Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g07470 Brassica carinata HOM05D006659 ORTHO05D008372 4.8e-135 484.6 257 100.0
A07p24640 Brassica napus HOM05D006659 ORTHO05D008372 1.4e-118 429.9 259 89.6
BolC6t37777H Brassica oleracea HOM05D006659 ORTHO05D008372 1.1e-115 420.2 259 88.0
BcaC08g44982 Brassica carinata HOM05D006659 ORTHO05D008372 5.5e-115 417.9 259 87.3
C06p26120 Brassica napus HOM05D006659 ORTHO05D008372 1.2e-114 416.8 259 87.3
BraA07t30109Z Brassica rapa HOM05D006659 ORTHO05D008372 8.8e-113 410.6 261 86.6
Sp5g03740 Schrenkiella parvula HOM05D006659 ORTHO05D008372 1.6e-109 399.8 262 82.1
A09p51640 Brassica napus HOM05D006659 ORTHO05D008372 7.7e-109 397.5 259 81.1
BcaC07g40279 Brassica carinata HOM05D006659 ORTHO05D008372 1.3e-108 396.7 259 81.9
C08p34410 Brassica napus HOM05D006659 ORTHO05D008372 1.3e-108 396.7 259 81.9
BolC8t51042H Brassica oleracea HOM05D006659 ORTHO05D008372 1.3e-108 396.7 259 81.9
Thhalv10006183m.g Eutrema salsugineum HOM05D006659 ORTHO05D008372 1.6e-106 389.8 262 82.4
BraA09t40604Z Brassica rapa HOM05D006659 ORTHO05D008372 4.7e-106 388.3 259 79.2
BcaC07g40458 Brassica carinata HOM05D006659 ORTHO05D008372 6.8e-105 384.4 260 80.0
AL5G41300 Arabidopsis lyrata HOM05D006659 ORTHO05D008372 7.5e-96 354.4 268 75.7
CARHR169790 Cardamine hirsuta HOM05D006659 ORTHO05D008372 4.1e-94 348.6 265 71.3
AT3G59400 Arabidopsis thaliana HOM05D006659 ORTHO05D008372 2.7e-93 345.9 267 76.0
Carub.0005s2614 Capsella rubella HOM05D006659 ORTHO05D008372 1.1e-91 340.5 265 77.0
Aa31LG10G13750 Aethionema arabicum HOM05D006659 ORTHO05D008372 6.6e-84 314.7 261 70.1
THA.LOC104802307 Tarenaya hassleriana HOM05D006659 ORTHO05D008372 6.2e-74 281.6 266 59.8
THA.LOC104803695 Tarenaya hassleriana HOM05D006659 ORTHO05D008372 2.3e-73 279.6 270 63.7
Rhsim09G0027800 Rhododendron simsii HOM05D006659 ORTHO05D008372 2.0e-64 250.0 230 60.4
RhsimUnG0221100 Rhododendron simsii HOM05D006659 ORTHO05D008372 7.6e-64 248.1 230 60.4
Lj6C54T1 Lonicera japonica HOM05D006659 ORTHO05D008372 9.9e-64 247.7 183 67.2
Glyma.12G052500 Glycine max HOM05D006659 ORTHO05D008372 1.7e-63 246.9 265 54.3
Thecc.04G179900 Theobroma cacao HOM05D006659 ORTHO05D008372 1.1e-62 244.2 186 66.7
Gohir.D10G129500 Gossypium hirsutum HOM05D006659 ORTHO05D008372 5.4e-62 241.9 185 65.9
Gorai.011G142800 Gossypium raimondii HOM05D006659 ORTHO05D008372 5.4e-62 241.9 185 65.9
GSVIVG01010754001 Vitis vinifera HOM05D006659 ORTHO05D008372 1.2e-61 240.7 190 64.2
Gohir.A10G137100 Gossypium hirsutum HOM05D006659 ORTHO05D008372 7.8e-61 238.0 185 64.9
ECA248G3871 Erigeron canadensis HOM05D006659 ORTHO05D008372 1.7e-60 236.9 185 64.9
