Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g07397 Brassica carinata HOM05D004961 ORTHO05D006258 3.1e-184 648.3 312 100.0
BcaC08g45088 Brassica carinata HOM05D004961 ORTHO05D006258 1.4e-125 453.4 342 70.8
C06p26950 Brassica napus HOM05D004961 ORTHO05D006258 1.4e-125 453.4 342 70.8
BolC6t37869H Brassica oleracea HOM05D004961 ORTHO05D006258 1.4e-125 453.4 342 70.8
A07p25240 Brassica napus HOM05D004961 ORTHO05D006258 5.5e-125 451.4 335 73.1
Sp5g02400 Schrenkiella parvula HOM05D004961 ORTHO05D006258 5.5e-125 451.4 350 68.6
A09p53100 Brassica napus HOM05D004961 ORTHO05D006258 6.1e-124 448.0 347 68.3
BraA09t40736Z Brassica rapa HOM05D004961 ORTHO05D006258 1.8e-123 446.4 347 68.0
BraA07t30166Z Brassica rapa HOM05D004961 ORTHO05D006258 6.7e-123 444.5 335 71.0
BcaC07g40605 Brassica carinata HOM05D004961 ORTHO05D006258 7.4e-122 441.0 350 66.9
C08p35800 Brassica napus HOM05D004961 ORTHO05D006258 7.4e-122 441.0 350 66.9
BolC8t51170H Brassica oleracea HOM05D004961 ORTHO05D006258 7.4e-122 441.0 350 66.9
Thhalv10005830m.g Eutrema salsugineum HOM05D004961 ORTHO05D006258 6.3e-121 438.0 351 66.1
BcaC07g42645 Brassica carinata HOM05D004961 ORTHO05D006258 6.9e-120 434.5 357 66.7
CARHR171240 Cardamine hirsuta HOM05D004961 ORTHO05D006258 2.9e-118 429.1 353 65.7
Aa31LG10G15080 Aethionema arabicum HOM05D004961 ORTHO05D006258 3.9e-115 418.7 351 63.5
AL5G43170 Arabidopsis lyrata HOM05D004961 ORTHO05D006258 1.8e-112 409.8 353 62.6
Carub.0005s2761 Capsella rubella HOM05D004961 ORTHO05D006258 1.2e-111 407.1 358 61.7
THA.LOC104802441 Tarenaya hassleriana HOM05D004961 ORTHO05D006258 1.0e-110 404.1 346 63.0
AT3G60850 Arabidopsis thaliana HOM05D004961 ORTHO05D006258 3.2e-109 399.1 354 62.1
Thecc.01G375500 Theobroma cacao HOM05D004961 ORTHO05D006258 8.2e-105 384.4 349 59.6
Gohir.A08G031300 Gossypium hirsutum HOM05D004961 ORTHO05D006258 3.1e-104 382.5 349 59.0
COL.COLO4_12554 Corchorus olitorius HOM05D004961 ORTHO05D006258 9.1e-104 380.9 351 58.1
Duzib133G1444 Durio zibethinus HOM05D004961 ORTHO05D006258 4.5e-103 378.6 349 57.9
Gorai.004G041000 Gossypium raimondii HOM05D004961 ORTHO05D006258 1.0e-102 377.5 349 58.2
Gohir.D08G042400 Gossypium hirsutum HOM05D004961 ORTHO05D006258 2.2e-102 376.3 349 58.2
CiPaw.02G167000 Carya illinoinensis HOM05D004961 ORTHO05D006258 1.9e-101 373.2 351 56.4
Cfa001712 Carpinus fangiana HOM05D004961 ORTHO05D006258 2.5e-101 372.9 352 57.7
QL08p052244 Quercus lobata HOM05D004961 ORTHO05D006258 7.2e-101 371.3 350 56.6
Haze_16810 Corylus avellana HOM05D004961 ORTHO05D006258 9.4e-101 370.9 352 57.4
Sabra14G0049800 Salix brachista HOM05D004961 ORTHO05D006258 4.7e-100 368.6 348 56.9
Gorai.007G091500 Gossypium raimondii HOM05D004961 ORTHO05D006258 1.4e-99 367.1 349 57.0
Potri.014G070200 Populus trichocarpa HOM05D004961 ORTHO05D006258 3.0e-99 365.9 348 57.2
Prupe.2G146400 Prunus persica HOM05D004961 ORTHO05D006258 3.0e-99 365.9 349 57.0
Gohir.A11G081100 Gossypium hirsutum HOM05D004961 ORTHO05D006258 5.2e-99 365.2 349 56.4
