Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g07475 Brassica carinata HOM05D002525 ORTHO05D002727 2.3e-45 185.3 96 100.0
A07p24600 Brassica napus HOM05D002525 ORTHO05D002727 6.6e-29 130.6 69 95.7
Sp5g03800 Schrenkiella parvula HOM05D002525 ORTHO05D002727 1.1e-28 129.8 69 97.1
BraA07t30105Z Brassica rapa HOM05D002525 ORTHO05D002727 2.5e-28 128.6 69 94.2
BcaC07g40321 Brassica carinata HOM05D002525 ORTHO05D002727 5.6e-28 127.5 69 94.2
BcaC07g40463 Brassica carinata HOM05D002525 ORTHO05D002727 5.6e-28 127.5 69 94.2
A09p51610 Brassica napus HOM05D002525 ORTHO05D002727 5.6e-28 127.5 69 94.2
BraA09t40600Z Brassica rapa HOM05D002525 ORTHO05D002727 5.6e-28 127.5 69 94.2
BolC6t37772H Brassica oleracea HOM05D002525 ORTHO05D002727 7.3e-28 127.1 68 92.6
BolC6t37765H Brassica oleracea HOM05D002525 ORTHO05D002727 1.2e-27 126.3 69 92.8
C08p34380 Brassica napus HOM05D002525 ORTHO05D002727 2.1e-27 125.6 69 92.8
BolC8t51037H Brassica oleracea HOM05D002525 ORTHO05D002727 2.1e-27 125.6 69 92.8
Carub.0005s2604 Capsella rubella HOM05D002525 ORTHO05D002727 3.6e-27 124.8 69 92.8
CARHR169680 Cardamine hirsuta HOM05D002525 ORTHO05D002727 8.0e-27 123.6 69 91.3
AL5G41180 Arabidopsis lyrata HOM05D002525 ORTHO05D002727 1.1e-26 123.2 69 91.3
AT3G59300 Arabidopsis thaliana HOM05D002525 ORTHO05D002727 1.1e-26 123.2 69 91.3
Aa31LG10G13660 Aethionema arabicum HOM05D002525 ORTHO05D002727 1.8e-26 122.5 69 89.9
Thhalv10005960m.g Eutrema salsugineum HOM05D002525 ORTHO05D002727 6.8e-26 120.6 69 88.4
THA.LOC104803553 Tarenaya hassleriana HOM05D002525 ORTHO05D002727 4.7e-19 97.8 67 74.6
CSS0033500 Camellia sinensis var. sinensis HOM05D002525 ORTHO05D002727 2.0e-17 92.4 64 67.2
Haze_00705 Corylus avellana HOM05D002525 ORTHO05D002727 7.6e-17 90.5 64 67.2
Cfa015788 Carpinus fangiana HOM05D002525 ORTHO05D002727 9.9e-17 90.1 64 67.2
Dinv22676 Davidia involucrata HOM05D002525 ORTHO05D002727 9.9e-17 90.1 64 70.3
SalBow3G3324 Salvia bowleyana HOM05D002525 ORTHO05D002727 9.9e-17 90.1 66 66.7
Actinidia35898 Actinidia chinensis HOM05D002525 ORTHO05D002727 1.3e-16 89.7 58 72.4
Hma1.2p1_0597F.1_g186370 Hydrangea macrophylla HOM05D002525 ORTHO05D002727 1.7e-16 89.4 64 67.2
Prupe.1G185800 Prunus persica HOM05D002525 ORTHO05D002727 2.2e-16 89.0 63 69.8
CANSAT78G0936 Cannabis sativa HOM05D002525 ORTHO05D002727 3.7e-16 88.2 64 70.3
Lj6A63G29 Lonicera japonica HOM05D002525 ORTHO05D002727 3.7e-16 88.2 66 69.7
Potri.002G230700 Populus trichocarpa HOM05D002525 ORTHO05D002727 6.4e-16 87.4 65 61.5
