Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g07455 Brassica carinata HOM05D004197 ORTHO05D004975 7.9e-64 246.9 120 100.0
BcaC07g40496 Brassica carinata HOM05D004197 ORTHO05D004975 6.7e-63 243.8 120 98.3
A09p51920 Brassica napus HOM05D004197 ORTHO05D004975 6.7e-63 243.8 120 98.3
C08p34650 Brassica napus HOM05D004197 ORTHO05D004975 6.7e-63 243.8 120 98.3
BolC8t51067H Brassica oleracea HOM05D004197 ORTHO05D004975 6.7e-63 243.8 120 98.3
BraA09t40628Z Brassica rapa HOM05D004197 ORTHO05D004975 6.7e-63 243.8 120 98.3
BcaC08g44998 Brassica carinata HOM05D004197 ORTHO05D004975 8.7e-63 243.4 120 98.3
A07p24720 Brassica napus HOM05D000455 ORTHO05D000434 8.7e-63 243.4 120 98.3
C06p26290 Brassica napus HOM05D000455 ORTHO05D000434 8.7e-63 243.4 120 98.3
BolC6t37793H Brassica oleracea HOM05D004197 ORTHO05D004975 8.7e-63 243.4 120 98.3
BraA07t30117Z Brassica rapa HOM05D004197 ORTHO05D004975 8.7e-63 243.4 120 98.3
Sp5g03530 Schrenkiella parvula HOM05D004197 ORTHO05D004975 8.7e-63 243.4 120 98.3
Thhalv10006316m.g Eutrema salsugineum HOM05D004197 ORTHO05D004975 4.3e-62 241.1 120 96.7
CARHR170020 Cardamine hirsuta HOM05D004197 ORTHO05D004975 9.6e-62 240.0 120 96.7
AL5G41720 Arabidopsis lyrata HOM05D004197 ORTHO05D004975 1.3e-61 239.6 120 96.7
Carub.0005s2637 Capsella rubella HOM05D004197 ORTHO05D004975 1.3e-61 239.6 120 96.7
AT3G59650 Arabidopsis thaliana HOM05D004197 ORTHO05D004975 1.6e-61 239.2 120 95.8
Aa31LG10G13940 Aethionema arabicum HOM05D004197 ORTHO05D004975 2.8e-61 238.4 120 95.8
Sp2g07880 Schrenkiella parvula HOM05D004197 ORTHO05D004975 1.5e-59 232.6 120 94.2
CiPaw.11G096400 Carya illinoinensis HOM05D004197 ORTHO05D004975 1.3e-55 219.5 120 85.0
Phvul.003G238300 Phaseolus vulgaris HOM05D004197 ORTHO05D004975 2.3e-55 218.8 120 85.0
Atru.chr12.1293 Acer truncatum HOM05D004197 ORTHO05D004975 5.1e-55 217.6 120 85.8
Cpa.g.sc10.180 Carica papaya HOM05D004197 ORTHO05D004975 2.5e-54 215.3 120 84.2
VMungo0251G3068 Vigna mungo HOM05D004197 ORTHO05D004975 2.5e-54 215.3 120 83.3
Atru.chr4.2919 Acer truncatum HOM05D004197 ORTHO05D004975 3.3e-54 214.9 120 85.0
arahy.Tifrunner.gnm1.ann1.4JR04K Arachis hypogaea HOM05D004197 ORTHO05D004975 4.3e-54 214.5 120 83.3
arahy.Tifrunner.gnm1.ann1.5DCW4K Arachis hypogaea HOM05D004197 ORTHO05D004975 4.3e-54 214.5 120 83.3
Glyma.17G164900 Glycine max HOM05D004197 ORTHO05D004975 4.3e-54 214.5 120 82.5
Gohir.A10G143100 Gossypium hirsutum HOM05D004197 ORTHO05D004975 4.3e-54 214.5 120 84.2