Duzib151G0383 Durio zibethinus HOM05D006659 ORTHO05D008372 2.3e-60 236.5 264 56.1
Medtr4g067150 Medicago truncatula HOM05D006659 ORTHO05D008372 3.0e-60 236.1 263 55.1
PGR083G0301 Punica granatum HOM05D006659 ORTHO05D008372 3.0e-60 236.1 190 61.1
Sabra17G0019600 Salix brachista HOM05D006659 ORTHO05D008372 3.0e-60 236.1 192 62.5
Ah.07g201990 Amaranthus hybridus HOM05D006659 ORTHO05D008372 5.1e-60 235.3 200 61.5
Potri.007G128200 Populus trichocarpa HOM05D006659 ORTHO05D008372 5.1e-60 235.3 266 56.0
CSS0040017 Camellia sinensis var. sinensis HOM05D006659 ORTHO05D008372 1.5e-59 233.8 271 54.2
EL10Ac3g05931 Beta vulgaris HOM05D006659 ORTHO05D008372 3.3e-59 232.6 284 49.6
Duzib212G0569 Durio zibethinus HOM05D006659 ORTHO05D008372 3.3e-59 232.6 184 64.1
Prupe.1G193000 Prunus persica HOM05D006659 ORTHO05D008372 4.3e-59 232.3 261 55.2
MELO3C011657.2 Cucumis melo HOM05D006659 ORTHO05D008372 1.3e-58 230.7 186 63.4
HanXRQChr01g0004971 Helianthus annuus HOM05D006659 ORTHO05D008372 1.3e-58 230.7 188 62.8
RcHm_v2.0_Chr4g0406801 Rosa chinensis HOM05D006659 ORTHO05D008372 1.3e-58 230.7 197 61.9
COL.COLO4_07662 Corchorus olitorius HOM05D006659 ORTHO05D008372 2.1e-58 229.9 182 63.2
TAR362G1327 Trochodendron aralioides HOM05D006659 ORTHO05D008372 3.6e-58 229.2 264 56.1
Potri.017G030100 Populus trichocarpa HOM05D006659 ORTHO05D008372 4.8e-58 228.8 271 56.1
Atru.chr3.1492 Acer truncatum HOM05D006659 ORTHO05D008372 1.1e-57 227.6 229 60.3
Gorai.006G228300 Gossypium raimondii HOM05D006659 ORTHO05D008372 1.4e-57 227.3 182 64.3
Sabra07G0104600 Salix brachista HOM05D006659 ORTHO05D008372 1.4e-57 227.3 268 56.0
Cpa.g.sc9.272 Carica papaya HOM05D006659 ORTHO05D008372 1.8e-57 226.9 191 62.3
Cc03_g13110 Coffea canephora HOM05D006659 ORTHO05D008372 1.8e-57 226.9 271 54.2
Lalb_Chr03g0026131 Lupinus albus HOM05D006659 ORTHO05D008372 1.8e-57 226.9 262 51.1
CAN.G65.172 Capsicum annuum HOM05D006659 ORTHO05D008372 3.1e-57 226.1 200 60.5
ATR0824G177 Amborella trichopoda HOM05D006659 ORTHO05D008372 4.0e-57 225.7 192 58.3
Lj3g0013401 Lotus japonicus HOM05D006659 ORTHO05D008372 4.0e-57 225.7 273 53.8
CSS0046315 Camellia sinensis var. sinensis HOM05D006659 ORTHO05D008372 5.3e-57 225.3 271 53.9
Os11g0267000 Oryza sativa ssp. japonica HOM05D006659 ORTHO05D008372 5.3e-57 225.3 190 60.5
TWI14G0225 Tripterygium wilfordii HOM05D006659 ORTHO05D008372 6.9e-57 224.9 258 57.4
TWI39G0181 Tripterygium wilfordii HOM05D006659 ORTHO05D008372 6.9e-57 224.9 258 57.4
Dinv22730 Davidia involucrata HOM05D006659 ORTHO05D008372 9.0e-57 224.6 169 65.7