MD04G1036900 Malus domestica HOM05D002525 ORTHO05D002727 1.1e-15 86.7 66 65.2
Atru.chr3.1641 Acer truncatum HOM05D002525 ORTHO05D002727 1.4e-15 86.3 65 64.6
RcHm_v2.0_Chr4g0408711 Rosa chinensis HOM05D002525 ORTHO05D002727 1.4e-15 86.3 63 66.7
Manes.04G049700 Manihot esculenta HOM05D002525 ORTHO05D002727 1.9e-15 85.9 65 63.1
Oeu050358.1 Olea europaea HOM05D002525 ORTHO05D002727 1.9e-15 85.9 59 72.9
PGR142G2573 Punica granatum HOM05D002525 ORTHO05D002727 1.9e-15 85.9 60 68.3
FvH4_4g11600 Fragaria vesca HOM05D002525 ORTHO05D002727 3.2e-15 85.1 63 65.1
FAN12G1140 Fragaria x ananassa HOM05D002525 ORTHO05D002727 3.2e-15 85.1 63 65.1
FAN12G2385 Fragaria x ananassa HOM05D002525 ORTHO05D002727 3.2e-15 85.1 63 65.1
FAN22G1390 Fragaria x ananassa HOM05D002525 ORTHO05D002727 3.2e-15 85.1 63 65.1
QL10p046294 Quercus lobata HOM05D002525 ORTHO05D002727 3.2e-15 85.1 64 65.6
Sabra14G0115300 Salix brachista HOM05D002525 ORTHO05D002727 3.2e-15 85.1 65 58.5
FAN17G1718 Fragaria x ananassa HOM05D002525 ORTHO05D002727 4.1e-15 84.7 63 63.5
Gohir.1Z049479 Gossypium hirsutum HOM05D002525 ORTHO05D002727 4.1e-15 84.7 65 64.6
Gorai.009G350800 Gossypium raimondii HOM05D002525 ORTHO05D002727 4.1e-15 84.7 65 64.6
Sabra02G0175900 Salix brachista HOM05D002525 ORTHO05D002727 4.1e-15 84.7 65 58.5
Eucgr.H00428 Eucalyptus grandis HOM05D002525 ORTHO05D002727 7.1e-15 84.0 64 59.4
MELO3C017686.2 Cucumis melo HOM05D002525 ORTHO05D002727 9.2e-15 83.6 65 64.6
ClCG07G016560 Citrullus lanatus HOM05D002525 ORTHO05D002727 1.2e-14 83.2 65 64.6
Gohir.D05G326200 Gossypium hirsutum HOM05D002525 ORTHO05D002727 1.2e-14 83.2 65 64.6
GSVIVG01013557001 Vitis vinifera HOM05D002525 ORTHO05D002727 1.2e-14 83.2 58 69.0
Peaxi162Scf00375g01017 Petunia axillaris HOM05D002525 ORTHO05D002727 1.6e-14 82.8 62 62.9
CAN.G65.189 Capsicum annuum HOM05D002525 ORTHO05D002727 2.7e-14 82.0 61 67.2
ECA248G3080 Erigeron canadensis HOM05D002525 ORTHO05D002727 2.7e-14 82.0 56 69.6
Cc03_g11230 Coffea canephora HOM05D002525 ORTHO05D002727 3.5e-14 81.6 64 67.2
HanXRQChr14g0454141 Helianthus annuus HOM05D002525 ORTHO05D002727 3.5e-14 81.6 56 69.6
Solyc06g073500.3 Solanum lycopersicum HOM05D002525 ORTHO05D002727 4.6e-14 81.3 61 65.6
Lalb_Chr10g0106411 Lupinus albus HOM05D002525 ORTHO05D002727 7.8e-14 80.5 54 70.4
Sopen06g029860 Solanum pennellii HOM05D002525 ORTHO05D002727 1.0e-13 80.1 61 63.9
COL.COLO4_24369 Corchorus olitorius HOM05D002525 ORTHO05D002727 1.3e-13 79.7 57 66.7