Gorai.011G136700 Gossypium raimondii HOM05D004197 ORTHO05D004975 4.3e-54 214.5 120 84.2
Gorai.012G053000 Gossypium raimondii HOM05D004197 ORTHO05D004975 4.3e-54 214.5 120 84.2
Lalb_Chr04g0253841 Lupinus albus HOM05D004197 ORTHO05D004975 4.3e-54 214.5 120 83.3
arahy.Tifrunner.gnm1.ann1.E9H45Q Arachis hypogaea HOM05D004197 ORTHO05D004975 5.7e-54 214.2 119 83.2
CSS0039414 Camellia sinensis var. sinensis HOM05D004197 ORTHO05D004975 5.7e-54 214.2 120 83.3
CSS0047181 Camellia sinensis var. sinensis HOM05D004197 ORTHO05D004975 5.7e-54 214.2 120 83.3
Thecc.04G166300 Theobroma cacao HOM05D004197 ORTHO05D004975 5.7e-54 214.2 120 82.5
Duzib212G0574 Durio zibethinus HOM05D004197 ORTHO05D004975 9.7e-54 213.4 120 82.5
PGR142G4086 Punica granatum HOM05D004197 ORTHO05D004975 9.7e-54 213.4 120 83.3
Gohir.A05G367700 Gossypium hirsutum HOM05D004197 ORTHO05D004975 1.3e-53 213.0 120 83.3
Duzib151G0052 Durio zibethinus HOM05D004197 ORTHO05D004975 1.6e-53 212.6 120 81.7
Gohir.D10G123800 Gossypium hirsutum HOM05D004197 ORTHO05D004975 1.6e-53 212.6 120 83.3
Hma1.2p1_0307F.1_g119895 Hydrangea macrophylla HOM05D004197 ORTHO05D004975 1.6e-53 212.6 120 83.3
Cfa015042 Carpinus fangiana HOM05D004197 ORTHO05D004975 2.2e-53 212.2 120 81.7
Eucgr.G02225 Eucalyptus grandis HOM05D004197 ORTHO05D004975 2.2e-53 212.2 120 81.7
Gohir.D04G047600 Gossypium hirsutum HOM05D004197 ORTHO05D004975 2.2e-53 212.2 120 83.3
QL10p055721 Quercus lobata HOM05D004197 ORTHO05D004975 2.2e-53 212.2 119 85.7
TWI32G1250 Tripterygium wilfordii HOM05D004197 ORTHO05D004975 2.8e-53 211.8 120 82.5
Glyma.05G102000 Glycine max HOM05D004197 ORTHO05D004975 3.7e-53 211.5 120 82.5
THA.LOC104804007 Tarenaya hassleriana HOM05D004197 ORTHO05D004975 4.8e-53 211.1 120 81.7
Lalb_Chr10g0101191 Lupinus albus HOM05D004197 ORTHO05D004975 6.3e-53 210.7 120 80.0
Ah.13g073520 Amaranthus hybridus HOM05D004197 ORTHO05D004975 8.2e-53 210.3 120 81.7
ATR0733G162 Amborella trichopoda HOM05D004197 ORTHO05D004975 1.1e-52 209.9 120 80.8
CiPaw.12G066300 Carya illinoinensis HOM05D004197 ORTHO05D004975 1.1e-52 209.9 120 80.0
MELO3C017759.2 Cucumis melo HOM05D004197 ORTHO05D004975 1.1e-52 209.9 120 82.5
CAN.G525.23 Capsicum annuum HOM05D004197 ORTHO05D004975 2.4e-52 208.8 120 81.7
FvH4_7g06200 Fragaria vesca HOM05D004197 ORTHO05D004975 2.4e-52 208.8 120 84.2
Ciclev10022904m.g Citrus clementina HOM05D004197 ORTHO05D004975 3.1e-52 208.4 120 79.2
