Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g07441 Brassica carinata HOM05D006197 ORTHO05D007718 2.8e-51 204.9 98 100.0
Thhalv10006335m.g Eutrema salsugineum HOM05D006197 ORTHO05D007718 1.2e-46 189.5 98 90.8
Sp5g03300 Schrenkiella parvula HOM05D006197 ORTHO05D007718 3.5e-46 188.0 98 91.8
BcaC08g45013 Brassica carinata HOM05D006197 ORTHO05D007718 4.6e-46 187.6 98 92.9
BolC6t37808H Brassica oleracea HOM05D006197 ORTHO05D007718 4.6e-46 187.6 98 92.9
AL5G41940 Arabidopsis lyrata HOM05D006197 ORTHO05D007718 6.1e-46 187.2 98 90.8
AT3G59840 Arabidopsis thaliana HOM05D006197 ORTHO05D007718 6.1e-46 187.2 98 90.8
Carub.0005s2656 Capsella rubella HOM05D006197 ORTHO05D007718 6.1e-46 187.2 98 90.8
C06p26450 Brassica napus HOM05D006197 ORTHO05D007718 1.0e-45 186.4 98 91.8
Aa31LG10G14080 Aethionema arabicum HOM05D006197 ORTHO05D007718 5.1e-45 184.1 98 89.8
A07p24860 Brassica napus HOM05D006197 ORTHO05D007718 1.1e-44 183.0 99 91.9
BraA07t30130Z Brassica rapa HOM05D006197 ORTHO05D007718 1.1e-44 183.0 99 91.9
BcaC07g40556 Brassica carinata HOM05D006197 ORTHO05D007718 1.5e-44 182.6 98 89.8
A09p52120 Brassica napus HOM05D006197 ORTHO05D007718 1.5e-44 182.6 98 89.8
CARHR170180 Cardamine hirsuta HOM05D006197 ORTHO05D007718 5.7e-44 180.6 98 89.8
BcaC07g40434 Brassica carinata HOM05D006197 ORTHO05D007718 3.7e-43 177.9 98 87.8
THA.LOC104819961 Tarenaya hassleriana HOM05D006197 ORTHO05D007718 1.7e-40 169.1 100 82.0
Cpa.g.sc6.409 Carica papaya HOM05D006197 ORTHO05D007718 4.3e-36 154.5 98 73.5
BolC8t51081H Brassica oleracea HOM05D000403 ORTHO05D004426 1.1e-34 149.8 93 78.5
Eucgr.E00313 Eucalyptus grandis HOM05D006197 ORTHO05D007718 4.5e-33 144.4 98 69.4
Gohir.D08G180000 Gossypium hirsutum HOM05D006197 ORTHO05D007718 1.0e-32 143.3 98 68.4
Gorai.004G188500 Gossypium raimondii HOM05D006197 ORTHO05D007718 1.0e-32 143.3 98 68.4
Gohir.A04G000300 Gossypium hirsutum HOM05D006197 ORTHO05D007718 2.2e-32 142.1 98 67.3
Gohir.A08G159600 Gossypium hirsutum HOM05D006197 ORTHO05D007718 8.5e-32 140.2 98 66.3
Duzib205G0278 Durio zibethinus HOM05D006197 ORTHO05D007718 1.9e-31 139.0 98 66.3
PGR042G3581 Punica granatum HOM05D006197 ORTHO05D007718 1.9e-31 139.0 98 67.3
Ciclev10033154m.g Citrus clementina HOM05D006197 ORTHO05D007718 2.5e-31 138.7 104 70.2
Duzib068G0126 Durio zibethinus HOM05D006197 ORTHO05D007718 2.5e-31 138.7 101 65.3
Atru.chr6.1773 Acer truncatum HOM05D006197 ORTHO05D007718 3.2e-31 138.3 101 68.3
COL.COLO4_17110 Corchorus olitorius HOM05D006197 ORTHO05D007718 3.2e-31 138.3 99 66.7
CiPaw.11G087500 Carya illinoinensis HOM05D006197 ORTHO05D007718 9.4e-31 136.7 100 66.0
TWI81G0993 Tripterygium wilfordii HOM05D006197 ORTHO05D007718 2.1e-30 135.6 99 66.7