Nitab4.5_0002368g0070 Nicotiana tabacum HOM05D002525 ORTHO05D002727 1.7e-13 79.3 61 62.3
Thecc.04G183400 Theobroma cacao HOM05D002525 ORTHO05D002727 2.3e-13 79.0 64 57.8
PGSC0003DMG400027004 Solanum tuberosum HOM05D002525 ORTHO05D002727 3.0e-13 78.6 54 72.2
vmacro00573 Vaccinium macrocarpon HOM05D002525 ORTHO05D002727 5.1e-13 77.8 58 67.2
Rhsim09G0034900 Rhododendron simsii HOM05D002525 ORTHO05D002727 6.6e-13 77.4 55 69.1
Lsat_1_v5_gn_1_71460 Lactuca sativa HOM05D002525 ORTHO05D002727 3.3e-12 75.1 56 64.3
Lalb_Chr17g0348071 Lupinus albus HOM05D002525 ORTHO05D002727 3.3e-12 75.1 54 66.7
PSO017G7186 Papaver somniferum HOM05D002525 ORTHO05D002727 4.3e-12 74.7 64 59.4
arahy.Tifrunner.gnm1.ann1.8GR7XD Arachis hypogaea HOM05D002525 ORTHO05D002727 1.2e-11 73.2 54 68.5
arahy.Tifrunner.gnm1.ann1.RBM2HP Arachis hypogaea HOM05D002525 ORTHO05D002727 1.2e-11 73.2 54 68.5
TAR362G1149 Trochodendron aralioides HOM05D002525 ORTHO05D002727 1.2e-11 73.2 64 59.4
Migut.G01023 Erythranthe guttata HOM05D002525 ORTHO05D002727 1.6e-11 72.8 59 61.0
PSO675G4209 Papaver somniferum HOM05D002525 ORTHO05D002727 2.1e-11 72.4 64 57.8
LjContig00049g0021232 Lotus japonicus HOM05D002525 ORTHO05D002727 4.7e-11 71.2 54 61.1
Sed0019908 Sechium edule HOM05D002525 ORTHO05D002727 4.7e-11 71.2 58 63.8
Phvul.008G199500 Phaseolus vulgaris HOM05D002525 ORTHO05D002727 1.1e-10 70.1 54 64.8
SGA_v2.0_scaffold12G06150 Striga asiatica HOM05D002525 ORTHO05D002727 1.4e-10 69.7 59 57.6
Glyma.14G033200 Glycine max HOM05D002525 ORTHO05D002727 1.8e-10 69.3 54 63.0
ATR0743G277 Amborella trichopoda HOM05D002525 ORTHO05D002727 2.4e-10 68.9 81 51.9
PSO266G0052 Papaver somniferum HOM05D002525 ORTHO05D002727 5.2e-10 67.8 62 54.8
PSO478G0963 Papaver somniferum HOM05D002525 ORTHO05D002727 5.2e-10 67.8 62 54.8
HPP92_005391 Vanilla planifolia HOM05D002525 ORTHO05D002727 5.2e-10 67.8 85 47.1
MBI01_g17607_MAGBIO Magnolia biondii HOM05D002525 ORTHO05D002727 6.8e-10 67.4 67 49.3
MBI08_g18912_MAGBIO Magnolia biondii HOM05D002525 ORTHO05D002727 6.8e-10 67.4 64 53.1
VMungo0647G1685 Vigna mungo HOM05D002525 ORTHO05D002727 6.8e-10 67.4 54 63.0
Psat2g018040 Pisum sativum HOM05D000338 ORTHO05D002727 1.5e-09 66.2 55 58.2
Medtr5g090150 Medicago truncatula HOM05D002525 ORTHO05D002727 4.4e-09 64.7 55 58.2
Nn6g32107 Nelumbo nucifera HOM05D002525 ORTHO05D002727 7.6e-09 63.9 49 61.2
Ah.07g206470 Amaranthus hybridus HOM05D002525 ORTHO05D002727 9.9e-09 63.5 66 47.0