CiPaw.01G261500 Carya illinoinensis HOM05D004961 ORTHO05D006258 6.7e-99 364.8 351 56.4
Gohir.D11G085600 Gossypium hirsutum HOM05D004961 ORTHO05D006258 6.7e-99 364.8 351 57.0
Manes.05G044700 Manihot esculenta HOM05D004961 ORTHO05D006258 4.4e-98 362.1 351 56.1
TWI59G0003 Tripterygium wilfordii HOM05D004961 ORTHO05D006258 1.3e-97 360.5 350 55.4
PGR031G0429 Punica granatum HOM05D004961 ORTHO05D006258 2.8e-97 359.4 352 56.8
Lalb_Chr13g0291711 Lupinus albus HOM05D004961 ORTHO05D006258 4.8e-97 358.6 350 56.0
TWI14G0737 Tripterygium wilfordii HOM05D004961 ORTHO05D006258 6.3e-97 358.2 349 55.0
RcHm_v2.0_Chr1g0350691 Rosa chinensis HOM05D004961 ORTHO05D006258 1.1e-96 357.5 351 55.6
CANSAT56G2246 Cannabis sativa HOM05D004961 ORTHO05D006258 1.4e-96 357.1 351 55.0
MD02G1203100 Malus domestica HOM05D004961 ORTHO05D006258 1.8e-96 356.7 349 55.9
MD07G1123000 Malus domestica HOM05D004961 ORTHO05D006258 2.4e-96 356.3 349 55.9
FAN10G1351 Fragaria x ananassa HOM05D004961 ORTHO05D006258 4.1e-96 355.5 349 55.3
FvH4_7g11970 Fragaria vesca HOM05D004961 ORTHO05D006258 5.3e-96 355.1 349 55.3
FAN06G1099 Fragaria x ananassa HOM05D004961 ORTHO05D006258 5.3e-96 355.1 349 55.3
FAN06G1287 Fragaria x ananassa HOM05D004961 ORTHO05D006258 5.3e-96 355.1 349 55.3
FAN10G1405 Fragaria x ananassa HOM05D004961 ORTHO05D006258 5.3e-96 355.1 349 55.3
FAN01G0106 Fragaria x ananassa HOM05D004961 ORTHO05D006258 7.0e-96 354.8 349 55.6
Psat4g195520 Pisum sativum HOM05D004961 ORTHO05D006258 1.2e-95 354.0 353 55.8
vmacro13395 Vaccinium macrocarpon HOM05D004961 ORTHO05D006258 1.2e-95 354.0 351 55.8
arahy.Tifrunner.gnm1.ann1.0VBM10 Arachis hypogaea HOM05D004961 ORTHO05D006258 1.6e-95 353.6 351 57.0
arahy.Tifrunner.gnm1.ann1.T4E2VP Arachis hypogaea HOM05D004961 ORTHO05D006258 1.6e-95 353.6 351 57.0
FAN03G2819 Fragaria x ananassa HOM05D004961 ORTHO05D006258 3.5e-95 352.4 349 55.0
Ciclev10019247m.g Citrus clementina HOM05D004961 ORTHO05D006258 1.0e-94 350.9 343 56.0
Ca_23848_v3 Cicer arietinum L. HOM05D004961 ORTHO05D006258 1.7e-94 350.1 352 56.0
TPR.G21740 Trifolium pratense HOM05D004961 ORTHO05D006258 2.9e-94 349.4 352 54.8
Medtr8g036115 Medicago truncatula HOM05D004961 ORTHO05D006258 5.0e-94 348.6 350 56.0
Rhsim07G0027200 Rhododendron simsii HOM05D004961 ORTHO05D006258 5.0e-94 348.6 351 55.3
Atru.chr5.317 Acer truncatum HOM05D004961 ORTHO05D006258 1.9e-93 346.7 343 56.9
Lj3g0023798 Lotus japonicus HOM05D004961 ORTHO05D006258 1.9e-93 346.7 348 54.6
VMungo0331G0268 Vigna mungo HOM05D004961 ORTHO05D006258 3.2e-93 345.9 355 53.8
Aqoxy7G00605 Aquilegia oxysepala HOM05D004961 ORTHO05D006258 5.5e-93 345.1 350 52.3
Hma1.2p1_0033F.1_g021010 Hydrangea macrophylla HOM05D004961 ORTHO05D006258 5.5e-93 345.1 334 56.6
Hma1.2p1_2294F.1_g319110 Hydrangea macrophylla HOM05D004961 ORTHO05D006258 5.5e-93 345.1 334 56.6
Phvul.010G084800 Phaseolus vulgaris HOM05D004961 ORTHO05D006258 5.5e-93 345.1 355 53.8
Glyma.01G143700 Glycine max HOM05D004961 ORTHO05D006258 1.0e-91 340.9 365 53.4
Lj9P570T30 Lonicera japonica HOM05D004961 ORTHO05D006258 1.4e-91 340.5 351 53.6