Migut.F01587 Erythranthe guttata HOM05D004197 ORTHO05D004975 3.1e-52 208.4 120 80.8
RcHm_v2.0_Chr1g0333831 Rosa chinensis HOM05D004197 ORTHO05D004975 3.1e-52 208.4 120 83.3
HPP92_007604 Vanilla planifolia HOM05D004197 ORTHO05D004975 3.1e-52 208.4 120 79.2
Ca_10539_v3 Cicer arietinum L. HOM05D004197 ORTHO05D004975 5.3e-52 207.6 120 80.0
Ca_23424_v3 Cicer arietinum L. HOM05D004197 ORTHO05D004975 5.3e-52 207.6 120 80.8
FAN01G1948 Fragaria x ananassa HOM05D004197 ORTHO05D004975 6.9e-52 207.2 120 83.3
FAN06G1493 Fragaria x ananassa HOM05D004197 ORTHO05D004975 6.9e-52 207.2 120 83.3
Lj1g0017974 Lotus japonicus HOM05D004197 ORTHO05D004975 6.9e-52 207.2 120 79.2
Psat1g223520 Pisum sativum HOM05D004197 ORTHO05D004975 9.0e-52 206.8 120 79.2
Prupe.1G206900 Prunus persica HOM05D004197 ORTHO05D004975 9.0e-52 206.8 120 81.7
Nitab4.5_0000902g0310 Nicotiana tabacum HOM05D004197 ORTHO05D004975 1.2e-51 206.5 120 80.0
Peaxi162Scf00196g00222 Petunia axillaris HOM05D004197 ORTHO05D004975 1.2e-51 206.5 120 79.2
Rhsim03G0176800 Rhododendron simsii HOM05D004197 ORTHO05D004975 1.2e-51 206.5 119 79.8
Sed0002539 Sechium edule HOM05D004197 ORTHO05D004975 1.2e-51 206.5 120 79.2
Solyc04g014390.3 Solanum lycopersicum HOM05D004197 ORTHO05D004975 1.2e-51 206.5 120 80.8
Sopen04g006520 Solanum pennellii HOM05D004197 ORTHO05D004975 1.2e-51 206.5 120 80.8
TPR.G16667 Trifolium pratense HOM05D004197 ORTHO05D004975 1.2e-51 206.5 119 79.8
FAN03G3355 Fragaria x ananassa HOM05D004197 ORTHO05D004975 1.5e-51 206.1 120 82.5
Phvul.010G124900 Phaseolus vulgaris HOM05D004197 ORTHO05D004975 1.5e-51 206.1 111 85.6
MSTRG.27564 Avicennia marina HOM05D004197 ORTHO05D004975 2.0e-51 205.7 120 80.0
AUR62023799 Chenopodium quinoa HOM05D004197 ORTHO05D004975 2.0e-51 205.7 120 78.3
Cc02_g26370 Coffea canephora HOM05D004197 ORTHO05D004975 2.0e-51 205.7 120 80.8
Nn1g09691 Nelumbo nucifera HOM05D004197 ORTHO05D004975 2.0e-51 205.7 120 78.3
ECA240G1468 Erigeron canadensis HOM05D004197 ORTHO05D004975 2.6e-51 205.3 120 80.8
HanXRQChr10g0286001 Helianthus annuus HOM05D004197 ORTHO05D004975 2.6e-51 205.3 120 82.5
Os03g0207250 Oryza sativa ssp. japonica HOM05D004197 ORTHO05D004975 2.6e-51 205.3 120 81.7
Nitab4.5_0007872g0010 Nicotiana tabacum HOM05D004197 ORTHO05D004975 3.4e-51 204.9 120 79.2
Oeu016610.1 Olea europaea HOM05D004197 ORTHO05D004975 3.4e-51 204.9 120 78.3
GSVIVG01038138001 Vitis vinifera HOM05D004197 ORTHO05D004975 3.4e-51 204.9 120 80.0
Medtr8g022770 Medicago truncatula HOM05D004197 ORTHO05D004975 4.5e-51 204.5 120 79.2