arahy.Tifrunner.gnm1.ann1.QBZ9GT Arachis hypogaea HOM05D002525 ORTHO05D002727 9.9e-09 63.5 58 55.2
EL10Ac3g05402 Beta vulgaris HOM05D002525 ORTHO05D002727 9.9e-09 63.5 66 48.5
TPR.G24735 Trifolium pratense HOM05D002525 ORTHO05D002727 9.9e-09 63.5 55 54.5
Zm00001eb144530 Zea mays HOM05D002525 ORTHO05D002727 9.9e-09 63.5 61 50.8
Nn1g01679 Nelumbo nucifera HOM05D002525 ORTHO05D002727 1.3e-08 63.2 49 61.2
TWI23G0431 Tripterygium wilfordii HOM05D002525 ORTHO05D002727 1.3e-08 63.2 57 54.4
TWI14G1392 Tripterygium wilfordii HOM05D002525 ORTHO05D002727 1.7e-08 62.8 57 54.4
TWI39G0615 Tripterygium wilfordii HOM05D002525 ORTHO05D002727 2.2e-08 62.4 57 54.4
MELO3C006952.2 Cucumis melo HOM05D002525 ORTHO05D002727 2.9e-08 62.0 68 47.1
Lalb_Chr21g0305281 Lupinus albus HOM05D002525 ORTHO05D002727 2.9e-08 62.0 54 53.7
Medtr6g052360 Medicago truncatula HOM05D002525 ORTHO05D002727 3.8e-08 61.6 58 53.4
Psat0s2905g0040 Pisum sativum HOM05D002525 ORTHO05D002727 3.8e-08 61.6 58 53.4
Hund04794 Selenicereus undatus HOM05D002525 ORTHO05D002727 3.8e-08 61.6 66 47.0
Zm00001eb197710 Zea mays HOM05D002525 ORTHO05D002727 3.8e-08 61.6 58 53.4
Potri.017G148600 Populus trichocarpa HOM05D002525 ORTHO05D002727 4.9e-08 61.2 59 50.8
Lalb_Chr19g0130551 Lupinus albus HOM05D002525 ORTHO05D002727 6.4e-08 60.8 65 49.2
Os01g0899500 Oryza sativa ssp. japonica HOM05D002525 ORTHO05D002727 6.4e-08 60.8 61 49.2
GSVIVG01028827001 Vitis vinifera HOM05D002525 ORTHO05D002727 6.4e-08 60.8 65 47.7
C06p25940 Brassica napus HOM05D002525 ORTHO05D002727 8.4e-08 60.5 32 87.5
VMungo0464G0872 Vigna mungo HOM05D002525 ORTHO05D002727 8.4e-08 60.5 64 46.9
Glyma.09G129500 Glycine max HOM05D002525 ORTHO05D002727 1.4e-07 59.7 64 46.9
Sed0017638 Sechium edule HOM05D002525 ORTHO05D002727 1.4e-07 59.7 64 50.0
unitig_46.g18808 Utricularia gibba HOM05D002525 ORTHO05D002727 1.4e-07 59.7 57 47.4
Ciclev10004809m.g Citrus clementina HOM05D002525 ORTHO05D002727 1.9e-07 59.3 65 46.2
Duzib205G1599 Durio zibethinus HOM05D002525 ORTHO05D002727 1.9e-07 59.3 64 48.4
Lj2g0008696 Lotus japonicus HOM05D002525 ORTHO05D002727 1.9e-07 59.3 58 51.7
CDE09G0420 Ceratophyllum demersum HOM05D002525 ORTHO05D002727 2.4e-07 58.9 55 54.5
SalBow4G2719 Salvia bowleyana HOM05D002525 ORTHO05D002727 2.4e-07 58.9 57 52.6
Cpa.g.sc107.123 Carica papaya HOM05D002525 ORTHO05D002727 3.2e-07 58.5 54 50.0
ClCG05G008470 Citrullus lanatus HOM05D002525 ORTHO05D002727 3.2e-07 58.5 64 50.0
Peaxi162Scf00444g00236 Petunia axillaris HOM05D002525 ORTHO05D002727 3.2e-07 58.5 66 48.5