AUR62004223 Chenopodium quinoa HOM05D004961 ORTHO05D006258 3.0e-91 339.3 349 55.6
CSS0024555 Camellia sinensis var. sinensis HOM05D004961 ORTHO05D006258 4.0e-91 339.0 350 53.1
Glyma.03G023401 Glycine max HOM05D004961 ORTHO05D006258 8.8e-91 337.8 363 52.6
Nn4g26417 Nelumbo nucifera HOM05D004961 ORTHO05D006258 8.8e-91 337.8 350 51.1
EL10Ac1g00903 Beta vulgaris HOM05D004961 ORTHO05D006258 1.2e-90 337.4 347 55.3
Dinv43717 Davidia involucrata HOM05D004961 ORTHO05D006258 1.2e-90 337.4 381 50.7
TAR375G0417 Trochodendron aralioides HOM05D004961 ORTHO05D006258 2.6e-90 336.3 351 52.7
TAR629G2710 Trochodendron aralioides HOM05D004961 ORTHO05D006258 4.4e-90 335.5 353 52.7
Ah.05g174990 Amaranthus hybridus HOM05D004961 ORTHO05D006258 5.7e-90 335.1 349 54.4
Sed0003746 Sechium edule HOM05D004961 ORTHO05D006258 7.5e-90 334.7 350 52.0
Cc02_g36640 Coffea canephora HOM05D004961 ORTHO05D006258 9.8e-90 334.3 350 54.0
Nitab4.5_0000457g0390 Nicotiana tabacum HOM05D004961 ORTHO05D006258 9.8e-90 334.3 349 53.0
Nitab4.5_0005372g0040 Nicotiana tabacum HOM05D004961 ORTHO05D006258 1.3e-89 334.0 349 52.7
MELO3C006184.2 Cucumis melo HOM05D004961 ORTHO05D006258 8.3e-89 331.3 349 51.6
CsaV3_3G009640 Cucumis sativus L. HOM05D004961 ORTHO05D006258 8.3e-89 331.3 349 51.6
PSO478G4809 Papaver somniferum HOM05D004961 ORTHO05D006258 8.3e-89 331.3 353 51.0
AUR62013625 Chenopodium quinoa HOM05D004961 ORTHO05D006258 1.1e-88 330.9 349 54.2
Sc26g0001210 Simmondsia chinensis HOM05D004961 ORTHO05D006258 1.4e-88 330.5 337 53.4
CSS0035955 Camellia sinensis var. sinensis HOM05D004961 ORTHO05D006258 2.4e-88 329.7 357 53.2
CAN.G388.8 Capsicum annuum HOM05D004961 ORTHO05D006258 1.6e-87 327.0 347 52.2
SalBow5G3969 Salvia bowleyana HOM05D004961 ORTHO05D006258 1.6e-87 327.0 352 51.7
SalBow5G5559 Salvia bowleyana HOM05D004961 ORTHO05D006258 1.6e-87 327.0 352 51.7
PSO782G4206 Papaver somniferum HOM05D004961 ORTHO05D006258 5.9e-87 325.1 353 50.4
HanXRQChr06g0169541 Helianthus annuus HOM05D004961 ORTHO05D006258 1.5e-85 320.5 348 52.0
Migut.N01639 Erythranthe guttata HOM05D004961 ORTHO05D006258 4.2e-85 318.9 320 53.8
Solyc01g091390.2 Solanum lycopersicum HOM05D004961 ORTHO05D006258 4.2e-85 318.9 347 51.3
Sopen01g037160 Solanum pennellii HOM05D004961 ORTHO05D006258 5.5e-85 318.5 347 51.0
PGSC0003DMG400012758 Solanum tuberosum HOM05D004961 ORTHO05D006258 2.1e-84 316.6 347 51.0
ECA236G4958 Erigeron canadensis HOM05D004961 ORTHO05D006258 3.6e-84 315.8 351 51.0
DCAR_025114 Daucus carota HOM05D004961 ORTHO05D006258 8.0e-84 314.7 350 50.9
unitig_8.g3388 Utricularia gibba HOM05D004961 ORTHO05D006258 8.0e-84 314.7 344 52.0
Actinidia12261 Actinidia chinensis HOM05D004961 ORTHO05D006258 3.0e-83 312.8 346 52.0
Peaxi162Scf00021g01613 Petunia axillaris HOM05D004961 ORTHO05D006258 3.0e-83 312.8 289 58.8
Nn4g26286 Nelumbo nucifera HOM05D004961 ORTHO05D006258 3.4e-82 309.3 287 55.4
Lalb_Chr07g0189751 Lupinus albus HOM05D004961 ORTHO05D006258 7.5e-82 308.1 347 50.1
