Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g07396 Brassica carinata HOM05D003683 ORTHO05D004143 6.2e-46 187.2 100 100.0
C06p26960 Brassica napus HOM05D003683 ORTHO05D004143 8.9e-37 156.8 99 83.8
A07p25250 Brassica napus HOM05D003683 ORTHO05D004143 1.5e-36 156.0 98 84.7
BraA07t30167Z Brassica rapa HOM05D003683 ORTHO05D004143 1.5e-36 156.0 98 83.7
Sp5g02360 Schrenkiella parvula HOM05D003683 ORTHO05D004143 7.6e-36 153.7 98 85.7
BolC6t37870H Brassica oleracea HOM05D003683 ORTHO05D004143 2.9e-35 151.8 101 82.2
Thhalv10006309m.g Eutrema salsugineum HOM05D003683 ORTHO05D004143 1.2e-33 146.4 98 82.7
AT3G60890 Arabidopsis thaliana HOM05D003683 ORTHO05D004143 7.8e-33 143.7 99 78.8
BcaC02g10196 Brassica carinata HOM05D003683 ORTHO05D004143 1.3e-32 142.9 93 86.0
BcaC08g45089 Brassica carinata HOM05D003683 ORTHO05D004143 3.0e-32 141.7 101 78.2
AL5G43210 Arabidopsis lyrata HOM05D003683 ORTHO05D004143 6.6e-32 140.6 99 76.8
A04p01350 Brassica napus HOM05D003683 ORTHO05D004143 1.1e-31 139.8 93 86.0
BcaC08g45090 Brassica carinata HOM05D003683 ORTHO05D004143 3.3e-31 138.3 99 78.8
Carub.0005s2764 Capsella rubella HOM05D003683 ORTHO05D004143 2.4e-29 132.1 100 77.0
C04p31700 Brassica napus HOM05D003683 ORTHO05D004143 3.1e-29 131.7 104 75.0
CARHR171270 Cardamine hirsuta HOM05D003683 ORTHO05D004143 8.1e-22 107.1 96 65.6
BraA04t15855Z Brassica rapa HOM05D003683 ORTHO05D004143 9.0e-21 103.6 93 66.7
Thhalv10001694m.g Eutrema salsugineum HOM05D003683 ORTHO05D004143 5.4e-18 94.4 101 59.4
Carub.0004s2806 Capsella rubella HOM05D003683 ORTHO05D004143 7.1e-18 94.0 102 58.8
AL4G44620 Arabidopsis lyrata HOM05D003683 ORTHO05D004143 1.6e-17 92.8 101 60.4
Sp4g27480 Schrenkiella parvula HOM05D003683 ORTHO05D004143 2.1e-17 92.4 101 59.4
BcaB02g08986 Brassica carinata HOM05D003683 ORTHO05D004143 6.0e-17 90.9 96 59.4
AT2G45450 Arabidopsis thaliana HOM05D003683 ORTHO05D004143 7.9e-17 90.5 94 59.6
A05p05480 Brassica napus HOM05D003683 ORTHO05D004143 1.3e-16 89.7 101 58.4
BraA05t19518Z Brassica rapa HOM05D003683 ORTHO05D004143 1.3e-16 89.7 101 58.4
BcaB01g03267 Brassica carinata HOM05D003683 ORTHO05D004143 1.8e-16 89.4 96 59.4
BcaC02g12206 Brassica carinata HOM05D003683 ORTHO05D004143 2.3e-16 89.0 101 58.4
C04p06420 Brassica napus HOM05D003683 ORTHO05D004143 2.3e-16 89.0 101 58.4
BolC4t22265H Brassica oleracea HOM05D003683 ORTHO05D004143 2.3e-16 89.0 101 58.4
BolC4t24719H Brassica oleracea HOM05D003683 ORTHO05D004143 2.3e-16 89.0 49 93.9
CARHR140640 Cardamine hirsuta HOM05D003683 ORTHO05D004143 2.3e-16 89.0 101 57.4
A03p25230 Brassica napus HOM05D003683 ORTHO05D004143 3.9e-16 88.2 96 59.4