Phvul.004G106100 Phaseolus vulgaris HOM05D002525 ORTHO05D002727 3.2e-07 58.5 64 45.3
Prupe.2G302100 Prunus persica HOM05D002525 ORTHO05D002727 3.2e-07 58.5 49 59.2
Solyc03g007590.4 Solanum lycopersicum HOM05D002525 ORTHO05D002727 3.2e-07 58.5 66 48.5
Sopen03g003540 Solanum pennellii HOM05D002525 ORTHO05D002727 3.2e-07 58.5 66 48.5
PGSC0003DMG401028895 Solanum tuberosum HOM05D002525 ORTHO05D002727 3.2e-07 58.5 49 57.1
Thecc.03G185700 Theobroma cacao HOM05D002525 ORTHO05D002727 3.2e-07 58.5 57 49.1
CSS0005283 Camellia sinensis var. sinensis HOM05D002525 ORTHO05D002727 4.2e-07 58.2 60 46.7
CAN.G204.26 Capsicum annuum HOM05D002525 ORTHO05D002727 4.2e-07 58.2 49 55.1
Cfa016300 Carpinus fangiana HOM05D002525 ORTHO05D002727 4.2e-07 58.2 57 50.9
HanXRQChr14g0462571 Helianthus annuus HOM05D002525 ORTHO05D002727 4.2e-07 58.2 59 52.5
MD01G1209500 Malus domestica HOM05D002525 ORTHO05D002727 4.2e-07 58.2 54 53.7
MD07G1279800 Malus domestica HOM05D002525 ORTHO05D002727 4.2e-07 58.2 49 59.2
Nitab4.5_0000472g0070 Nicotiana tabacum HOM05D002525 ORTHO05D002727 4.2e-07 58.2 66 48.5
Nitab4.5_0001331g0040 Nicotiana tabacum HOM05D002525 ORTHO05D002727 4.2e-07 58.2 66 48.5
Potri.004G072400 Populus trichocarpa HOM05D002525 ORTHO05D002727 4.2e-07 58.2 65 46.2
CAN.G126.37 Capsicum annuum HOM05D002525 ORTHO05D002727 5.4e-07 57.8 66 47.0
AUR62031435 Chenopodium quinoa HOM05D002525 ORTHO05D002727 5.4e-07 57.8 54 51.9
DCAR_014523 Daucus carota HOM05D002525 ORTHO05D002727 5.4e-07 57.8 60 48.3
Manes.14G021400 Manihot esculenta HOM05D002525 ORTHO05D002727 5.4e-07 57.8 59 52.5
Sabra17G0123900 Salix brachista HOM05D002525 ORTHO05D002727 5.4e-07 57.8 59 49.2
Sc25g0000710 Simmondsia chinensis HOM05D002525 ORTHO05D002727 5.4e-07 57.8 51 52.9
Sopen06g012120 Solanum pennellii HOM05D002525 ORTHO05D002727 5.4e-07 57.8 49 57.1
Haze_00057 Corylus avellana HOM05D002525 ORTHO05D002727 7.1e-07 57.4 49 55.1
Gohir.A08G085500 Gossypium hirsutum HOM05D002525 ORTHO05D002727 7.1e-07 57.4 57 49.1
Gorai.004G117000 Gossypium raimondii HOM05D002525 ORTHO05D002727 7.1e-07 57.4 64 46.9
Oeu032744.1 Olea europaea HOM05D002525 ORTHO05D002727 7.1e-07 57.4 62 50.0
QL09p012476 Quercus lobata HOM05D002525 ORTHO05D002727 7.1e-07 57.4 49 57.1
Lsat_1_v5_gn_2_131421 Lactuca sativa HOM05D002525 ORTHO05D002727 9.3e-07 57.0 59 50.8
Sabra04G0047700 Salix brachista HOM05D002525 ORTHO05D002727 9.3e-07 57.0 57 49.1
CsaV3_3G017550 Cucumis sativus L. HOM05D002525 ORTHO05D002727 1.2e-06 56.6 48 58.3