ClCG07G015230 Citrullus lanatus HOM05D004197 ORTHO05D004975 5.9e-51 204.1 120 80.0
CsaV3_4G002820 Cucumis sativus L. HOM05D004197 ORTHO05D004975 5.9e-51 204.1 120 80.8
Manes.06G021100 Manihot esculenta HOM05D004197 ORTHO05D004975 5.9e-51 204.1 120 78.3
QL04p073242 Quercus lobata HOM05D004197 ORTHO05D004975 5.9e-51 204.1 119 80.7
SalBow6G6028 Salvia bowleyana HOM05D004197 ORTHO05D004975 7.7e-51 203.8 118 80.5
PSO832G1844 Papaver somniferum HOM05D004197 ORTHO05D004975 1.0e-50 203.4 119 79.0
Hund04335 Selenicereus undatus HOM05D004197 ORTHO05D004975 1.3e-50 203.0 120 77.5
Zm00001eb400580 Zea mays HOM05D004197 ORTHO05D004975 1.3e-50 203.0 120 80.8
Dinv33200 Davidia involucrata HOM05D004197 ORTHO05D004975 1.7e-50 202.6 119 78.2
PGSC0003DMG401023624 Solanum tuberosum HOM05D004197 ORTHO05D004975 1.7e-50 202.6 120 80.0
EL10Ac6g15364 Beta vulgaris HOM05D004197 ORTHO05D004975 2.2e-50 202.2 120 78.3
CANSAT80G2644 Cannabis sativa HOM05D004197 ORTHO05D004975 2.2e-50 202.2 120 79.2
EL10Ac3g06082 Beta vulgaris HOM05D004197 ORTHO05D004975 2.9e-50 201.8 120 76.7
Lsat_1_v5_gn_6_33001 Lactuca sativa HOM05D004197 ORTHO05D004975 2.9e-50 201.8 120 80.8
ECA247G1539 Erigeron canadensis HOM05D004197 ORTHO05D004975 6.5e-50 200.7 115 82.6
Lsat_1_v5_gn_5_190681 Lactuca sativa HOM05D004197 ORTHO05D004975 6.5e-50 200.7 120 80.0
Psat4g166320 Pisum sativum HOM05D004197 ORTHO05D004975 6.5e-50 200.7 120 75.8
Aqoxy7G00569 Aquilegia oxysepala HOM05D004197 ORTHO05D004975 8.5e-50 200.3 120 77.5
CDE02G1869 Ceratophyllum demersum HOM05D004197 ORTHO05D004975 8.5e-50 200.3 119 77.3
unitig_899.g14470 Utricularia gibba HOM05D004197 ORTHO05D004975 8.5e-50 200.3 120 75.8
PSO017G5565 Papaver somniferum HOM05D004197 ORTHO05D004975 1.1e-49 199.9 119 77.3
PSO675G0737 Papaver somniferum HOM05D004197 ORTHO05D004975 1.1e-49 199.9 119 77.3
Cc03_g14030 Coffea canephora HOM05D004197 ORTHO05D004975 4.2e-49 198.0 120 80.0
PSO591G0183 Papaver somniferum HOM05D004197 ORTHO05D004975 7.2e-49 197.2 119 75.6
TWI34G1638 Tripterygium wilfordii HOM05D004197 ORTHO05D004975 7.2e-49 197.2 144 69.4
MD08G1230600 Malus domestica HOM05D004197 ORTHO05D004975 2.1e-48 195.7 117 78.6
Potri.013G126200 Populus trichocarpa HOM05D004197 ORTHO05D004975 2.1e-48 195.7 120 76.7
TAR362G0244 Trochodendron aralioides HOM05D000090 ORTHO05D001584 4.6e-48 194.5 111 80.2
TAR629G0957 Trochodendron aralioides HOM05D004197 ORTHO05D004975 2.0e-46 189.1 110 80.0