Manes.11G120400 Manihot esculenta HOM05D006659 ORTHO05D008372 2.0e-56 223.4 254 53.9
Dinv44193 Davidia involucrata HOM05D006659 ORTHO05D008372 2.6e-56 223.0 169 65.1
PSO017G5731 Papaver somniferum HOM05D006659 ORTHO05D008372 2.6e-56 223.0 182 60.4
Zm00001eb406810 Zea mays HOM05D006659 ORTHO05D008372 2.6e-56 223.0 191 59.7
Aqoxy2G04093 Aquilegia oxysepala HOM05D006659 ORTHO05D008372 3.4e-56 222.6 263 53.2
VMungo1127G1494 Vigna mungo HOM05D006659 ORTHO05D008372 3.4e-56 222.6 267 51.3
PSO675G8713 Papaver somniferum HOM05D006659 ORTHO05D008372 4.5e-56 222.2 233 52.8
TPR.G34236 Trifolium pratense HOM05D006659 ORTHO05D008372 5.8e-56 221.9 264 50.4
CANSAT78G0008 Cannabis sativa HOM05D006659 ORTHO05D008372 7.6e-56 221.5 193 61.1
Psat7g214800 Pisum sativum HOM05D006659 ORTHO05D008372 7.6e-56 221.5 263 56.3
FAN07G0020 Fragaria x ananassa HOM05D006659 ORTHO05D008372 1.3e-55 220.7 240 54.2
MD04G1040300 Malus domestica HOM05D006659 ORTHO05D008372 1.3e-55 220.7 260 51.2
Ciclev10021505m.g Citrus clementina HOM05D006659 ORTHO05D008372 1.7e-55 220.3 191 60.2
Nitab4.5_0008969g0010 Nicotiana tabacum HOM05D006659 ORTHO05D008372 1.7e-55 220.3 230 57.4
QL10p048762 Quercus lobata HOM05D006659 ORTHO05D008372 2.9e-55 219.5 264 50.4
Sopen06g029650 Solanum pennellii HOM05D006659 ORTHO05D008372 2.9e-55 219.5 267 54.3
PGSC0003DMG400027013 Solanum tuberosum HOM05D006659 ORTHO05D008372 2.9e-55 219.5 269 54.3
arahy.Tifrunner.gnm1.ann1.AVW0M7 Arachis hypogaea HOM05D006659 ORTHO05D008372 3.8e-55 219.2 266 50.4
Migut.N03108 Erythranthe guttata HOM05D006659 ORTHO05D008372 3.8e-55 219.2 182 59.3
Solyc06g073290.1 Solanum lycopersicum HOM05D006659 ORTHO05D008372 4.9e-55 218.8 267 52.8
Haze_01513 Corylus avellana HOM05D006659 ORTHO05D008372 1.1e-54 217.6 235 51.5
Phvul.011G054500 Phaseolus vulgaris HOM05D006659 ORTHO05D008372 1.1e-54 217.6 267 52.8
ClCG08G004640 Citrullus lanatus HOM05D006659 ORTHO05D008372 1.4e-54 217.2 263 52.9
arahy.Tifrunner.gnm1.ann1.Q6M2DC Arachis hypogaea HOM05D006659 ORTHO05D008372 1.9e-54 216.9 269 48.7
Gohir.A09G211000 Gossypium hirsutum HOM05D006659 ORTHO05D008372 1.9e-54 216.9 256 55.9
AUR62015391 Chenopodium quinoa HOM05D006283 ORTHO05D007727 2.4e-54 216.5 205 56.1
Gohir.D09G204400 Gossypium hirsutum HOM05D006659 ORTHO05D008372 2.4e-54 216.5 256 54.7
FvH4_4g10790 Fragaria vesca HOM05D006659 ORTHO05D008372 5.4e-54 215.3 240 51.2
FAN12G1956 Fragaria x ananassa HOM05D006659 ORTHO05D008372 5.4e-54 215.3 240 51.2
Sed0027988 Sechium edule HOM05D006659 ORTHO05D008372 9.3e-54 214.5 188 59.6
MBI08_g14954_MAGBIO Magnolia biondii HOM05D006659 ORTHO05D008064 1.6e-53 213.8 248 52.4