vmacro06618 Vaccinium macrocarpon HOM05D002525 ORTHO05D002727 1.2e-06 56.6 65 41.5
SGA_v2.0_scaffold60G21118 Striga asiatica HOM05D002525 ORTHO05D002727 1.6e-06 56.2 57 49.1
TPR.G9163 Trifolium pratense HOM05D002525 ORTHO05D002727 1.6e-06 56.2 58 50.0
MSTRG.27078 Avicennia marina HOM05D002525 ORTHO05D002727 2.1e-06 55.8 57 49.1
CiPaw.05G261400 Carya illinoinensis HOM05D002525 ORTHO05D002727 2.1e-06 55.8 65 44.6
Cc02_g02270 Coffea canephora HOM05D002525 ORTHO05D002727 2.1e-06 55.8 62 48.4
COL.COLO4_30295 Corchorus olitorius HOM05D002525 ORTHO05D002727 2.1e-06 55.8 64 43.8
Oeu049095.1 Olea europaea HOM05D002525 ORTHO05D002727 2.1e-06 55.8 61 45.9
Migut.F00280 Erythranthe guttata HOM05D002525 ORTHO05D002727 2.7e-06 55.5 57 47.4
Gohir.A11G225000 Gossypium hirsutum HOM05D002525 ORTHO05D002727 2.7e-06 55.5 64 43.8
Gohir.D11G228200 Gossypium hirsutum HOM05D002525 ORTHO05D002727 2.7e-06 55.5 64 43.8
Gorai.003G069200 Gossypium raimondii HOM05D002525 ORTHO05D002727 2.7e-06 55.5 64 43.8
QL09p012520 Quercus lobata HOM05D002525 ORTHO05D002727 2.7e-06 55.5 49 55.1
CANSAT21G1266 Cannabis sativa HOM05D002525 ORTHO05D002727 3.5e-06 55.1 57 49.1
ECA238G3968 Erigeron canadensis HOM05D002525 ORTHO05D002727 3.5e-06 55.1 58 50.0
FvH4_7g30410 Fragaria vesca HOM05D002525 ORTHO05D002727 3.5e-06 55.1 57 47.4
FAN06G0126 Fragaria x ananassa HOM05D002525 ORTHO05D002727 3.5e-06 55.1 57 47.4
FAN06G4058 Fragaria x ananassa HOM05D002525 ORTHO05D002727 3.5e-06 55.1 57 47.4
Hma1.2p1_0327F.1_g126480 Hydrangea macrophylla HOM05D002525 ORTHO05D002727 3.5e-06 55.1 60 43.3
Nitab4.5_0004854g0050 Nicotiana tabacum HOM05D002525 ORTHO05D002727 3.5e-06 55.1 49 53.1
Peaxi162Scf00618g00620 Petunia axillaris HOM05D002525 ORTHO05D002727 3.5e-06 55.1 49 55.1
Nitab4.5_0016317g0020 Nicotiana tabacum HOM05D002525 ORTHO05D002727 4.6e-06 54.7 65 46.2
Aqoxy7G00199 Aquilegia oxysepala HOM05D002525 ORTHO05D002727 6.0e-06 54.3 65 40.0
CDE02G4087 Ceratophyllum demersum HOM05D002525 ORTHO05D002727 6.0e-06 54.3 49 53.1
Dinv28381 Davidia involucrata HOM05D002525 ORTHO05D002727 6.0e-06 54.3 59 45.8
SGA_v2.0_scaffold44G16756 Striga asiatica HOM05D002525 ORTHO05D002727 6.0e-06 54.3 57 47.4
AL5G28840 Arabidopsis lyrata HOM05D000001 ORTHO05D000003 7.8e-06 53.9 61 44.3
THA.LOC104814929 Tarenaya hassleriana HOM05D002525 ORTHO05D002727 7.8e-06 53.9 65 41.5


User provided reference genes

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