Actinidia11444 Actinidia chinensis HOM05D005056 ORTHO05D006487 1.3e-45 186.4 110 77.3
CDE09G0571 Ceratophyllum demersum HOM05D004197 ORTHO05D004975 2.8e-45 185.3 110 78.2
FAN24G1973 Fragaria x ananassa HOM05D004197 ORTHO05D004975 2.8e-45 185.3 110 81.8
C04p24770 Brassica napus HOM05D004197 ORTHO05D004975 4.8e-45 184.5 110 85.5
BolC4t23981H Brassica oleracea HOM05D004197 ORTHO05D004975 4.8e-45 184.5 110 85.5
FvH4_2g13530 Fragaria vesca HOM05D004197 ORTHO05D004975 4.8e-45 184.5 112 81.2
QL04p093649 Quercus lobata HOM05D004197 ORTHO05D004975 2.4e-44 182.2 111 77.5
SGA_v2.0_scaffold49G18240 Striga asiatica HOM05D004197 ORTHO05D004975 3.1e-44 181.8 110 78.2
BcaC02g10824 Brassica carinata HOM05D004197 ORTHO05D004975 4.1e-44 181.4 110 84.5
arahy.Tifrunner.gnm1.ann1.XY21PC Arachis hypogaea HOM05D004197 ORTHO05D004975 3.2e-41 171.8 131 64.9
TAR493G0004 Trochodendron aralioides HOM05D004197 ORTHO05D004975 1.6e-40 169.5 107 75.7
Lj3g0000340 Lotus japonicus HOM05D004197 ORTHO05D004975 2.7e-40 168.7 124 68.5
Mapoly0027s0066 Marchantia polymorpha HOM05D004197 ORTHO05D004975 1.4e-39 166.4 120 67.5
Gorai.004G083000 Gossypium raimondii HOM05D004197 ORTHO05D004975 5.1e-39 164.5 95 83.2
AUR62002389 Chenopodium quinoa HOM05D004197 ORTHO05D004975 6.7e-39 164.1 213 43.7
SEGI_18755 Sequoiadendron giganteum HOM05D004197 ORTHO05D004975 8.8e-39 163.7 120 61.7
CARHR099320 Cardamine hirsuta HOM05D004197 ORTHO05D004975 9.7e-38 160.2 84 91.7
Gohir.D08G078000 Gossypium hirsutum HOM05D004197 ORTHO05D004975 1.8e-36 156.0 93 80.6
Gohir.D10G075200 Gossypium hirsutum HOM05D004197 ORTHO05D004975 3.1e-36 155.2 91 81.3
Atru.chr12.1301 Acer truncatum HOM05D004197 ORTHO05D004975 4.1e-36 154.8 91 80.2
MBI11_g23942_MAGBIO Magnolia biondii HOM05D004197 ORTHO05D004975 4.1e-36 154.8 95 76.8
Pp3c1_20100 Physcomitrium patens HOM05D004197 ORTHO05D004975 7.0e-36 154.1 120 60.8
Atru.chr12.1273 Acer truncatum HOM05D004197 ORTHO05D004975 9.1e-36 153.7 93 78.5
Gohir.D02G135200 Gossypium hirsutum HOM05D004197 ORTHO05D004975 2.0e-35 152.5 91 80.2
HanXRQChr09g0264591 Helianthus annuus HOM05D004197 ORTHO05D004975 2.0e-35 152.5 94 78.7
arahy.Tifrunner.gnm1.ann1.60591L Arachis hypogaea HOM05D004197 ORTHO05D004975 5.9e-35 151.0 136 61.8
Peaxi162Scf00474g00723 Petunia axillaris HOM05D004197 ORTHO05D004975 7.7e-35 150.6 120 63.3
Gorai.011G081000 Gossypium raimondii HOM05D004197 ORTHO05D004975 1.0e-34 150.2 91 80.2