CiPaw.01G100500 Carya illinoinensis HOM05D006659 ORTHO05D008372 2.7e-53 213.0 273 49.1
Lalb_Chr01g0003161 Lupinus albus HOM05D006659 ORTHO05D008372 3.5e-53 212.6 260 53.1
Sed0004224 Sechium edule HOM05D006659 ORTHO05D008372 4.6e-53 212.2 192 57.3
MSTRG.24582 Avicennia marina HOM05D006659 ORTHO05D008372 7.9e-53 211.5 270 48.9
Lsat_1_v5_gn_1_120661 Lactuca sativa HOM05D006659 ORTHO05D008372 7.9e-53 211.5 260 55.0
Oeu053837.1 Olea europaea HOM05D006659 ORTHO05D008372 7.9e-53 211.5 267 46.8
CsaV3_6G003920 Cucumis sativus L. HOM05D006659 ORTHO05D008372 1.3e-52 210.7 264 51.5
unitig_578.g16263 Utricularia gibba HOM05D006659 ORTHO05D008372 1.8e-52 210.3 234 51.7
Ca_20785_v3 Cicer arietinum L. HOM05D006659 ORTHO05D008372 3.9e-52 209.1 260 54.2
SalBow6G0037 Salvia bowleyana HOM05D006659 ORTHO05D008372 2.5e-51 206.5 261 52.9
Actinidia35977 Actinidia chinensis HOM05D006659 ORTHO05D008372 3.3e-51 206.1 245 56.3
Glyma.11G127800 Glycine max HOM05D006659 ORTHO05D008372 1.8e-49 200.3 204 56.9
Cfa015167 Carpinus fangiana HOM05D006659 ORTHO05D008372 1.5e-48 197.2 177 58.2
Manes.04G042918 Manihot esculenta HOM05D006659 ORTHO05D008372 3.2e-46 189.5 195 52.3
SGA_v2.0_scaffold31G12575 Striga asiatica HOM05D006659 ORTHO05D008372 1.6e-45 187.2 253 46.6
SEGI_36451 Sequoiadendron giganteum HOM05D006659 ORTHO05D008372 1.8e-44 183.7 148 60.1
AagrBONN_evm.TU.Sc2ySwM_228.5135 Anthoceros agrestis HOM05D006659 ORTHO05D008372 2.2e-39 166.8 142 56.3
Peaxi162Scf00413g00827 Petunia axillaris HOM05D006659 ORTHO05D008372 6.5e-39 165.2 188 50.5
CDE04G1206 Ceratophyllum demersum HOM05D006659 ORTHO05D008372 3.5e-37 159.5 137 56.9
Pp3c6_11210 Physcomitrium patens HOM05D006659 ORTHO05D008372 4.6e-37 159.1 151 52.3
Pp3c25_4400 Physcomitrium patens HOM05D006659 ORTHO05D008372 7.9e-37 158.3 151 51.7
Cre05.g246800 Chlamydomonas reinhardtii HOM05D006659 ORTHO05D008372 6.7e-36 155.2 146 49.3
CBR_g10809 Chara braunii HOM05D006659 ORTHO05D008372 8.7e-36 154.8 165 47.9
VMungo1309G1939 Vigna mungo HOM05D006659 ORTHO05D008372 2.5e-35 153.3 254 42.5
SMO170G0079 Selaginella moellendorffii HOM05D006659 ORTHO05D008372 4.3e-35 152.5 155 51.0
Mapoly0173s0019 Marchantia polymorpha HOM05D006659 ORTHO05D008372 2.1e-34 150.2 158 46.8
MCO04G521 Micromonas commoda HOM05D006659 ORTHO05D008372 2.0e-32 143.7 134 50.7
PRCOL_00006170 Prasinoderma coloniale HOM05D006659 ORTHO05D008372 4.6e-29 132.5 159 42.8
Oeu053835.1 Olea europaea HOM05D006659 ORTHO05D008372 1.2e-24 117.9 114 55.3
Eucgr.H00371 Eucalyptus grandis HOM05D006659 ORTHO05D008372 1.0e-20 104.8 109 53.2


User provided reference genes

Program Settings