C03p30100 Brassica napus HOM05D003683 ORTHO05D004143 3.9e-16 88.2 96 59.4
BcaB02g08997 Brassica carinata HOM05D003683 ORTHO05D004143 6.7e-16 87.4 101 57.4
BcaC01g05122 Brassica carinata HOM05D003683 ORTHO05D004143 1.1e-15 86.7 96 58.3
BcaC01g05135 Brassica carinata HOM05D003683 ORTHO05D004143 1.1e-15 86.7 96 58.3
A04p33850 Brassica napus HOM05D003683 ORTHO05D004143 4.8e-14 81.3 101 53.5
BraA04t18845Z Brassica rapa HOM05D003683 ORTHO05D004143 4.8e-14 81.3 101 53.5
BcaC02g07091 Brassica carinata HOM05D003683 ORTHO05D004143 3.1e-13 78.6 101 51.5
C04p71580 Brassica napus HOM05D003683 ORTHO05D004143 3.1e-13 78.6 101 51.5
BolC4t28663H Brassica oleracea HOM05D003683 ORTHO05D004143 3.1e-13 78.6 101 51.5
BcaB06g29422 Brassica carinata HOM05D003683 ORTHO05D004143 4.5e-12 74.7 101 53.5
Aa31LG1G26950 Aethionema arabicum HOM05D003683 ORTHO05D004143 4.9e-11 71.2 109 50.5
Cfa001703 Carpinus fangiana HOM05D003683 ORTHO05D004143 4.2e-10 68.2 106 49.1
CiPaw.01G260700 Carya illinoinensis HOM05D003683 ORTHO05D004143 1.2e-09 66.6 106 48.1
Gohir.D11G086200 Gossypium hirsutum HOM05D003683 ORTHO05D004143 2.1e-09 65.9 91 49.5
TAR375G1063 Trochodendron aralioides HOM05D003683 ORTHO05D004143 2.1e-09 65.9 102 47.1
FAN10G1839 Fragaria x ananassa HOM05D003683 ORTHO05D004143 4.6e-09 64.7 96 46.9
Glyma.03G022200 Glycine max HOM05D003683 ORTHO05D004143 6.0e-09 64.3 109 41.3
Dinv43725 Davidia involucrata HOM05D003683 ORTHO05D004143 7.9e-09 63.9 77 50.6
FvH4_7g12070 Fragaria vesca HOM05D003683 ORTHO05D004143 7.9e-09 63.9 96 46.9
FAN06G0493 Fragaria x ananassa HOM05D003683 ORTHO05D004143 7.9e-09 63.9 96 46.9
FAN06G2934 Fragaria x ananassa HOM05D003683 ORTHO05D004143 7.9e-09 63.9 96 46.9
Gohir.A11G081600 Gossypium hirsutum HOM05D003683 ORTHO05D004143 7.9e-09 63.9 87 50.6
RcHm_v2.0_Chr1g0350821 Rosa chinensis HOM05D003683 ORTHO05D004143 1.0e-08 63.5 98 48.0
ClCG05G002130 Citrullus lanatus HOM05D003683 ORTHO05D004143 1.8e-08 62.8 59 61.0
Ciclev10023705m.g Citrus clementina HOM05D003683 ORTHO05D004143 1.8e-08 62.8 73 50.7
Manes.02G031900 Manihot esculenta HOM05D003683 ORTHO05D004143 1.8e-08 62.8 94 45.7
Duzib138G1197 Durio zibethinus HOM05D003683 ORTHO05D004143 2.3e-08 62.4 108 40.7
Potri.002G149600 Populus trichocarpa HOM05D003683 ORTHO05D004143 3.0e-08 62.0 75 49.3
FAN10G4272 Fragaria x ananassa HOM05D003683 ORTHO05D004143 3.9e-08 61.6 96 45.8
Prupe.2G147300 Prunus persica HOM05D003683 ORTHO05D004143 3.9e-08 61.6 108 46.3
Thecc.01G374500 Theobroma cacao HOM05D003683 ORTHO05D004143 3.9e-08 61.6 106 43.4
Lalb_Chr03g0039121 Lupinus albus HOM05D003683 ORTHO05D004143 5.1e-08 61.2 103 41.7