SHI24203 Sapria himalayana HOM05D004197 ORTHO05D004975 1.7e-34 149.4 133 55.6
Sabra13G0105500 Salix brachista HOM05D004197 ORTHO05D004975 3.8e-34 148.3 169 50.3
Gorai.005G151300 Gossypium raimondii HOM05D004197 ORTHO05D004975 5.0e-34 147.9 91 76.9
Zm00001eb007240 Zea mays HOM05D004197 ORTHO05D004975 5.0e-34 147.9 91 78.0
SalBow2G3321 Salvia bowleyana HOM05D004197 ORTHO05D004975 9.4e-33 143.7 89 76.4
Rhsim02G0084000 Rhododendron simsii HOM05D004197 ORTHO05D004975 2.7e-32 142.1 86 74.4
DCAR_029674 Daucus carota HOM05D004197 ORTHO05D004975 6.1e-32 141.0 91 74.7
unitig_736.g22525 Utricularia gibba HOM05D000398 ORTHO05D000551 1.8e-31 139.4 86 70.9
DCAR_009572 Daucus carota HOM05D004197 ORTHO05D004975 3.0e-31 138.7 91 73.6
TPR.G31074 Trifolium pratense HOM05D004197 ORTHO05D006502 4.4e-30 134.8 94 68.1
Gohir.D08G220700 Gossypium hirsutum HOM05D004197 ORTHO05D004975 3.7e-29 131.7 77 80.5
Lsat_1_v5_gn_6_23540 Lactuca sativa HOM05D004197 ORTHO05D004975 1.6e-27 126.3 95 66.3
arahy.Tifrunner.gnm1.ann1.GGUP18 Arachis hypogaea HOM05D004197 ORTHO05D004975 3.2e-25 118.6 62 87.1
COL.COLO4_08144 Corchorus olitorius HOM05D004197 ORTHO05D004975 4.2e-25 118.2 62 87.1
Hma1.2p1_0150F.1_g066800 Hydrangea macrophylla HOM05D004197 ORTHO05D004975 1.2e-24 116.7 62 85.5
SMO347G0376 Selaginella moellendorffii HOM05D004197 ORTHO05D004975 1.2e-24 116.7 118 44.9
vmacro16589 Vaccinium macrocarpon HOM05D004197 ORTHO05D004975 2.1e-24 115.9 62 83.9
Glyma.07G044001 Glycine max HOM05D004197 ORTHO05D004975 8.0e-24 114.0 91 65.9
Gorai.004G076200 Gossypium raimondii HOM05D004197 ORTHO05D004975 5.7e-22 107.8 120 50.0
Cre06.g270650 Chlamydomonas reinhardtii HOM05D004197 ORTHO05D004975 1.7e-21 106.3 108 47.2
arahy.Tifrunner.gnm1.ann1.HJ8Q1I Arachis hypogaea HOM05D004197 ORTHO05D004975 5.9e-19 97.8 57 77.2
Gohir.D04G172540 Gossypium hirsutum HOM05D004197 ORTHO05D004975 2.5e-17 92.4 61 70.5
MCO09G643 Micromonas commoda HOM05D004197 ORTHO05D004975 3.2e-17 92.0 115 40.0
Lsat_1_v5_gn_2_131080 Lactuca sativa HOM05D004197 ORTHO05D004975 5.5e-17 91.3 82 61.0
Gorai.012G161800 Gossypium raimondii HOM05D004197 ORTHO05D004975 1.2e-16 90.1 61 68.9
Gorai.004G234500 Gossypium raimondii HOM05D004197 ORTHO05D004975 3.4e-14 82.0 57 68.4
Actinidia27110 Actinidia chinensis HOM05D004197 ORTHO05D004975 7.2e-09 64.3 44 70.5
Thecc.10G088100 Theobroma cacao HOM05D004197 ORTHO05D004975 3.4e-06 55.5 35 71.4


User provided reference genes

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