MBI11_g07528_MAGBIO Magnolia biondii HOM05D006197 ORTHO05D007718 2.7e-30 135.2 101 65.3
Thecc.03G234100 Theobroma cacao HOM05D006197 ORTHO05D007718 4.7e-30 134.4 99 64.6
Haze_08298 Corylus avellana HOM05D006197 ORTHO05D007718 1.4e-29 132.9 99 66.7
Gorai.008G229000 Gossypium raimondii HOM05D006197 ORTHO05D007718 1.8e-29 132.5 102 63.7
MD16G1269400 Malus domestica HOM05D006197 ORTHO05D007718 3.0e-29 131.7 104 64.4
Prupe.5G046200 Prunus persica HOM05D006197 ORTHO05D007718 3.9e-29 131.3 99 67.7
SalBow1G7863 Salvia bowleyana HOM05D006197 ORTHO05D007718 3.9e-29 131.3 101 63.4
GSVIVG01013230001 Vitis vinifera HOM05D006197 ORTHO05D007718 3.9e-29 131.3 102 66.7
Manes.15G173000 Manihot esculenta HOM05D006197 ORTHO05D007718 5.1e-29 131.0 99 64.6
Cfa012386 Carpinus fangiana HOM05D006197 ORTHO05D007718 8.8e-29 130.2 99 64.6
QL12p007107 Quercus lobata HOM05D006197 ORTHO05D007718 1.1e-28 129.8 103 62.1
CANSAT64G2368 Cannabis sativa HOM05D006197 ORTHO05D007718 2.6e-28 128.6 106 59.4
MBI02_g29718_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D009071 2.6e-28 128.6 97 63.9
Potri.001G146700 Populus trichocarpa HOM05D006197 ORTHO05D007718 2.6e-28 128.6 100 64.0
Gohir.D12G213400 Gossypium hirsutum HOM05D006197 ORTHO05D007718 5.7e-28 127.5 102 61.8
Hma1.2p1_0311F.1_g121310 Hydrangea macrophylla HOM05D006197 ORTHO05D007718 5.7e-28 127.5 101 61.4
HanXRQChr08g0234831 Helianthus annuus HOM05D006197 ORTHO05D007718 1.7e-27 125.9 107 60.7
FAN18G0540 Fragaria x ananassa HOM05D006197 ORTHO05D007718 2.2e-27 125.6 100 62.0
Sabra01G0115400 Salix brachista HOM05D006197 ORTHO05D007718 2.2e-27 125.6 101 66.3
Glyma.11G041000 Glycine max HOM05D006197 ORTHO05D007718 2.8e-27 125.2 100 63.0
Nitab4.5_0006693g0020 Nicotiana tabacum HOM05D006197 ORTHO05D007718 2.8e-27 125.2 104 62.5
arahy.Tifrunner.gnm1.ann1.M9L3KI Arachis hypogaea HOM05D006197 ORTHO05D007718 6.3e-27 124.0 105 60.0
arahy.Tifrunner.gnm1.ann1.PC0NS4 Arachis hypogaea HOM05D006197 ORTHO05D007718 6.3e-27 124.0 105 60.0
Cc08_g01810 Coffea canephora HOM05D006197 ORTHO05D007718 6.3e-27 124.0 104 61.5
FAN04G1051 Fragaria x ananassa HOM05D006197 ORTHO05D007718 6.3e-27 124.0 104 59.6
PGSC0003DMG400024214 Solanum tuberosum HOM05D006197 ORTHO05D007718 6.3e-27 124.0 106 60.4
Cc00_g23310 Coffea canephora HOM05D006197 ORTHO05D007718 8.2e-27 123.6 104 60.6
Cc00_g30230 Coffea canephora HOM05D006197 ORTHO05D007718 8.2e-27 123.6 104 61.5
Lsat_1_v5_gn_6_66400 Lactuca sativa HOM05D006197 ORTHO05D007718 8.2e-27 123.6 111 58.6
Nn1g03717 Nelumbo nucifera HOM05D006197 ORTHO05D007718 8.2e-27 123.6 95 61.1
Sed0004723 Sechium edule HOM05D006197 ORTHO05D007718 8.2e-27 123.6 99 57.6
Sopen05g026900 Solanum pennellii HOM05D006197 ORTHO05D007718 8.2e-27 123.6 106 60.4
