylus avellana HOM05D004223 ORTHO05D004792 2.6e-18 97.4 140 42.1
Actinidia22925 Actinidia chinensis HOM05D004223 ORTHO05D004792 1.9e-16 91.3 76 60.5
Oeu040113.1 Olea europaea HOM05D004223 ORTHO05D004792 1.9e-16 91.3 151 37.1
FAN05G0022 Fragaria x ananassa HOM05D004223 ORTHO05D004792 4.6e-15 86.7 330 32.1
TPR.G14049 Trifolium pratense HOM05D004223 ORTHO05D004792 1.5e-13 81.6 98 43.9
SMO174G0155 Selaginella moellendorffii HOM05D004223 ORTHO05D004792 4.8e-12 76.6 238 27.3
CSS0012222 Camellia sinensis var. sinensis HOM05D004223 ORTHO05D004792 3.1e-11 73.9 107 43.0
Dinv05253 Davidia involucrata HOM05D004223 ORTHO05D004792 3.2e-08 63.9 52 55.8
CSS0013327 Camellia sinensis var. sinensis HOM05D004223 ORTHO05D004792 5.5e-08 63.2 112 40.2
Dinv05252 Davidia involucrata HOM05D004223 ORTHO05D004792 1.6e-07 61.6 94 42.6
Sp6g06470 Schrenkiella parvula HOM05D002123 ORTHO05D371241 1.8e-06 58.2 43 65.1
PGSC0003DMG400012960 Solanum tuberosum HOM05D004223 ORTHO05D004792 1.8e-06 58.2 87 40.2
SpUn0450_0010 Schrenkiella parvula HOM05D004223 ORTHO05D004792 5.1e-06 56.6 186 31.2


User provided reference genes

Program Settings