Dinv32390 Davidia involucrata HOM05D003683 ORTHO05D004143 6.7e-08 60.8 107 43.0
Potri.003G117200 Populus trichocarpa HOM05D003683 ORTHO05D004143 6.7e-08 60.8 96 46.9
Sabra01G0087900 Salix brachista HOM05D003683 ORTHO05D004143 6.7e-08 60.8 96 46.9
GSVIVG01019925001 Vitis vinifera HOM05D003683 ORTHO05D004143 6.7e-08 60.8 95 45.3
CSS0019244 Camellia sinensis var. sinensis HOM05D003683 ORTHO05D004143 8.7e-08 60.5 96 44.8
CiPaw.12G102800 Carya illinoinensis HOM05D003683 ORTHO05D004143 8.7e-08 60.5 95 45.3
Hma1.2p1_3528F.1_g336600 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 8.7e-08 60.5 105 40.0
CAN.G630.45 Capsicum annuum HOM05D003683 ORTHO05D004143 1.1e-07 60.1 96 42.7
Dinv39058 Davidia involucrata HOM05D003683 ORTHO05D004143 1.1e-07 60.1 99 43.4
Manes.01G071300 Manihot esculenta HOM05D003683 ORTHO05D004143 1.1e-07 60.1 94 45.7
Potri.014G071200 Populus trichocarpa HOM05D003683 ORTHO05D004143 1.1e-07 60.1 74 51.4
CiPaw.02G166400 Carya illinoinensis HOM05D003683 ORTHO05D004143 1.5e-07 59.7 87 48.3
CsaV3_3G009560 Cucumis sativus L. HOM05D003683 ORTHO05D004143 1.9e-07 59.3 78 48.7
Medtr7g075120 Medicago truncatula HOM05D003683 ORTHO05D004143 1.9e-07 59.3 96 38.5
Duzib133G0707 Durio zibethinus HOM05D003683 ORTHO05D004143 2.5e-07 58.9 98 42.9
COL.COLO4_23839 Corchorus olitorius HOM05D003683 ORTHO05D004143 3.3e-07 58.5 82 46.3
Gorai.008G114600 Gossypium raimondii HOM05D003683 ORTHO05D004143 3.3e-07 58.5 100 41.0
MELO3C005596.2 Cucumis melo HOM05D003683 ORTHO05D004143 4.3e-07 58.2 74 51.4
MELO3C006178.2 Cucumis melo HOM05D003683 ORTHO05D004143 5.7e-07 57.8 85 47.1
Glyma.01G144700 Glycine max HOM05D003683 ORTHO05D004143 5.7e-07 57.8 56 53.6
Hma1.2p1_0138F.1_g062970 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 5.7e-07 57.8 97 44.3
Nn4g26435 Nelumbo nucifera HOM05D003683 ORTHO05D004143 5.7e-07 57.8 96 42.7
Sed0003331 Sechium edule HOM05D003683 ORTHO05D004143 5.7e-07 57.8 65 53.8
Sopen08g003530 Solanum pennellii HOM05D003683 ORTHO05D004143 5.7e-07 57.8 81 48.1
THA.LOC104801993 Tarenaya hassleriana HOM05D003683 ORTHO05D004143 5.7e-07 57.8 102 42.2
Thecc.03G264300 Theobroma cacao HOM05D003683 ORTHO05D004143 5.7e-07 57.8 76 50.0
TAR629G0669 Trochodendron aralioides HOM05D003683 ORTHO05D004143 5.7e-07 57.8 96 46.9
TAR629G3017 Trochodendron aralioides HOM05D003683 ORTHO05D004143 5.7e-07 57.8 96 46.9
Cfa012041 Carpinus fangiana HOM05D003683 ORTHO05D004143 7.4e-07 57.4 69 53.6
COL.COLO4_12571 Corchorus olitorius HOM05D003683 ORTHO05D004143 7.4e-07 57.4 110 41.8
FAN01G1734 Fragaria x ananassa HOM05D003683 ORTHO05D004143 7.4e-07 57.4 96 45.8
Lj2A204T52 Lonicera japonica HOM05D003683 ORTHO05D004143 7.4e-07 57.4 101 42.6