Sopen08g025860 Solanum pennellii HOM05D006197 ORTHO05D007718 8.2e-27 123.6 106 60.4
Dinv28915 Davidia involucrata HOM05D006197 ORTHO05D007718 1.1e-26 123.2 102 60.8
TWI15G0656 Tripterygium wilfordii HOM05D006197 ORTHO05D007718 1.4e-26 122.9 104 66.3
Cc00_g26570 Coffea canephora HOM05D006197 ORTHO05D007718 1.8e-26 122.5 104 60.6
FAN08G0099 Fragaria x ananassa HOM05D006197 ORTHO05D007718 1.8e-26 122.5 100 61.0
Rhsim11G0011100 Rhododendron simsii HOM05D006197 ORTHO05D007718 1.8e-26 122.5 102 63.7
VMungo1215G3393 Vigna mungo HOM05D006197 ORTHO05D007718 2.4e-26 122.1 104 61.5
ECA240G0414 Erigeron canadensis HOM05D006197 ORTHO05D007718 3.1e-26 121.7 106 60.4
Migut.N01790 Erythranthe guttata HOM05D006197 ORTHO05D007718 3.1e-26 121.7 105 61.0
Sed0016057 Sechium edule HOM05D006197 ORTHO05D007718 3.1e-26 121.7 103 59.2
Solyc08g077280.1 Solanum lycopersicum HOM05D006197 ORTHO05D007718 4.1e-26 121.3 106 59.4
Aqoxy1G03814 Aquilegia oxysepala HOM05D006197 ORTHO05D007718 5.3e-26 120.9 100 58.0
Dinv25183 Davidia involucrata HOM05D002285 ORTHO05D009255 5.3e-26 120.9 102 57.8
Nitab4.5_0002055g0120 Nicotiana tabacum HOM05D006197 ORTHO05D007718 5.3e-26 120.9 104 60.6
Peaxi162Scf00084g00099 Petunia axillaris HOM05D006197 ORTHO05D007718 5.3e-26 120.9 99 64.6
VMungo1215G1228 Vigna mungo HOM05D006197 ORTHO05D007718 5.3e-26 120.9 104 60.6
RcHm_v2.0_Chr7g0208331 Rosa chinensis HOM05D006197 ORTHO05D007718 7.0e-26 120.6 98 60.2
Glyma.01G201200 Glycine max HOM05D006197 ORTHO05D007718 9.1e-26 120.2 105 61.0
DCAR_008300 Daucus carota HOM05D006197 ORTHO05D007718 1.5e-25 119.4 101 60.4
FAN13G1034 Fragaria x ananassa HOM05D006197 ORTHO05D007718 1.5e-25 119.4 101 58.4
CSS0031892 Camellia sinensis var. sinensis HOM05D006197 ORTHO05D007718 2.0e-25 119.0 107 57.9
CSS0033989 Camellia sinensis var. sinensis HOM05D006197 ORTHO05D007718 2.0e-25 119.0 107 57.9
CSS0037645 Camellia sinensis var. sinensis HOM05D006197 ORTHO05D007718 2.0e-25 119.0 107 57.9
Ca_24632_v3 Cicer arietinum L. HOM05D006197 ORTHO05D007718 2.6e-25 118.6 105 64.8
Medtr5g013975 Medicago truncatula HOM05D006197 ORTHO05D007718 3.5e-25 118.2 108 60.2
Phvul.002G004500 Phaseolus vulgaris HOM05D006197 ORTHO05D007718 3.5e-25 118.2 102 59.8
Lj2g0021118 Lotus japonicus HOM05D006197 ORTHO05D007718 1.3e-24 116.3 102 64.7
Oeu014592.2 Olea europaea HOM05D006197 ORTHO05D007718 1.7e-24 115.9 103 56.3
unitig_747.g21291 Utricularia gibba HOM05D006197 ORTHO05D007718 2.2e-24 115.5 102 54.9
MELO3C003373.2 Cucumis melo HOM05D006197 ORTHO05D007718 2.9e-24 115.2 100 58.0
Oeu006551.1 Olea europaea HOM05D006197 ORTHO05D007718 5.0e-24 114.4 105 58.1
Psat2g174760 Pisum sativum HOM05D006197 ORTHO05D007718 6.5e-24 114.0 105 59.0