HanXRQChr03g0093851 Helianthus annuus HOM05D004961 ORTHO05D006258 9.8e-82 307.8 337 51.6
Migut.B01640 Erythranthe guttata HOM05D004961 ORTHO05D006258 2.2e-81 306.6 351 49.3
MBI12_g27776_MAGBIO Magnolia biondii HOM05D004961 ORTHO05D006258 6.3e-81 305.1 359 48.7
SHI25769 Sapria himalayana HOM05D004961 ORTHO05D006258 2.4e-80 303.1 349 49.3
ECA234G3702 Erigeron canadensis HOM05D004961 ORTHO05D006258 7.0e-80 301.6 331 49.8
HanXRQChr09g0245711 Helianthus annuus HOM05D004961 ORTHO05D006258 1.6e-79 300.4 333 51.4
Sed0025415 Sechium edule HOM05D004961 ORTHO05D006258 3.5e-79 299.3 287 55.7
HanXRQChr16g0519241 Helianthus annuus HOM05D004961 ORTHO05D006258 2.3e-78 296.6 318 55.0
Eucgr.D02450 Eucalyptus grandis HOM05D004961 ORTHO05D006258 5.0e-78 295.4 319 51.4
Lsat_1_v5_gn_7_7241 Lactuca sativa HOM05D004961 ORTHO05D006258 6.6e-78 295.0 339 52.8
SGA_v2.0_scaffold11G05589 Striga asiatica HOM05D004961 ORTHO05D006258 2.8e-76 289.7 348 50.6
CDE02G2832 Ceratophyllum demersum HOM05D004961 ORTHO05D006258 1.4e-75 287.3 353 49.9
ATR0810G227 Amborella trichopoda HOM05D004961 ORTHO05D006258 5.2e-75 285.4 350 46.9
Oeu005782.1 Olea europaea HOM05D004961 ORTHO05D006258 2.2e-73 280.0 330 48.2
Os03g0247100 Oryza sativa ssp. japonica HOM05D004961 ORTHO05D006258 3.4e-66 256.1 375 42.1
Oeu037913.2 Olea europaea HOM05D004961 ORTHO05D006258 1.3e-65 254.2 325 45.8
HPP92_025672 Vanilla planifolia HOM05D004961 ORTHO05D006258 1.7e-65 253.8 365 44.9
Zm00001eb398630 Zea mays HOM05D004961 ORTHO05D006258 4.7e-60 235.7 289 47.4
Oeu003482.1 Olea europaea HOM05D004961 ORTHO05D006258 2.3e-59 233.4 330 43.9
SEGI_19190 Sequoiadendron giganteum HOM05D004961 ORTHO05D006258 2.0e-58 230.3 361 41.6
CDE11G0257 Ceratophyllum demersum HOM05D004961 ORTHO05D006258 1.6e-55 220.7 257 52.5
GSVIVG01027619001 Vitis vinifera HOM05D004961 ORTHO05D006258 2.1e-55 220.3 191 60.2
ATR0582G166 Amborella trichopoda HOM05D004961 ORTHO05D006258 8.9e-51 204.9 293 43.7
Nn1g01213 Nelumbo nucifera HOM05D004961 ORTHO05D006258 4.9e-49 199.1 246 44.7
BcaC07g40606 Brassica carinata HOM05D003135 ORTHO05D003715 2.1e-47 193.7 253 48.2
unitig_22.g6802 Utricularia gibba HOM05D004961 ORTHO05D006258 5.6e-45 185.7 129 72.1
SMO358G0144 Selaginella moellendorffii HOM05D004961 ORTHO05D006258 3.4e-42 176.4 194 49.0
SMO164G0066 Selaginella moellendorffii HOM05D004961 ORTHO05D006258 8.1e-36 155.2 195 45.6
BcaC07g40608 Brassica carinata HOM05D003135 ORTHO05D006258 2.4e-35 153.7 165 53.9
BcaNung07137 Brassica carinata HOM05D004961 ORTHO05D006258 3.4e-26 123.2 61 91.8
Cpa.g.sc18.116 Carica papaya HOM05D004961 ORTHO05D006258 1.7e-25 120.9 157 45.2
unitig_22.g6801 Utricularia gibba HOM05D004961 ORTHO05D006258 3.8e-25 119.8 186 39.2
BcaNung07139 Brassica carinata HOM05D004961 ORTHO05D006258 1.8e-11 74.3 81 50.6
SGA_v2.0_scaffold43G16471 Striga asiatica HOM05D004961 ORTHO05D006258 1.5e-10 71.2 140 33.6
HanXRQChr12g0366651 Helianthus annuus HOM05D001845 ORTHO05D001878 5.5e-08 62.8 60 56.7


User provided reference genes

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