Lj3g0025203 Lotus japonicus HOM05D003683 ORTHO05D004143 7.4e-07 57.4 104 43.3
MD02G1201500 Malus domestica HOM05D003683 ORTHO05D004143 7.4e-07 57.4 44 68.2
Aqoxy7G00590 Aquilegia oxysepala HOM05D003683 ORTHO05D004143 9.6e-07 57.0 95 48.4
Migut.E01009 Erythranthe guttata HOM05D003683 ORTHO05D004143 9.6e-07 57.0 96 42.7
Hma1.2p1_1793F.1_g302590 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 9.6e-07 57.0 79 46.8
MSTRG.13795 Avicennia marina HOM05D003683 ORTHO05D004143 1.3e-06 56.6 62 53.2
CSS0021060 Camellia sinensis var. sinensis HOM05D003683 ORTHO05D004143 1.3e-06 56.6 77 42.9
Glyma.18G221800 Glycine max HOM05D003683 ORTHO05D004143 1.3e-06 56.6 101 39.6
Manes.01G264900 Manihot esculenta HOM05D003683 ORTHO05D004143 1.3e-06 56.6 76 47.4
Sabra03G0081600 Salix brachista HOM05D003683 ORTHO05D004143 1.3e-06 56.6 89 47.2
Atru.chr9.1472 Acer truncatum HOM05D003683 ORTHO05D004143 1.6e-06 56.2 99 43.4
ECA233G3941 Erigeron canadensis HOM05D003683 ORTHO05D004143 1.6e-06 56.2 73 45.2
CsaV3_5G003580 Cucumis sativus L. HOM05D003683 ORTHO05D004143 2.1e-06 55.8 75 49.3
Gohir.A12G222400 Gossypium hirsutum HOM05D003683 ORTHO05D004143 2.1e-06 55.8 76 51.3
PGR042G1830 Punica granatum HOM05D003683 ORTHO05D004143 2.1e-06 55.8 98 41.8
CiPaw.11G145300 Carya illinoinensis HOM05D003683 ORTHO05D004143 2.8e-06 55.5 94 40.4
Haze_09035 Corylus avellana HOM05D003683 ORTHO05D004143 2.8e-06 55.5 70 52.9
Dinv37740 Davidia involucrata HOM05D003683 ORTHO05D004143 2.8e-06 55.5 97 39.2
Phvul.010G085600 Phaseolus vulgaris HOM05D003683 ORTHO05D004143 3.7e-06 55.1 105 41.0
PGSC0003DMG400012487 Solanum tuberosum HOM05D003683 ORTHO05D004143 3.7e-06 55.1 81 46.9
ATR0820G297 Amborella trichopoda HOM05D003360 ORTHO05D003759 4.8e-06 54.7 45 64.4
ClCG01G003480 Citrullus lanatus HOM05D003683 ORTHO05D004143 4.8e-06 54.7 69 47.8
Cc08_g13490 Coffea canephora HOM05D003683 ORTHO05D004143 4.8e-06 54.7 79 49.4
Peaxi162Scf00021g00139 Petunia axillaris HOM05D003683 ORTHO05D004143 4.8e-06 54.7 83 45.8
Oeu064712.1 Olea europaea HOM05D003683 ORTHO05D004143 6.2e-06 54.3 63 54.0
TWI23G1078 Tripterygium wilfordii HOM05D003683 ORTHO05D004143 6.2e-06 54.3 63 49.2
EL10Ac5g12652 Beta vulgaris HOM05D003683 ORTHO05D004143 8.2e-06 53.9 82 37.8
Gohir.A12G102100 Gossypium hirsutum HOM05D003683 ORTHO05D004143 8.2e-06 53.9 100 39.0
Gohir.D12G105300 Gossypium hirsutum HOM05D003683 ORTHO05D004143 8.2e-06 53.9 91 41.8
Lsat_1_v5_gn_6_10220 Lactuca sativa HOM05D003683 ORTHO05D004143 8.2e-06 53.9 81 43.2
PGSC0003DMG400003921 Solanum tuberosum HOM05D003683 ORTHO05D004143 8.2e-06 53.9 99 42.4


User provided reference genes

Program Settings