TAR624G0346 Trochodendron aralioides HOM05D006197 ORTHO05D007718 6.5e-24 114.0 96 57.3
CsaV3_3G049530 Cucumis sativus L. HOM05D006197 ORTHO05D007718 1.9e-23 112.5 104 52.9
PSO832G1675 Papaver somniferum HOM05D006197 ORTHO05D007718 1.9e-23 112.5 98 55.1
Cc00_g31810 Coffea canephora HOM05D006197 ORTHO05D007718 2.5e-23 112.1 89 62.9
PSO210G4997 Papaver somniferum HOM05D006197 ORTHO05D007718 2.5e-23 112.1 98 55.1
AUR62007231 Chenopodium quinoa HOM05D006197 ORTHO05D007718 1.6e-22 109.4 100 57.0
Lalb_Chr09g0323941 Lupinus albus HOM05D006197 ORTHO05D007718 1.6e-22 109.4 118 50.0
Ah.12g053650 Amaranthus hybridus HOM05D006197 ORTHO05D007718 2.1e-22 109.0 100 58.0
EL10Ac5g12195 Beta vulgaris HOM05D006197 ORTHO05D007718 4.7e-22 107.8 100 54.0
Actinidia03393 Actinidia chinensis HOM05D004955 ORTHO05D005965 6.1e-22 107.5 90 57.8
Duzib084G1370 Durio zibethinus HOM05D006197 ORTHO05D007718 6.1e-22 107.5 98 55.1
Cc08_g02050 Coffea canephora HOM05D006197 ORTHO05D007718 1.0e-21 106.7 67 74.6
Sc01g0007760 Simmondsia chinensis HOM05D006197 ORTHO05D007718 1.4e-21 106.3 65 76.9
AUR62018769 Chenopodium quinoa HOM05D006197 ORTHO05D007718 2.3e-21 105.5 100 56.0
Cc08_g01990 Coffea canephora HOM05D006197 ORTHO05D007718 2.3e-21 105.5 67 73.1
Os05g0500450 Oryza sativa ssp. japonica HOM05D006197 ORTHO05D007718 6.7e-21 104.0 105 54.3
ATR1088G052 Amborella trichopoda HOM05D006197 ORTHO05D007718 1.5e-20 102.8 106 50.0
Phvul.002G003700 Phaseolus vulgaris HOM05D006197 ORTHO05D007718 1.5e-20 102.8 102 53.9
TPR.G6747 Trifolium pratense HOM05D006197 ORTHO05D007718 4.4e-20 101.3 62 72.6
Cc08_g01910 Coffea canephora HOM05D006197 ORTHO05D007718 5.3e-18 94.4 98 53.1
Pp3c14_9970 Physcomitrium patens HOM05D006197 ORTHO05D007718 4.5e-17 91.3 86 50.0
AagrBONN_evm.TU.Sc2ySwM_368.296 Anthoceros agrestis HOM05D006197 ORTHO05D007718 3.8e-16 88.2 90 45.6
Eucgr.C01972 Eucalyptus grandis HOM05D006197 ORTHO05D007718 6.5e-16 87.4 89 48.3
Mapoly0127s0016 Marchantia polymorpha HOM05D006197 ORTHO05D007718 1.1e-15 86.7 87 47.1
Mapoly0046s0110 Marchantia polymorpha HOM05D006197 ORTHO05D007718 1.2e-14 83.2 84 46.4
CBR_g8168 Chara braunii HOM05D006197 ORTHO05D007718 2.1e-14 82.4 52 67.3
Nn1g08520 Nelumbo nucifera HOM05D006197 ORTHO05D007718 3.0e-13 78.6 93 44.1
CAN.G799.18 Capsicum annuum HOM05D006197 ORTHO05D007718 4.4e-12 74.7 55 65.5
SMO119G0374 Selaginella moellendorffii HOM05D006197 ORTHO05D007718 6.3e-11 70.9 88 46.6
Cc08_g01940 Coffea canephora HOM05D000011 ORTHO05D000157 5.4e-10 67.8 32 84.4
Migut.E01523 Erythranthe guttata HOM05D006197 ORTHO05D007718 7.7e-09 63.9 135 35.6
Migut.E01526 Erythranthe guttata HOM05D006197 ORTHO05D007718 7.7e-09 63.9 70 47.1


User provided reference genes

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